Wall clock time and date at job start Mon Mar 30 2020 04:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46846 * 110.99738 * 66.04780 * 10 9 7 12 12 C 1.53041 * 109.52003 * 174.15981 * 11 10 9 13 13 C 1.53120 * 109.28215 * 59.17728 * 12 11 10 14 14 C 1.53120 * 109.15835 * 302.34563 * 13 12 11 15 15 H 1.08998 * 109.50010 * 297.67235 * 14 13 12 16 16 C 1.52999 * 109.49986 * 177.59109 * 14 13 12 17 17 H 1.08998 * 109.45911 * 185.01941 * 16 14 13 18 18 C 1.53044 * 109.45914 * 65.05739 * 16 14 13 19 19 C 1.53122 * 109.27622 * 180.80157 * 18 16 14 20 20 C 1.53122 * 109.16166 * 57.64830 * 19 18 16 21 21 C 1.53032 * 109.27911 * 302.35008 * 20 19 18 22 22 N 1.46841 * 109.46669 * 304.99902 * 16 14 13 23 23 C 1.46839 * 111.00234 * 301.83416 * 10 9 7 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.46476 * 294.17097 * 11 10 9 28 28 H 1.09003 * 109.46821 * 54.15380 * 11 10 9 29 29 H 1.09001 * 109.50321 * 179.12207 * 12 11 10 30 30 H 1.08999 * 109.50410 * 299.19360 * 12 11 10 31 31 H 1.08994 * 109.51809 * 62.24931 * 13 12 11 32 32 H 1.08995 * 109.52117 * 182.44169 * 13 12 11 33 33 H 1.08996 * 109.50271 * 300.74012 * 18 16 14 34 34 H 1.08997 * 109.50763 * 60.86133 * 18 16 14 35 35 H 1.08997 * 109.52234 * 297.75044 * 19 18 16 36 36 H 1.09000 * 109.57721 * 177.58750 * 19 18 16 37 37 H 1.09000 * 109.50322 * 182.40195 * 20 19 18 38 38 H 1.09008 * 109.53310 * 62.30824 * 20 19 18 39 39 H 1.08995 * 109.46482 * 299.15369 * 21 20 19 40 40 H 1.09007 * 109.46178 * 179.19573 * 21 20 19 41 41 H 1.00898 * 111.00186 * 305.85763 * 22 16 14 42 42 H 1.08998 * 109.46586 * 305.85726 * 23 10 9 43 43 H 1.09001 * 109.46136 * 65.82255 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0010 -2.5792 -0.0001 11 6 3.6521 -3.2605 -1.2532 12 6 4.3002 -4.6467 -1.2793 13 6 3.8047 -5.4591 -0.0797 14 6 4.1376 -4.7045 1.2103 15 1 5.2187 -4.6021 1.3033 16 6 3.5927 -5.4805 2.4111 17 1 3.7509 -4.9006 3.3203 18 6 4.3240 -6.8199 2.5270 19 6 3.7617 -7.6014 3.7177 20 6 2.2551 -7.7955 3.5252 21 6 1.5839 -6.4279 3.3803 22 7 2.1556 -5.7202 2.2276 23 6 3.4942 -3.3167 1.1642 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 2.5692 -3.3647 -1.3207 28 1 4.0140 -2.6747 -2.0982 29 1 4.0283 -5.1583 -2.2026 30 1 5.3839 -4.5428 -1.2265 31 1 2.7259 -5.5964 -0.1534 32 1 4.2968 -6.4316 -0.0702 33 1 4.1776 -7.3947 1.6126 34 1 5.3885 -6.6414 2.6789 35 1 3.9426 -7.0445 4.6370 36 1 4.2494 -8.5743 3.7791 37 1 1.8415 -8.3141 4.3901 38 1 2.0755 -8.3860 2.6267 39 1 1.7514 -5.8434 4.2849 40 1 0.5129 -6.5631 3.2287 41 1 1.6642 -4.8563 2.0535 42 1 3.7412 -2.7715 2.0751 43 1 2.4120 -3.4204 1.0854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692906604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:47 Heat of formation + Delta-G solvation = -36.587195 kcal Electronic energy + Delta-G solvation = -19889.117155 eV Core-core repulsion = 17159.916312 eV Total energy + Delta-G solvation = -2729.200844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73055 -38.77568 -35.52062 -34.09366 -33.11484 -32.48163 -29.93713 -29.04870 -25.55643 -25.16100 -23.96737 -23.03721 -21.86060 -20.77650 -19.97769 -18.79772 -17.47682 -16.70272 -16.13455 -15.87502 -15.74561 -15.34451 -15.17994 -14.73559 -14.51343 -14.49020 -14.06582 -13.93539 -13.65924 -13.32326 -13.25180 -12.88216 -12.80514 -12.25788 -12.19248 -12.00014 -11.90757 -11.74726 -11.72908 -11.60731 -11.36301 -11.14657 -10.93968 -10.80488 -10.74426 -9.30733 -8.94590 -8.32296 -6.37043 1.33840 1.35046 1.47083 2.32564 3.02682 3.25770 3.31234 3.84184 3.90810 3.99115 4.09547 4.20996 4.26872 4.34862 4.46331 4.55622 4.57388 4.67775 4.71988 4.76110 4.84092 4.90713 4.97382 5.00593 5.04853 5.06888 5.13365 5.14245 5.19689 5.24500 5.27295 5.29817 5.36716 5.41027 5.49063 5.56724 5.71514 6.11994 6.23368 6.36009 6.38981 6.48667 6.70011 7.29987 8.83710 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.005861 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.964593 B = 4776.073351 C = 5309.618172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.547 4.547 8 H 0.036 0.964 9 C 0.158 3.842 10 N -0.529 5.529 11 C 0.061 3.939 12 C -0.109 4.109 13 C -0.095 4.095 14 C -0.069 4.069 15 H 0.083 0.917 16 C 0.098 3.902 17 H 0.025 0.975 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.111 4.111 21 C 0.053 3.947 22 N -0.691 5.691 23 C 0.073 3.927 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.005 0.995 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.071 0.929 41 H 0.334 0.666 42 H 0.047 0.953 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.824 -14.562 5.355 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.586 4.586 8 H 0.054 0.946 9 C 0.031 3.969 10 N -0.252 5.252 11 C -0.067 4.067 12 C -0.147 4.147 13 C -0.133 4.133 14 C -0.088 4.088 15 H 0.101 0.899 16 C -0.012 4.012 17 H 0.043 0.957 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.076 4.076 22 N -0.323 5.323 23 C -0.056 4.056 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.152 0.848 42 H 0.066 0.934 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.293 -15.014 5.027 18.885 hybrid contribution -1.514 2.031 0.535 2.589 sum 8.780 -12.983 5.562 16.630 Atomic orbital electron populations 1.70080 1.08255 1.28064 1.52278 1.25899 0.95506 1.03311 0.93925 0.85706 0.79482 0.78514 0.79216 1.19171 1.20998 1.17153 1.21897 0.92630 0.93234 1.50834 0.94556 1.20054 0.91998 0.88247 0.96646 1.62387 1.57808 1.02370 1.02601 1.21944 0.96863 0.95845 0.92043 1.21608 1.00758 0.93449 0.98869 1.21426 1.00918 0.98085 0.92852 1.21216 0.99986 0.92348 0.95232 0.89920 1.21453 0.88185 0.96214 0.95387 0.95727 1.21628 0.98997 0.94440 0.99361 1.21582 0.95643 1.00699 0.97716 1.21561 0.95566 0.95637 1.02164 1.21986 0.99013 0.95607 0.90967 1.60422 1.03400 1.27734 1.40739 1.21895 0.96506 0.94259 0.92890 0.92584 0.95481 0.95528 0.97616 0.92150 0.90747 0.90768 0.92984 0.90282 0.90953 0.90647 0.92558 0.90277 0.90420 0.91618 0.95978 0.91078 0.84770 0.93436 0.96568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.68 5.47 84.66 0.46 1.14 16 3 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.55 -31.38 8.29 25.60 0.21 -31.16 16 8 H 0.04 2.32 6.08 -2.91 -0.02 2.30 16 9 C 0.16 7.70 4.20 85.56 0.36 8.06 16 10 N -0.53 -22.23 4.86 -900.92 -4.38 -26.60 16 11 C 0.06 2.41 5.14 86.33 0.44 2.86 16 12 C -0.11 -3.23 6.09 30.65 0.19 -3.04 16 13 C -0.10 -2.72 4.80 30.67 0.15 -2.57 16 14 C -0.07 -2.05 2.18 -10.74 -0.02 -2.07 16 15 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 16 C 0.10 2.59 2.19 44.94 0.10 2.69 16 17 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 18 C -0.11 -2.20 5.15 30.65 0.16 -2.04 16 19 C -0.12 -2.13 6.00 30.68 0.18 -1.95 16 20 C -0.11 -2.13 6.09 30.65 0.19 -1.95 16 21 C 0.05 1.28 6.55 86.32 0.57 1.85 16 22 N -0.69 -19.74 5.49 -491.70 -2.70 -22.43 16 23 C 0.07 2.86 4.08 86.33 0.35 3.22 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.03 1.30 7.49 -2.39 -0.02 1.28 16 26 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 27 H 0.01 0.25 7.03 -2.39 -0.02 0.24 16 28 H 0.06 2.33 8.06 -2.39 -0.02 2.31 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 32 H 0.08 1.88 6.68 -2.39 -0.02 1.86 16 33 H 0.07 1.52 6.59 -2.39 -0.02 1.50 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.33 11.29 6.98 -89.70 -0.63 10.66 16 42 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.02 0.74 5.02 -2.39 -0.01 0.72 16 Total: -1.00 -63.79 313.30 -1.27 -65.07 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.28 Total: 21.65 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.33 Total: -24.97 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -6.77 Total: -108.05 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -63.79 -1.27 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.478 kcal (2) G-P(sol) polarization free energy of solvation -63.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds