Wall clock time and date at job start Mon Mar 30 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99794 * 2 1 4 4 C 1.53000 * 109.46913 * 269.99748 * 3 2 1 5 5 C 1.54995 * 113.19951 * 64.16812 * 4 3 2 6 6 C 1.54061 * 104.76180 * 146.46849 * 5 4 3 7 7 N 1.48238 * 106.69882 * 1.01716 * 6 5 4 8 8 C 1.48808 * 105.17895 * 332.51657 * 7 6 5 9 9 C 1.47676 * 108.90774 * 88.16313 * 7 6 5 10 10 C 1.52987 * 109.29216 * 312.91398 * 9 7 6 11 11 C 1.54017 * 113.03128 * 301.17511 * 4 3 2 12 12 C 1.34774 * 119.99966 * 179.97438 * 2 1 3 13 13 O 1.21691 * 119.99707 * 180.02562 * 12 2 1 14 14 C 1.46374 * 119.99951 * 359.97438 * 12 2 1 15 15 H 1.07991 * 120.00335 * 0.02562 * 14 12 2 16 16 C 1.40055 * 119.99881 * 180.02562 * 14 12 2 17 17 N 1.30678 * 119.99845 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00205 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47341 * 180.02562 * 18 16 14 20 20 H 1.48510 * 109.46748 * 300.00101 * 18 16 14 21 21 H 1.48498 * 109.47206 * 59.99778 * 18 16 14 22 22 H 1.09004 * 109.47522 * 270.00279 * 1 2 3 23 23 H 1.09003 * 109.47296 * 30.00377 * 1 2 3 24 24 H 1.09000 * 109.47462 * 150.00553 * 1 2 3 25 25 H 1.08996 * 109.47264 * 29.99932 * 3 2 1 26 26 H 1.08994 * 109.46914 * 150.00067 * 3 2 1 27 27 H 1.08997 * 110.38553 * 265.29000 * 5 4 3 28 28 H 1.09004 * 110.37574 * 27.65480 * 5 4 3 29 29 H 1.09007 * 110.01803 * 241.71166 * 6 5 4 30 30 H 1.09001 * 110.05156 * 120.35166 * 6 5 4 31 31 H 1.09001 * 110.92677 * 284.56127 * 8 7 6 32 32 H 1.08996 * 110.96350 * 160.90630 * 8 7 6 33 33 H 1.09006 * 109.50298 * 72.85939 * 9 7 6 34 34 H 1.09005 * 109.50302 * 192.92997 * 9 7 6 35 35 H 1.08996 * 109.36636 * 64.97844 * 10 9 7 36 36 H 1.09001 * 109.37328 * 184.59855 * 10 9 7 37 37 H 1.08994 * 109.63185 * 291.83332 * 11 4 3 38 38 H 1.09007 * 109.62826 * 52.42978 * 11 4 3 39 39 H 0.97001 * 119.99601 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1511 2.0209 -2.2251 6 6 1.5322 3.1669 -3.1816 7 7 2.9693 3.4512 -2.9545 8 6 3.2273 3.0523 -1.5443 9 6 3.7743 2.5781 -3.8323 10 6 3.2521 1.1434 -3.7346 11 6 3.2573 0.6789 -2.2551 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1671 0.0010 14 6 1.4070 -2.4348 0.0017 15 1 0.3271 -2.4349 0.0017 16 6 2.1072 -3.6477 0.0027 17 7 3.4140 -3.6477 0.0022 18 14 1.1733 -5.2654 0.0035 19 1 2.1383 -6.3941 0.0052 20 1 0.3191 -5.3432 1.2158 21 1 0.3200 -5.3449 -1.2093 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6084 2.0284 0.5138 26 1 3.1498 1.1385 0.5138 27 1 0.8300 1.1459 -2.7902 28 1 0.3649 2.3422 -1.5419 29 1 0.9371 4.0525 -2.9585 30 1 1.3713 2.8603 -4.2151 31 1 2.8223 3.7894 -0.8509 32 1 4.2926 2.9010 -1.3705 33 1 3.6946 2.9250 -4.8626 34 1 4.8176 2.6084 -3.5179 35 1 2.2380 1.1001 -4.1318 36 1 3.8951 0.4841 -4.3177 37 1 4.2759 0.6243 -1.8711 38 1 2.7813 -0.2989 -2.1795 39 1 3.8990 -4.4877 0.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691477525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:09 Heat of formation + Delta-G solvation = -24.346766 kcal Electronic energy + Delta-G solvation = -20127.976256 eV Core-core repulsion = 17263.473103 eV Total energy + Delta-G solvation = -2864.503154 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62360 -37.52889 -34.13168 -32.44411 -31.69105 -31.61576 -29.27904 -27.04800 -25.83634 -24.70236 -23.31258 -22.18761 -20.27089 -19.28735 -18.26301 -16.39814 -16.01203 -15.52889 -15.50321 -14.46967 -14.16636 -14.13172 -13.47771 -13.22884 -12.87386 -12.46388 -12.40944 -12.18885 -11.84333 -11.56993 -11.44599 -11.42377 -11.20566 -11.10705 -10.81306 -10.58688 -10.53248 -10.29947 -10.29204 -10.09362 -10.02030 -9.75884 -8.84742 -8.27638 -7.55519 -7.14292 -6.19421 -4.64547 3.13543 3.19100 3.20322 4.07915 4.25414 4.53631 4.60548 4.86958 4.99268 5.31338 5.34660 5.39078 5.44510 5.59172 5.72993 5.74676 5.79706 5.82622 6.00623 6.02576 6.06522 6.09905 6.16858 6.22050 6.25387 6.35248 6.49644 6.55522 6.58560 6.65336 6.86854 6.98856 7.06984 7.17755 7.43782 7.65234 8.14989 8.36787 9.02181 9.44730 10.58128 10.77606 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.006616 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.574010 B = 4231.208948 C = 4458.347832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.644 5.644 3 C 0.150 3.850 4 C -0.101 4.101 5 C -0.133 4.133 6 C 0.029 3.971 7 N -0.500 5.500 8 C 0.037 3.963 9 C 0.036 3.964 10 C -0.157 4.157 11 C -0.094 4.094 12 C 0.559 3.441 13 O -0.573 6.573 14 C -0.546 4.546 15 H 0.069 0.931 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.268 1.268 21 H -0.269 1.269 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 9.897 -4.981 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.382 5.382 3 C 0.025 3.975 4 C -0.104 4.104 5 C -0.172 4.172 6 C -0.100 4.100 7 N -0.220 5.220 8 C -0.092 4.092 9 C -0.093 4.093 10 C -0.196 4.196 11 C -0.132 4.132 12 C 0.365 3.635 13 O -0.455 6.455 14 C -0.583 4.583 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.193 1.193 21 H -0.194 1.194 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.162 10.400 -5.119 12.015 hybrid contribution -0.857 -1.783 0.084 1.980 sum -4.020 8.617 -5.035 10.759 Atomic orbital electron populations 1.21440 0.82547 1.01023 0.99401 1.47906 1.04896 1.05310 1.80108 1.20694 0.97606 0.86500 0.92698 1.22890 0.94530 0.95784 0.97225 1.22912 0.97865 0.98314 0.98122 1.23070 0.90009 0.97576 0.99297 1.66438 1.04300 1.47299 1.04007 1.23531 1.00334 0.95053 0.90300 1.22538 0.98005 0.91353 0.97386 1.22626 1.01325 0.96920 0.98712 1.22046 1.00366 0.99163 0.91579 1.18143 0.86995 0.82159 0.76235 1.90601 1.13842 1.86251 1.54808 1.20988 0.93623 0.89447 1.54218 0.91244 1.25706 0.94581 1.00169 0.92652 1.70008 1.06965 1.27264 1.35330 0.86504 0.79910 0.81348 0.79420 1.20581 1.19302 1.19359 0.95324 0.93921 0.91272 0.92909 0.90818 0.91329 0.91829 0.90902 0.91600 0.90509 0.90498 0.91296 0.91027 0.91865 0.92185 0.91746 0.90164 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 9.85 59.85 0.59 2.42 16 2 N -0.64 -14.10 2.63 -183.25 -0.48 -14.58 16 3 C 0.15 2.85 4.91 -4.04 -0.02 2.83 16 4 C -0.10 -1.70 0.87 -151.71 -0.13 -1.83 16 5 C -0.13 -1.98 4.45 -25.12 -0.11 -2.09 16 6 C 0.03 0.38 6.20 -2.53 -0.02 0.37 16 7 N -0.50 -7.10 6.07 -228.98 -1.39 -8.49 16 8 C 0.04 0.54 5.93 -1.55 -0.01 0.54 16 9 C 0.04 0.50 5.84 -3.40 -0.02 0.48 16 10 C -0.16 -2.47 5.56 -25.64 -0.14 -2.61 16 11 C -0.09 -1.82 4.06 -25.10 -0.10 -1.92 16 12 C 0.56 15.26 6.08 -12.99 -0.08 15.18 16 13 O -0.57 -17.53 13.26 5.20 0.07 -17.46 16 14 C -0.55 -15.04 8.74 -35.63 -0.31 -15.35 16 15 H 0.07 1.76 6.00 -52.49 -0.31 1.45 16 16 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 17 N -0.77 -22.57 11.83 55.55 0.66 -21.91 16 18 Si 0.90 19.96 29.56 -169.99 -5.02 14.94 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.65 5.91 -51.93 -0.31 0.34 16 24 H 0.07 1.32 6.09 -51.93 -0.32 1.00 16 25 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.07 1.57 7.42 -51.93 -0.39 1.19 16 27 H 0.07 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.83 6.94 -51.93 -0.36 0.47 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 35 H 0.06 0.97 5.37 -51.93 -0.28 0.69 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.37 8.06 -51.93 -0.42 0.95 16 38 H 0.08 1.91 6.05 -51.93 -0.31 1.59 16 39 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -31.41 290.69 -8.11 -39.52 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.87 Total: 3.27 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.45 Total: 0.33 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -1.21 Total: -44.99 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.07 Total: -17.46 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.41 -8.11 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691477525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.177 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds