Wall clock time and date at job start Mon Mar 30 2020 03:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99794 * 2 1 4 4 C 1.53000 * 109.46913 * 269.99748 * 3 2 1 5 5 C 1.54995 * 113.19951 * 64.16812 * 4 3 2 6 6 C 1.54061 * 104.76180 * 146.46849 * 5 4 3 7 7 N 1.48238 * 106.69882 * 1.01716 * 6 5 4 8 8 C 1.48808 * 105.17895 * 332.51657 * 7 6 5 9 9 C 1.47676 * 108.90774 * 88.16313 * 7 6 5 10 10 C 1.52987 * 109.29216 * 312.91398 * 9 7 6 11 11 C 1.54017 * 113.03128 * 301.17511 * 4 3 2 12 12 C 1.34774 * 119.99966 * 179.97438 * 2 1 3 13 13 O 1.21691 * 119.99707 * 180.02562 * 12 2 1 14 14 C 1.46374 * 119.99951 * 359.97438 * 12 2 1 15 15 H 1.07991 * 120.00335 * 0.02562 * 14 12 2 16 16 C 1.40055 * 119.99881 * 180.02562 * 14 12 2 17 17 N 1.30678 * 119.99845 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00205 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47341 * 180.02562 * 18 16 14 20 20 H 1.48510 * 109.46748 * 300.00101 * 18 16 14 21 21 H 1.48498 * 109.47206 * 59.99778 * 18 16 14 22 22 H 1.09004 * 109.47522 * 270.00279 * 1 2 3 23 23 H 1.09003 * 109.47296 * 30.00377 * 1 2 3 24 24 H 1.09000 * 109.47462 * 150.00553 * 1 2 3 25 25 H 1.08996 * 109.47264 * 29.99932 * 3 2 1 26 26 H 1.08994 * 109.46914 * 150.00067 * 3 2 1 27 27 H 1.08997 * 110.38553 * 265.29000 * 5 4 3 28 28 H 1.09004 * 110.37574 * 27.65480 * 5 4 3 29 29 H 1.09007 * 110.01803 * 241.71166 * 6 5 4 30 30 H 1.09001 * 110.05156 * 120.35166 * 6 5 4 31 31 H 1.09001 * 110.92677 * 284.56127 * 8 7 6 32 32 H 1.08996 * 110.96350 * 160.90630 * 8 7 6 33 33 H 1.09006 * 109.50298 * 72.85939 * 9 7 6 34 34 H 1.09005 * 109.50302 * 192.92997 * 9 7 6 35 35 H 1.08996 * 109.36636 * 64.97844 * 10 9 7 36 36 H 1.09001 * 109.37328 * 184.59855 * 10 9 7 37 37 H 1.08994 * 109.63185 * 291.83332 * 11 4 3 38 38 H 1.09007 * 109.62826 * 52.42978 * 11 4 3 39 39 H 0.97001 * 119.99601 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1511 2.0209 -2.2251 6 6 1.5322 3.1669 -3.1816 7 7 2.9693 3.4512 -2.9545 8 6 3.2273 3.0523 -1.5443 9 6 3.7743 2.5781 -3.8323 10 6 3.2521 1.1434 -3.7346 11 6 3.2573 0.6789 -2.2551 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1671 0.0010 14 6 1.4070 -2.4348 0.0017 15 1 0.3271 -2.4349 0.0017 16 6 2.1072 -3.6477 0.0027 17 7 3.4140 -3.6477 0.0022 18 14 1.1733 -5.2654 0.0035 19 1 2.1383 -6.3941 0.0052 20 1 0.3191 -5.3432 1.2158 21 1 0.3200 -5.3449 -1.2093 22 1 -0.3634 0.0001 1.0277 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6084 2.0284 0.5138 26 1 3.1498 1.1385 0.5138 27 1 0.8300 1.1459 -2.7902 28 1 0.3649 2.3422 -1.5419 29 1 0.9371 4.0525 -2.9585 30 1 1.3713 2.8603 -4.2151 31 1 2.8223 3.7894 -0.8509 32 1 4.2926 2.9010 -1.3705 33 1 3.6946 2.9250 -4.8626 34 1 4.8176 2.6084 -3.5179 35 1 2.2380 1.1001 -4.1318 36 1 3.8951 0.4841 -4.3177 37 1 4.2759 0.6243 -1.8711 38 1 2.7813 -0.2989 -2.1795 39 1 3.8990 -4.4877 0.0034 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691477525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:09 Heat of formation + Delta-G solvation = -47.135819 kcal Electronic energy + Delta-G solvation = -20128.964464 eV Core-core repulsion = 17263.473103 eV Total energy + Delta-G solvation = -2865.491361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91775 -39.40749 -35.96794 -34.55710 -33.13236 -32.92507 -30.49279 -28.84289 -27.54975 -26.28533 -24.76407 -23.46007 -21.70578 -20.87163 -19.72902 -18.34074 -17.57618 -17.21654 -16.85918 -16.20299 -15.93936 -15.45703 -14.85155 -14.74185 -14.42290 -13.96016 -13.77234 -13.61517 -13.30074 -13.16172 -13.04016 -13.03634 -12.79847 -12.70006 -12.45839 -12.18023 -12.08263 -11.93353 -11.73740 -11.50805 -11.39900 -11.13793 -10.90067 -9.72129 -9.48066 -8.93291 -8.25968 -6.80592 1.37135 1.40142 1.51002 2.22993 2.50525 2.91281 3.10974 3.56154 3.64804 3.80193 3.96434 4.09121 4.17269 4.23851 4.34906 4.42690 4.53346 4.55532 4.62462 4.65997 4.78530 4.85535 4.89494 4.91507 5.01012 5.02654 5.07366 5.09205 5.15076 5.30711 5.37776 5.42797 5.45508 5.81273 5.84250 5.99265 6.17289 6.48973 6.90734 7.49182 8.53508 8.72713 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.006616 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.574010 B = 4231.208948 C = 4458.347832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.645 5.645 3 C 0.148 3.852 4 C -0.101 4.101 5 C -0.126 4.126 6 C 0.033 3.967 7 N -0.496 5.496 8 C 0.044 3.956 9 C 0.040 3.960 10 C -0.148 4.148 11 C -0.088 4.088 12 C 0.547 3.453 13 O -0.620 6.620 14 C -0.574 4.574 15 H 0.087 0.913 16 C 0.031 3.969 17 N -0.821 5.821 18 Si 0.988 3.012 19 H -0.276 1.276 20 H -0.255 1.255 21 H -0.256 1.256 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 11.390 -5.798 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.381 5.381 3 C 0.024 3.976 4 C -0.104 4.104 5 C -0.164 4.164 6 C -0.095 4.095 7 N -0.216 5.216 8 C -0.085 4.085 9 C -0.088 4.088 10 C -0.187 4.187 11 C -0.126 4.126 12 C 0.352 3.648 13 O -0.507 6.507 14 C -0.611 4.611 15 H 0.105 0.895 16 C -0.184 4.184 17 N -0.451 5.451 18 Si 0.808 3.192 19 H -0.201 1.201 20 H -0.179 1.179 21 H -0.180 1.180 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.722 11.944 -5.938 14.514 hybrid contribution -0.069 -2.187 0.359 2.218 sum -5.791 9.756 -5.579 12.643 Atomic orbital electron populations 1.21596 0.79968 1.02306 1.00544 1.47745 1.06589 1.04953 1.78808 1.20843 0.96326 0.86010 0.94419 1.22799 0.96068 0.95987 0.95588 1.22845 0.96749 0.98507 0.98345 1.23131 0.89284 0.97661 0.99405 1.66489 1.05105 1.46786 1.03254 1.23494 0.99576 0.93981 0.91481 1.22562 0.97796 0.89659 0.98831 1.22562 1.01979 0.98425 0.95706 1.21852 0.98110 0.97718 0.94884 1.18411 0.86633 0.83941 0.75811 1.90556 1.15910 1.87436 1.56750 1.21516 0.94692 0.90294 1.54552 0.89496 1.26893 0.95425 1.04659 0.91402 1.70192 1.09339 1.28594 1.36979 0.85213 0.78356 0.75430 0.80206 1.20122 1.17875 1.17999 0.94101 0.90249 0.92385 0.89248 0.94367 0.92940 0.90053 0.88541 0.90532 0.88318 0.91559 0.88736 0.91330 0.90974 0.92595 0.95338 0.95410 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.44 9.85 127.77 1.26 4.70 16 2 N -0.65 -28.56 2.63 -851.89 -2.24 -30.80 16 3 C 0.15 5.63 4.91 86.38 0.42 6.06 16 4 C -0.10 -3.37 0.87 -50.37 -0.04 -3.41 16 5 C -0.13 -3.39 4.45 31.64 0.14 -3.25 16 6 C 0.03 0.75 6.20 86.40 0.54 1.28 16 7 N -0.50 -12.60 6.07 -878.37 -5.33 -17.93 16 8 C 0.04 1.22 5.93 86.72 0.51 1.74 16 9 C 0.04 1.04 5.84 86.15 0.50 1.54 16 10 C -0.15 -4.64 5.56 31.30 0.17 -4.46 16 11 C -0.09 -3.57 4.06 31.65 0.13 -3.44 16 12 C 0.55 31.19 6.08 86.36 0.52 31.72 16 13 O -0.62 -40.59 13.26 -4.32 -0.06 -40.65 16 14 C -0.57 -32.43 8.74 24.83 0.22 -32.21 16 15 H 0.09 4.43 6.00 -2.92 -0.02 4.41 16 16 C 0.03 1.74 5.50 85.31 0.47 2.21 16 17 N -0.82 -50.62 11.83 21.84 0.26 -50.36 16 18 Si 0.99 41.40 29.56 68.60 2.03 43.42 16 19 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.08 2.16 5.91 -2.39 -0.01 2.15 16 24 H 0.06 2.15 6.09 -2.39 -0.01 2.13 16 25 H 0.09 2.71 8.07 -2.39 -0.02 2.69 16 26 H 0.04 1.71 7.42 -2.39 -0.02 1.69 16 27 H 0.05 1.60 6.95 -2.39 -0.02 1.58 16 28 H 0.08 1.92 6.63 -2.38 -0.02 1.90 16 29 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.08 1.60 6.94 -2.39 -0.02 1.59 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 1.99 7.68 -2.39 -0.02 1.97 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.07 1.83 7.87 -2.38 -0.02 1.81 16 35 H 0.07 2.13 5.37 -2.39 -0.01 2.12 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 38 H 0.03 1.40 6.05 -2.38 -0.01 1.38 16 39 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 Total: -1.00 -73.25 290.69 0.55 -72.70 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.04 Total: 21.13 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.85 Total: 2.48 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -7.31 Total: -99.09 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.06 Total: -40.65 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -73.25 0.55 -72.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691477525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.564 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds