Wall clock time and date at job start Mon Mar 30 2020 04:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.48646 * 111.00193 * 69.86980 * 12 11 10 14 14 C 1.54624 * 104.64606 * 158.57748 * 13 12 11 15 15 H 1.08995 * 110.40021 * 95.20790 * 14 13 12 16 16 C 1.53005 * 110.39966 * 217.49665 * 14 13 12 17 17 N 1.46895 * 109.46835 * 293.54735 * 16 14 13 18 18 C 1.53358 * 104.67022 * 336.29284 * 14 13 12 19 19 C 1.52786 * 115.65835 * 230.71282 * 18 14 13 20 20 C 1.53971 * 86.78171 * 217.46263 * 19 18 14 21 21 C 1.52795 * 115.62845 * 129.77046 * 18 14 13 22 22 C 1.48796 * 110.99938 * 185.49727 * 12 11 10 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 29 29 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 30 30 H 1.08998 * 110.40260 * 277.36949 * 13 12 11 31 31 H 1.08995 * 110.40191 * 39.78831 * 13 12 11 32 32 H 1.09001 * 109.46869 * 53.54565 * 16 14 13 33 33 H 1.08991 * 109.47466 * 173.54463 * 16 14 13 34 34 H 1.00905 * 111.00176 * 56.04451 * 17 16 14 35 35 H 1.00903 * 111.00074 * 179.97438 * 17 16 14 36 36 H 1.09001 * 113.66457 * 331.92746 * 19 18 14 37 37 H 1.08998 * 113.66726 * 102.99376 * 19 18 14 38 38 H 1.08998 * 113.58111 * 270.09885 * 20 19 18 39 39 H 1.08998 * 113.58189 * 139.28406 * 20 19 18 40 40 H 1.09001 * 113.66967 * 257.03681 * 21 18 14 41 41 H 1.09003 * 113.66657 * 28.00070 * 21 18 14 42 42 H 1.09002 * 110.45509 * 320.45556 * 22 12 11 43 43 H 1.08991 * 110.45746 * 83.02657 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.7744 -4.6849 -1.2813 14 6 6.7819 -5.8564 -1.3371 15 1 6.3149 -6.7763 -0.9853 16 6 7.3096 -6.0387 -2.7617 17 7 6.2149 -6.4792 -3.6366 18 6 7.9179 -5.4370 -0.3961 19 6 9.3276 -5.5315 -0.9775 20 6 9.7783 -5.9994 0.4184 21 6 8.3320 -6.4765 0.6444 22 6 7.5219 -4.0632 0.1619 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 3.6545 -3.1486 0.9003 27 1 3.6618 -3.1522 -0.8796 28 1 5.9188 -2.1245 -0.8715 29 1 5.9108 -2.1211 0.9084 30 1 4.7519 -5.0611 -1.3139 31 1 5.9516 -3.9918 -2.1036 32 1 7.7070 -5.0913 -3.1259 33 1 8.1002 -6.7889 -2.7632 34 1 5.4417 -5.8317 -3.6024 35 1 6.5380 -6.6064 -4.5840 36 1 9.4323 -6.2940 -1.7493 37 1 9.7449 -4.5685 -1.2719 38 1 10.0762 -5.1833 1.0768 39 1 10.5061 -6.8104 0.3926 40 1 7.9541 -6.2684 1.6454 41 1 8.1549 -7.5050 0.3298 42 1 7.9824 -3.2671 -0.4232 43 1 7.8079 -3.9810 1.2104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693689682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:24 Heat of formation + Delta-G solvation = -11.303727 kcal Electronic energy + Delta-G solvation = -19106.941990 eV Core-core repulsion = 16378.837520 eV Total energy + Delta-G solvation = -2728.104470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60699 -38.00109 -36.18599 -35.41653 -33.66372 -31.04324 -29.20143 -27.82048 -26.82210 -25.47463 -23.90009 -22.74759 -21.84738 -21.22323 -19.07956 -18.83454 -17.28310 -16.87613 -16.49249 -16.27587 -16.08448 -15.64066 -15.20462 -15.08190 -14.72823 -14.27197 -14.16861 -13.85407 -13.71691 -13.30318 -13.08606 -13.00367 -12.62058 -12.52115 -12.35463 -11.90955 -11.82624 -11.80888 -11.53136 -11.44659 -11.32556 -11.13678 -10.97549 -10.89131 -10.77633 -9.62324 -9.43943 -8.30547 -6.35182 1.34198 1.36847 1.49102 2.35296 2.96346 3.04440 3.41434 3.54658 3.60016 3.83909 3.98665 4.02962 4.11890 4.19395 4.25048 4.44584 4.45594 4.49736 4.62807 4.63752 4.67278 4.78945 4.83873 4.85045 4.91790 4.92859 5.02103 5.06161 5.07837 5.14803 5.18180 5.32533 5.45828 5.48814 5.55984 5.59423 5.64432 5.92290 6.07123 6.21672 6.28791 6.55511 6.72812 7.29336 8.86652 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.004283 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.048906 B = 6535.688220 C = 6998.465684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.085 4.085 11 C 0.056 3.944 12 N -0.523 5.523 13 C 0.038 3.962 14 C -0.071 4.071 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.861 5.861 18 C -0.081 4.081 19 C -0.126 4.126 20 C -0.134 4.134 21 C -0.124 4.124 22 C 0.055 3.945 23 H 0.267 0.733 24 H 0.018 0.982 25 H 0.021 0.979 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.340 0.660 35 H 0.350 0.650 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.626 -11.466 -3.969 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.123 4.123 11 C -0.073 4.073 12 N -0.246 5.246 13 C -0.090 4.090 14 C -0.091 4.091 15 H 0.094 0.906 16 C -0.054 4.054 17 N -0.391 5.391 18 C -0.082 4.082 19 C -0.164 4.164 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.073 4.073 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.179 -12.262 -3.045 26.399 hybrid contribution -0.230 2.149 -1.096 2.424 sum 22.950 -10.112 -4.142 25.418 Atomic orbital electron populations 1.70079 1.08389 1.28226 1.52641 1.26075 0.95664 1.03688 0.93996 0.85596 0.79489 0.77906 0.79271 1.19024 1.20814 1.16917 1.21497 0.92215 0.93036 1.50513 0.95428 1.19486 0.93855 0.94866 0.96447 1.21219 0.93779 0.96854 1.00454 1.22225 0.95284 0.89045 1.00712 1.65381 1.12178 1.15699 1.31354 1.23194 0.99903 0.95747 0.90117 1.21725 0.94685 0.97519 0.95158 0.90559 1.21866 0.93578 0.98666 0.91267 1.58755 1.10921 1.55203 1.14255 1.21903 0.94555 0.95019 0.96748 1.22977 0.93561 1.02196 0.97633 1.22858 0.96187 1.01263 0.96810 1.22844 0.96660 0.98301 0.98377 1.22854 0.87326 0.95782 1.01296 0.92447 0.96389 0.96083 0.93594 0.93871 0.94693 0.90608 0.91683 0.94446 0.95501 0.89458 0.84767 0.83662 0.88479 0.91299 0.90127 0.90332 0.92020 0.89619 0.93477 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 2 C 0.00 0.13 5.47 84.66 0.46 0.60 16 3 Si 0.95 44.97 27.47 68.60 1.88 46.85 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.08 -3.53 5.21 30.59 0.16 -3.37 16 11 C 0.06 1.82 4.81 86.30 0.41 2.24 16 12 N -0.52 -15.23 5.37 -881.98 -4.74 -19.97 16 13 C 0.04 1.03 4.47 86.52 0.39 1.42 16 14 C -0.07 -1.51 3.07 -10.12 -0.03 -1.55 16 15 H 0.08 1.81 7.95 -2.39 -0.02 1.80 16 16 C 0.08 1.33 5.11 86.31 0.44 1.77 16 17 N -0.86 -15.46 9.62 -186.73 -1.80 -17.25 16 18 C -0.08 -1.52 1.14 -52.05 -0.06 -1.58 16 19 C -0.13 -1.77 6.48 30.85 0.20 -1.57 16 20 C -0.13 -1.78 7.94 31.24 0.25 -1.53 16 21 C -0.12 -2.11 7.19 30.85 0.22 -1.89 16 22 C 0.05 1.25 5.72 86.09 0.49 1.75 16 23 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 24 H 0.02 0.83 7.58 -2.38 -0.02 0.81 16 25 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.04 1.83 7.27 -2.39 -0.02 1.81 16 28 H 0.03 1.10 7.88 -2.39 -0.02 1.08 16 29 H 0.08 2.39 8.13 -2.39 -0.02 2.37 16 30 H 0.06 1.97 7.79 -2.39 -0.02 1.95 16 31 H 0.04 1.00 7.48 -2.39 -0.02 0.98 16 32 H 0.03 0.47 7.98 -2.39 -0.02 0.45 16 33 H 0.09 1.29 6.41 -2.39 -0.02 1.27 16 34 H 0.34 6.57 8.19 -89.69 -0.73 5.83 16 35 H 0.35 4.85 9.08 -89.69 -0.81 4.03 16 36 H 0.10 1.17 5.98 -2.39 -0.01 1.15 16 37 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.17 8.04 -2.39 -0.02 1.15 16 41 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 42 H 0.05 1.04 7.89 -2.39 -0.02 1.02 16 43 H 0.08 1.84 7.90 -2.39 -0.02 1.82 16 Total: -1.00 -67.37 327.09 -1.67 -69.04 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.63 Total: 18.06 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.30 Total: -35.82 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -6.23 Total: -98.13 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -67.37 -1.67 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693689682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.741 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds