Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 111.00268 * 2 1 4 4 H 1.08995 * 112.84715 * 336.19471 * 3 2 1 5 5 C 1.53958 * 113.66654 * 107.44049 * 3 2 1 6 6 C 1.53779 * 87.01862 * 139.93175 * 5 3 2 7 7 H 1.09008 * 113.61044 * 89.23100 * 6 5 3 8 8 C 1.50698 * 113.61160 * 220.04512 * 6 5 3 9 9 O 1.21285 * 119.99686 * 99.14449 * 8 6 5 10 10 N 1.34775 * 120.00318 * 279.13697 * 8 6 5 11 11 C 1.46499 * 120.00337 * 180.02562 * 10 8 6 12 12 C 1.50701 * 109.46992 * 269.99986 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.46502 * 120.00005 * 0.02562 * 10 8 6 21 21 C 1.52991 * 117.50141 * 188.74738 * 20 10 8 22 22 C 1.53002 * 117.49871 * 120.08536 * 20 10 8 23 23 C 1.53776 * 113.61298 * 204.99961 * 3 2 1 24 24 H 1.09000 * 109.47223 * 59.99720 * 1 2 3 25 25 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47179 * 300.00481 * 1 2 3 27 27 H 1.00905 * 111.00016 * 123.95280 * 2 1 3 28 28 H 1.08999 * 113.61438 * 25.41078 * 5 3 2 29 29 H 1.09001 * 113.66230 * 254.46224 * 5 3 2 30 30 H 1.09002 * 109.47391 * 149.99977 * 11 10 8 31 31 H 1.09001 * 109.46813 * 30.00033 * 11 10 8 32 32 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 33 33 H 1.09007 * 115.54983 * 334.41882 * 20 10 8 34 34 H 1.09001 * 117.50086 * 0.02562 * 21 20 10 35 35 H 1.09001 * 117.49949 * 145.02151 * 21 20 10 36 36 H 1.09001 * 117.49599 * 214.98555 * 22 20 10 37 37 H 1.08998 * 117.49748 * 359.97438 * 22 20 10 38 38 H 1.09002 * 113.61493 * 105.47493 * 23 3 2 39 39 H 1.08993 * 113.61794 * 334.56354 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.2892 2.0959 -0.4054 5 6 2.6115 1.7969 1.3453 6 6 3.7138 2.4924 0.5290 7 1 3.4789 3.5246 0.2688 8 6 5.0914 2.3367 1.1196 9 8 5.8481 1.4969 0.6801 10 7 5.4827 3.1307 2.1359 11 6 6.8222 2.9797 2.7096 12 6 6.7755 1.9832 3.8392 13 1 5.8415 1.5095 4.1031 14 6 7.9253 1.6756 4.5351 15 7 7.8845 0.8057 5.5206 16 14 9.5408 2.4945 4.0783 17 1 9.6995 3.7470 4.8602 18 1 10.6658 1.5746 4.3837 19 1 9.5416 2.8130 2.6278 20 6 4.5685 4.1448 2.6669 21 6 5.1341 5.1475 3.6747 22 6 4.1826 4.0440 4.1440 23 6 3.4084 1.4888 -0.5955 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8306 -0.5261 0.7814 28 1 2.9731 0.9608 1.9438 29 1 1.9876 2.4869 1.9134 30 1 7.1660 3.9423 3.0882 31 1 7.5089 2.6254 1.9407 32 1 8.6934 0.5895 6.0104 33 1 3.8094 4.5037 1.9718 34 1 6.1865 5.0529 3.9423 35 1 4.7468 6.1659 3.6428 36 1 3.1698 4.3369 4.4207 37 1 4.6086 3.2229 4.7206 38 1 3.4270 1.9305 -1.5918 39 1 3.9883 0.5684 -0.5285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693597712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = 20.969173 kcal Electronic energy + Delta-G solvation = -19221.884672 eV Core-core repulsion = 16359.346565 eV Total energy + Delta-G solvation = -2862.538107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08858 -38.10505 -36.59897 -33.89433 -33.11507 -32.01524 -28.59156 -26.23495 -25.50652 -24.00098 -22.49675 -21.97832 -21.41421 -19.82586 -18.02454 -17.22839 -16.78234 -15.86172 -15.41216 -15.01071 -14.75935 -14.14687 -13.99682 -13.65737 -13.48901 -13.25194 -12.63189 -12.29280 -12.08577 -11.92828 -11.74085 -11.69202 -11.28282 -10.94478 -10.83156 -10.73182 -10.56758 -10.35047 -10.34096 -10.08362 -9.97167 -9.44397 -8.91577 -8.58738 -8.39622 -7.54069 -6.09286 -4.07186 3.25708 3.28859 3.34535 3.39343 3.73319 4.21818 4.34380 4.39291 4.60779 4.79629 4.93530 4.98051 5.13204 5.23339 5.24620 5.28735 5.35749 5.42082 5.48360 5.54149 5.74335 5.79542 5.93913 6.01014 6.10587 6.14847 6.21089 6.43560 6.47058 6.71622 6.85376 6.99135 7.04047 7.30889 7.36330 7.60854 8.29848 8.46899 8.92755 9.02174 9.51530 11.03890 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.006083 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.908701 B = 4602.076841 C = 4908.329144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.685 5.685 3 C 0.064 3.936 4 H 0.095 0.905 5 C -0.144 4.144 6 C -0.134 4.134 7 H 0.104 0.896 8 C 0.522 3.478 9 O -0.537 6.537 10 N -0.565 5.565 11 C 0.210 3.790 12 C -0.523 4.523 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.871 3.129 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.073 3.927 21 C -0.187 4.187 22 C -0.189 4.189 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.347 0.653 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 6.607 -7.894 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.315 5.315 3 C -0.047 4.047 4 H 0.113 0.887 5 C -0.183 4.183 6 C -0.156 4.156 7 H 0.122 0.878 8 C 0.309 3.691 9 O -0.414 6.414 10 N -0.294 5.294 11 C 0.090 3.910 12 C -0.561 4.561 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.536 5.536 16 Si 0.698 3.302 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.033 4.033 21 C -0.225 4.225 22 C -0.227 4.227 23 C -0.143 4.143 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.166 0.834 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.757 5.966 -8.689 16.548 hybrid contribution 0.709 0.774 1.057 1.490 sum -12.048 6.740 -7.632 15.774 Atomic orbital electron populations 1.22207 0.88247 1.01666 1.00114 1.60373 1.07386 1.13513 1.50187 1.23116 0.95970 0.89644 0.95953 0.88686 1.23578 0.96599 1.01125 0.97031 1.22558 0.93592 1.00496 0.98988 0.87758 1.20061 0.88145 0.81004 0.79874 1.90666 1.54897 1.34323 1.61517 1.47393 1.15594 1.33281 1.33162 1.19738 0.79466 0.96936 0.94881 1.21291 0.96973 1.23803 1.14070 0.90686 1.24841 0.98622 0.94791 0.94674 1.69889 1.28794 1.33384 1.21495 0.86915 0.84054 0.79599 0.79645 1.20114 1.20926 1.18855 1.21519 0.96451 0.94096 0.91212 1.23288 1.01267 0.94301 1.03658 1.23479 0.98975 1.02185 0.98102 1.22943 0.95031 0.99686 0.96622 0.91931 0.91673 0.96046 0.83372 0.89209 0.91071 0.95357 0.94134 0.92597 0.86588 0.87505 0.89011 0.89511 0.86523 0.91331 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.54 60.06 0.63 0.89 16 2 N -0.68 -8.01 6.97 -113.05 -0.79 -8.80 16 3 C 0.06 0.74 4.18 -66.81 -0.28 0.47 16 4 H 0.10 0.95 7.87 -51.93 -0.41 0.55 16 5 C -0.14 -1.89 7.17 -25.83 -0.19 -2.07 16 6 C -0.13 -1.97 2.92 -90.96 -0.27 -2.24 16 7 H 0.10 1.26 7.18 -51.92 -0.37 0.88 16 8 C 0.52 10.71 7.20 -10.99 -0.08 10.63 16 9 O -0.54 -13.39 15.49 5.55 0.09 -13.31 16 10 N -0.56 -11.68 2.80 -167.47 -0.47 -12.15 16 11 C 0.21 5.14 3.84 -5.19 -0.02 5.12 16 12 C -0.52 -14.76 8.94 -34.44 -0.31 -15.07 16 13 H 0.08 2.32 7.56 -52.49 -0.40 1.92 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 16 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C 0.07 1.18 5.95 -67.93 -0.40 0.77 16 21 C -0.19 -2.90 9.80 -26.70 -0.26 -3.16 16 22 C -0.19 -3.06 10.19 -26.69 -0.27 -3.33 16 23 C -0.10 -1.47 7.20 -25.92 -0.19 -1.65 16 24 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.35 4.13 8.29 -39.29 -0.33 3.81 16 28 H 0.09 1.39 7.78 -51.93 -0.40 0.99 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.66 5.23 -51.93 -0.27 0.39 16 31 H 0.04 1.09 6.48 -51.93 -0.34 0.75 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.12 1.48 6.59 -51.92 -0.34 1.14 16 34 H 0.11 1.91 6.02 -51.93 -0.31 1.60 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 2.38 6.73 -51.93 -0.35 2.03 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.69 7.45 -51.93 -0.39 1.31 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -32.82 313.31 -8.10 -40.92 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.03 Total: 6.07 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.73 Total: -7.64 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.48 Total: -47.64 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.82 -8.10 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693597712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.892 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds