Wall clock time and date at job start Mon Mar 30 2020 04:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46846 * 110.99738 * 66.04780 * 10 9 7 12 12 C 1.53041 * 109.52003 * 174.15981 * 11 10 9 13 13 C 1.53120 * 109.28215 * 59.17728 * 12 11 10 14 14 C 1.53120 * 109.15835 * 302.34563 * 13 12 11 15 15 H 1.08998 * 109.50010 * 297.67235 * 14 13 12 16 16 C 1.52999 * 109.49986 * 177.59109 * 14 13 12 17 17 H 1.08998 * 109.45911 * 185.01941 * 16 14 13 18 18 C 1.53044 * 109.45914 * 65.05739 * 16 14 13 19 19 C 1.53122 * 109.27622 * 180.80157 * 18 16 14 20 20 C 1.53122 * 109.16166 * 57.64830 * 19 18 16 21 21 C 1.53032 * 109.27911 * 302.35008 * 20 19 18 22 22 N 1.46841 * 109.46669 * 304.99902 * 16 14 13 23 23 C 1.46839 * 111.00234 * 301.83416 * 10 9 7 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.46476 * 294.17097 * 11 10 9 28 28 H 1.09003 * 109.46821 * 54.15380 * 11 10 9 29 29 H 1.09001 * 109.50321 * 179.12207 * 12 11 10 30 30 H 1.08999 * 109.50410 * 299.19360 * 12 11 10 31 31 H 1.08994 * 109.51809 * 62.24931 * 13 12 11 32 32 H 1.08995 * 109.52117 * 182.44169 * 13 12 11 33 33 H 1.08996 * 109.50271 * 300.74012 * 18 16 14 34 34 H 1.08997 * 109.50763 * 60.86133 * 18 16 14 35 35 H 1.08997 * 109.52234 * 297.75044 * 19 18 16 36 36 H 1.09000 * 109.57721 * 177.58750 * 19 18 16 37 37 H 1.09000 * 109.50322 * 182.40195 * 20 19 18 38 38 H 1.09008 * 109.53310 * 62.30824 * 20 19 18 39 39 H 1.08995 * 109.46482 * 299.15369 * 21 20 19 40 40 H 1.09007 * 109.46178 * 179.19573 * 21 20 19 41 41 H 1.00898 * 111.00186 * 305.85763 * 22 16 14 42 42 H 1.08998 * 109.46586 * 305.85726 * 23 10 9 43 43 H 1.09001 * 109.46136 * 65.82255 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.6521 -3.2605 -1.2532 12 6 4.3002 -4.6467 -1.2793 13 6 3.8047 -5.4591 -0.0797 14 6 4.1376 -4.7045 1.2103 15 1 5.2187 -4.6021 1.3033 16 6 3.5927 -5.4805 2.4111 17 1 3.7509 -4.9006 3.3203 18 6 4.3240 -6.8199 2.5270 19 6 3.7617 -7.6014 3.7177 20 6 2.2551 -7.7955 3.5252 21 6 1.5839 -6.4279 3.3803 22 7 2.1556 -5.7202 2.2276 23 6 3.4942 -3.3167 1.1642 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 2.5692 -3.3647 -1.3207 28 1 4.0140 -2.6747 -2.0982 29 1 4.0283 -5.1583 -2.2026 30 1 5.3839 -4.5428 -1.2265 31 1 2.7259 -5.5964 -0.1534 32 1 4.2968 -6.4316 -0.0702 33 1 4.1776 -7.3947 1.6126 34 1 5.3885 -6.6414 2.6789 35 1 3.9426 -7.0445 4.6370 36 1 4.2494 -8.5743 3.7791 37 1 1.8415 -8.3141 4.3901 38 1 2.0755 -8.3860 2.6267 39 1 1.7514 -5.8434 4.2849 40 1 0.5129 -6.5631 3.2287 41 1 1.6642 -4.8563 2.0535 42 1 3.7412 -2.7715 2.0751 43 1 2.4120 -3.4204 1.0854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692906604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:47 Heat of formation + Delta-G solvation = -17.326683 kcal Electronic energy + Delta-G solvation = -19888.281957 eV Core-core repulsion = 17159.916312 eV Total energy + Delta-G solvation = -2728.365645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.46982 -37.43347 -33.87390 -32.33686 -31.88446 -31.21124 -28.59273 -27.21135 -24.02749 -23.86565 -22.82070 -21.45774 -20.54358 -19.43546 -18.66866 -16.75359 -16.31500 -15.05133 -14.84432 -14.33679 -14.27450 -14.12124 -13.78090 -13.48112 -13.11079 -13.03496 -12.82447 -12.50811 -12.24149 -11.92033 -11.75998 -11.25775 -11.13790 -10.92986 -10.83480 -10.66172 -10.52218 -10.29507 -10.27166 -10.12200 -9.93585 -9.63227 -9.57413 -9.32282 -8.59125 -8.18207 -7.12928 -6.10258 -4.09661 3.27631 3.35284 3.39461 4.36483 4.39992 4.76921 4.86679 4.95154 5.09065 5.16424 5.23781 5.37760 5.46648 5.50887 5.59100 5.66366 5.73857 5.79488 5.90958 5.92457 5.98913 6.03442 6.11698 6.12861 6.21398 6.26031 6.40735 6.44783 6.50923 6.55277 6.67664 6.78446 6.83372 6.99796 7.03067 7.10871 7.29938 7.58647 7.62230 8.11364 8.18981 8.46102 8.92715 9.53201 11.02569 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.005861 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.964593 B = 4776.073351 C = 5309.618172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.153 3.847 10 N -0.534 5.534 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.102 4.102 14 C -0.080 4.080 15 H 0.072 0.928 16 C 0.096 3.904 17 H 0.034 0.966 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.116 4.116 21 C 0.058 3.942 22 N -0.683 5.683 23 C 0.069 3.931 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.351 0.649 42 H 0.057 0.943 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -13.518 5.037 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.026 3.974 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.156 4.156 13 C -0.139 4.139 14 C -0.099 4.099 15 H 0.090 0.910 16 C -0.015 4.015 17 H 0.052 0.948 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.072 4.072 22 N -0.318 5.318 23 C -0.060 4.060 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.171 0.829 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.840 -13.936 4.705 16.668 hybrid contribution -0.677 1.763 0.632 1.991 sum 7.163 -12.173 5.338 15.099 Atomic orbital electron populations 1.69930 1.06335 1.26924 1.50593 1.24969 0.94679 0.99176 0.94245 0.86813 0.80426 0.83647 0.78626 1.20214 1.21368 1.18866 1.21714 0.90713 0.94655 1.51695 0.90640 1.20180 0.94599 0.85889 0.96738 1.62328 1.58539 1.03443 1.01392 1.21880 0.98665 0.93375 0.92745 1.21650 1.00350 0.96048 0.97591 1.21477 1.01897 0.97029 0.93509 1.21290 0.99880 0.94728 0.93971 0.90997 1.21444 0.88238 0.95014 0.96766 0.94810 1.21648 0.98551 0.96017 0.98692 1.21579 0.95983 0.99895 0.98396 1.21573 0.95270 0.97026 1.01501 1.21873 0.98708 0.94715 0.91893 1.60340 1.03111 1.28643 1.39656 1.21901 0.97933 0.92097 0.94069 0.92747 0.95869 0.95481 0.94013 0.92173 0.92668 0.92326 0.91005 0.93005 0.90929 0.92012 0.92608 0.92275 0.92226 0.91311 0.95645 0.91076 0.82876 0.92438 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.55 -15.18 8.29 -34.44 -0.29 -15.47 16 8 H 0.08 2.26 6.08 -52.49 -0.32 1.94 16 9 C 0.15 3.70 4.20 -4.97 -0.02 3.68 16 10 N -0.53 -11.18 4.86 -236.11 -1.15 -12.33 16 11 C 0.06 1.21 5.14 -3.83 -0.02 1.19 16 12 C -0.12 -1.86 6.09 -26.65 -0.16 -2.03 16 13 C -0.10 -1.53 4.80 -26.61 -0.13 -1.65 16 14 C -0.08 -1.22 2.18 -90.54 -0.20 -1.42 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 16 C 0.10 1.31 2.19 -67.72 -0.15 1.16 16 17 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.11 -1.30 5.15 -26.65 -0.14 -1.43 16 19 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 20 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 21 C 0.06 0.70 6.55 -3.84 -0.03 0.68 16 22 N -0.68 -9.64 5.49 -106.77 -0.59 -10.23 16 23 C 0.07 1.31 4.08 -3.84 -0.02 1.30 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.57 7.49 -51.93 -0.39 0.18 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.04 0.92 7.03 -51.93 -0.37 0.55 16 28 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.19 7.40 -51.93 -0.38 0.80 16 32 H 0.05 0.70 6.68 -51.93 -0.35 0.35 16 33 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.35 5.55 6.98 -39.29 -0.27 5.28 16 42 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 43 H 0.05 0.99 5.02 -51.93 -0.26 0.73 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -28.81 313.30 -10.18 -38.99 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.71 Total: 3.39 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.56 Total: -14.85 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.96 Total: -49.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.81 -10.18 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.659 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds