Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.48646 * 111.00193 * 69.86980 * 12 11 10 14 14 C 1.54624 * 104.64606 * 158.57748 * 13 12 11 15 15 H 1.08995 * 110.40021 * 95.20790 * 14 13 12 16 16 C 1.53005 * 110.39966 * 217.49665 * 14 13 12 17 17 N 1.46895 * 109.46835 * 293.54735 * 16 14 13 18 18 C 1.53358 * 104.67022 * 336.29284 * 14 13 12 19 19 C 1.52786 * 115.65835 * 230.71282 * 18 14 13 20 20 C 1.53971 * 86.78171 * 217.46263 * 19 18 14 21 21 C 1.52795 * 115.62845 * 129.77046 * 18 14 13 22 22 C 1.48796 * 110.99938 * 185.49727 * 12 11 10 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 29 29 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 30 30 H 1.08998 * 110.40260 * 277.36949 * 13 12 11 31 31 H 1.08995 * 110.40191 * 39.78831 * 13 12 11 32 32 H 1.09001 * 109.46869 * 53.54565 * 16 14 13 33 33 H 1.08991 * 109.47466 * 173.54463 * 16 14 13 34 34 H 1.00905 * 111.00176 * 56.04451 * 17 16 14 35 35 H 1.00903 * 111.00074 * 179.97438 * 17 16 14 36 36 H 1.09001 * 113.66457 * 331.92746 * 19 18 14 37 37 H 1.08998 * 113.66726 * 102.99376 * 19 18 14 38 38 H 1.08998 * 113.58111 * 270.09885 * 20 19 18 39 39 H 1.08998 * 113.58189 * 139.28406 * 20 19 18 40 40 H 1.09001 * 113.66967 * 257.03681 * 21 18 14 41 41 H 1.09003 * 113.66657 * 28.00070 * 21 18 14 42 42 H 1.09002 * 110.45509 * 320.45556 * 22 12 11 43 43 H 1.08991 * 110.45746 * 83.02657 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.7744 -4.6849 -1.2813 14 6 6.7819 -5.8564 -1.3371 15 1 6.3149 -6.7763 -0.9853 16 6 7.3096 -6.0387 -2.7617 17 7 6.2149 -6.4792 -3.6366 18 6 7.9179 -5.4370 -0.3961 19 6 9.3276 -5.5315 -0.9775 20 6 9.7783 -5.9994 0.4184 21 6 8.3320 -6.4765 0.6444 22 6 7.5219 -4.0632 0.1619 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 3.6545 -3.1486 0.9003 27 1 3.6618 -3.1522 -0.8796 28 1 5.9188 -2.1245 -0.8715 29 1 5.9108 -2.1211 0.9084 30 1 4.7519 -5.0611 -1.3139 31 1 5.9516 -3.9918 -2.1036 32 1 7.7070 -5.0913 -3.1259 33 1 8.1002 -6.7889 -2.7632 34 1 5.4417 -5.8317 -3.6024 35 1 6.5380 -6.6064 -4.5840 36 1 9.4323 -6.2940 -1.7493 37 1 9.7449 -4.5685 -1.2719 38 1 10.0762 -5.1833 1.0768 39 1 10.5061 -6.8104 0.3926 40 1 7.9541 -6.2684 1.6454 41 1 8.1549 -7.5050 0.3298 42 1 7.9824 -3.2671 -0.4232 43 1 7.8079 -3.9810 1.2104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693689682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = 10.490893 kcal Electronic energy + Delta-G solvation = -19105.996904 eV Core-core repulsion = 16378.837520 eV Total energy + Delta-G solvation = -2727.159385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73685 -36.89030 -35.19918 -33.66024 -31.78759 -29.86340 -27.91354 -26.62503 -25.94435 -24.21920 -22.84715 -21.42160 -20.52726 -19.89551 -18.19607 -16.70579 -16.36330 -15.99865 -15.42242 -14.99538 -14.81773 -14.17420 -14.11455 -13.88821 -13.36400 -13.22512 -12.78257 -12.54491 -12.43996 -12.19574 -11.78873 -11.67318 -11.51368 -11.05412 -10.98604 -10.89125 -10.65699 -10.41164 -10.23037 -10.17160 -9.91546 -9.65351 -9.53083 -9.14550 -8.87563 -8.51360 -8.27647 -6.01615 -3.99115 3.31279 3.38705 3.42676 4.01192 4.23104 4.40137 4.43862 4.47131 4.62047 4.69913 4.82307 5.08360 5.16138 5.29387 5.32192 5.34875 5.43910 5.54580 5.57229 5.59659 5.64464 5.69047 5.74701 5.78191 5.85134 5.94278 6.06622 6.18039 6.21674 6.24442 6.29518 6.54632 6.60323 6.87959 6.95435 7.08622 7.22894 7.27296 7.38631 7.48734 7.83042 8.58111 9.04288 9.61093 11.12043 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.004283 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.048906 B = 6535.688220 C = 6998.465684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.095 4.095 11 C 0.043 3.957 12 N -0.507 5.507 13 C 0.038 3.962 14 C -0.079 4.079 15 H 0.088 0.912 16 C 0.071 3.929 17 N -0.852 5.852 18 C -0.078 4.078 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.122 4.122 22 C 0.054 3.946 23 H 0.262 0.738 24 H 0.007 0.993 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.339 0.661 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.464 -11.948 -3.550 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.133 4.133 11 C -0.085 4.085 12 N -0.230 5.230 13 C -0.090 4.090 14 C -0.098 4.098 15 H 0.107 0.893 16 C -0.060 4.060 17 N -0.382 5.382 18 C -0.079 4.079 19 C -0.172 4.172 20 C -0.179 4.179 21 C -0.159 4.159 22 C -0.074 4.074 23 H 0.072 0.928 24 H 0.026 0.974 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.060 0.940 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.994 -12.716 -2.619 23.840 hybrid contribution 0.864 2.406 -1.236 2.840 sum 20.858 -10.310 -3.856 23.585 Atomic orbital electron populations 1.69920 1.06282 1.26798 1.51391 1.25040 0.94723 0.99127 0.94674 0.86776 0.80376 0.83702 0.78399 1.20411 1.21384 1.19069 1.21154 0.89504 0.94458 1.50445 0.91007 1.19556 0.97191 0.92375 0.95993 1.21413 0.90772 0.99449 1.01644 1.22484 0.98376 0.87482 1.00122 1.65461 1.10002 1.17067 1.30474 1.23220 1.00127 0.94923 0.90715 1.21798 0.95034 0.99289 0.93703 0.89320 1.21909 0.93473 0.98130 0.92476 1.58745 1.10864 1.55275 1.13327 1.21874 0.93780 0.95864 0.96381 1.22990 0.95500 1.01600 0.97117 1.22887 0.96925 1.00869 0.97229 1.22818 0.95544 0.98312 0.99276 1.22804 0.89358 0.94400 1.00812 0.92794 0.97430 0.96676 0.91944 0.93004 0.95346 0.91219 0.89702 0.94394 0.95702 0.90850 0.84341 0.84927 0.89616 0.91651 0.90325 0.91695 0.90987 0.90088 0.93962 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.95 5.21 -26.74 -0.14 -2.09 16 11 C 0.04 0.73 4.81 -3.83 -0.02 0.71 16 12 N -0.51 -7.57 5.37 -230.12 -1.24 -8.81 16 13 C 0.04 0.52 4.47 -2.00 -0.01 0.51 16 14 C -0.08 -0.88 3.07 -89.58 -0.27 -1.16 16 15 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 16 C 0.07 0.68 5.11 -3.82 -0.02 0.66 16 17 N -0.85 -8.18 9.62 -10.37 -0.10 -8.27 16 18 C -0.08 -0.81 1.14 -154.30 -0.18 -0.98 16 19 C -0.13 -1.15 6.48 -26.33 -0.17 -1.32 16 20 C -0.14 -1.15 7.94 -25.73 -0.20 -1.35 16 21 C -0.12 -1.15 7.19 -26.33 -0.19 -1.34 16 22 C 0.05 0.67 5.72 -2.53 -0.01 0.65 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.01 0.18 7.58 -51.93 -0.39 -0.21 16 25 H 0.01 0.37 7.19 -51.93 -0.37 -0.01 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.05 1.07 7.27 -51.93 -0.38 0.69 16 28 H 0.03 0.47 7.88 -51.93 -0.41 0.07 16 29 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 30 H 0.08 1.24 7.79 -51.93 -0.40 0.84 16 31 H 0.04 0.52 7.48 -51.93 -0.39 0.13 16 32 H 0.02 0.25 7.98 -51.93 -0.41 -0.17 16 33 H 0.07 0.65 6.41 -51.93 -0.33 0.32 16 34 H 0.34 3.40 8.19 -39.29 -0.32 3.08 16 35 H 0.34 2.61 9.08 -39.29 -0.36 2.26 16 36 H 0.09 0.67 5.98 -51.93 -0.31 0.36 16 37 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 41 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 42 H 0.04 0.52 7.89 -51.93 -0.41 0.11 16 43 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -30.88 327.09 -9.91 -40.79 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.85 Total: 1.30 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.76 Total: -19.74 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.56 Total: -44.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.88 -9.91 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693689682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.281 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds