Wall clock time and date at job start Mon Mar 30 2020 04:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00302 * 2 1 4 4 H 1.48499 * 109.46951 * 269.99818 * 3 2 1 5 5 H 1.48500 * 109.47295 * 29.99602 * 3 2 1 6 6 H 1.48504 * 109.47269 * 149.99569 * 3 2 1 7 7 C 1.37877 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00170 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47321 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47034 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46923 * 174.87349 * 11 10 9 13 13 C 1.48646 * 110.99874 * 175.66177 * 12 11 10 14 14 C 1.54626 * 104.64599 * 201.42204 * 13 12 11 15 15 H 1.08997 * 110.39820 * 264.80137 * 14 13 12 16 16 C 1.52995 * 110.39719 * 142.50340 * 14 13 12 17 17 N 1.46904 * 109.47142 * 66.45645 * 16 14 13 18 18 C 1.53355 * 104.66845 * 23.70735 * 14 13 12 19 19 C 1.52802 * 115.63193 * 230.22508 * 18 14 13 20 20 C 1.53957 * 86.77919 * 217.42999 * 19 18 14 21 21 C 1.52786 * 115.65937 * 129.28768 * 18 14 13 22 22 C 1.48782 * 111.00151 * 60.03704 * 12 11 10 23 23 H 0.97003 * 119.99708 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46608 * 59.99623 * 9 7 2 25 25 H 1.09000 * 109.47332 * 300.00130 * 9 7 2 26 26 H 1.09002 * 109.46993 * 59.99971 * 10 9 7 27 27 H 1.09000 * 109.47179 * 300.00040 * 10 9 7 28 28 H 1.08997 * 109.46998 * 294.86991 * 11 10 9 29 29 H 1.09002 * 109.47094 * 54.87471 * 11 10 9 30 30 H 1.08999 * 110.40345 * 320.21217 * 13 12 11 31 31 H 1.09005 * 110.39911 * 82.51252 * 13 12 11 32 32 H 1.09003 * 109.46984 * 186.45637 * 16 14 13 33 33 H 1.08999 * 109.47697 * 306.45845 * 16 14 13 34 34 H 1.00892 * 111.00080 * 179.97438 * 17 16 14 35 35 H 1.00899 * 110.99696 * 303.95362 * 17 16 14 36 36 H 1.08993 * 113.66416 * 331.90369 * 19 18 14 37 37 H 1.09001 * 113.66422 * 102.95986 * 19 18 14 38 38 H 1.09001 * 113.58744 * 270.10297 * 20 19 18 39 39 H 1.09000 * 113.58826 * 139.28909 * 20 19 18 40 40 H 1.09003 * 113.66482 * 257.01609 * 21 18 14 41 41 H 1.08999 * 113.66508 * 27.97862 * 21 18 14 42 42 H 1.09005 * 110.46043 * 276.97088 * 22 12 11 43 43 H 1.09000 * 110.46180 * 39.53783 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4299 -6.1009 -0.1239 13 6 1.7322 -7.4096 -0.0236 14 6 2.8374 -8.4118 0.3825 15 1 3.2439 -8.9069 -0.4993 16 6 2.2849 -9.4453 1.3660 17 7 1.2877 -10.2835 0.6869 18 6 3.9122 -7.5518 1.0585 19 6 5.3389 -7.7575 0.5516 20 6 5.7914 -7.5752 2.0119 21 6 4.3831 -8.0374 2.4285 22 6 3.3939 -6.1081 1.0094 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.9238 -5.0859 0.9320 29 1 0.7866 -5.0058 -0.8409 30 1 0.9564 -7.3691 0.7411 31 1 1.3017 -7.6854 -0.9863 32 1 3.0991 -10.0720 1.7300 33 1 1.8169 -8.9331 2.2067 34 1 0.9079 -10.9749 1.3158 35 1 0.5548 -9.7189 0.2843 36 1 5.5234 -8.7570 0.1580 37 1 5.6844 -6.9676 -0.1153 38 1 6.0063 -6.5397 2.2758 39 1 6.5825 -8.2622 2.3124 40 1 3.9652 -7.4711 3.2609 41 1 4.2971 -9.1156 2.5638 42 1 4.2133 -5.4154 0.8170 43 1 2.8887 -5.8527 1.9409 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693689683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:27 Heat of formation + Delta-G solvation = -13.901020 kcal Electronic energy + Delta-G solvation = -19100.337544 eV Core-core repulsion = 16372.120446 eV Total energy + Delta-G solvation = -2728.217098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62383 -37.96569 -36.27251 -35.41652 -33.46726 -30.81789 -28.87253 -28.06275 -26.82136 -25.40694 -24.05661 -23.11258 -21.61344 -21.26652 -19.01738 -18.50417 -17.31111 -16.98911 -16.56280 -16.33645 -15.92570 -15.62137 -15.35506 -14.96994 -14.44699 -14.26572 -14.17246 -13.78108 -13.63671 -13.21781 -13.07705 -12.90266 -12.58244 -12.56404 -12.45706 -12.16824 -11.95945 -11.81058 -11.53891 -11.39499 -11.20275 -11.08074 -10.98839 -10.91595 -10.57381 -9.61094 -9.46316 -8.22070 -6.33415 1.38664 1.40427 1.51530 2.39532 2.96934 3.10998 3.41623 3.53128 3.60485 3.83690 3.98119 4.01983 4.14865 4.18132 4.25584 4.44164 4.47138 4.50544 4.62360 4.65576 4.66595 4.79240 4.82310 4.88337 4.91770 5.02318 5.05311 5.07429 5.13718 5.16277 5.18657 5.34239 5.45507 5.48304 5.58368 5.68917 5.82157 5.90792 6.03667 6.22888 6.24663 6.58430 6.82737 7.35895 8.90015 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.004199 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.027659 B = 6667.007145 C = 7337.329832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.088 4.088 11 C 0.058 3.942 12 N -0.518 5.518 13 C 0.035 3.965 14 C -0.069 4.069 15 H 0.084 0.916 16 C 0.077 3.923 17 N -0.857 5.857 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.138 4.138 21 C -0.127 4.127 22 C 0.057 3.943 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.010 1.010 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.350 0.650 35 H 0.342 0.658 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 -20.869 4.684 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.070 4.070 12 N -0.242 5.242 13 C -0.093 4.093 14 C -0.088 4.088 15 H 0.102 0.898 16 C -0.054 4.054 17 N -0.388 5.388 18 C -0.083 4.083 19 C -0.159 4.159 20 C -0.175 4.175 21 C -0.164 4.164 22 C -0.071 4.071 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.414 -20.905 3.696 22.836 hybrid contribution -1.284 1.673 1.318 2.486 sum 7.130 -19.233 5.014 21.116 Atomic orbital electron populations 1.70099 1.07817 1.27823 1.51631 1.25991 0.95794 1.03394 0.94604 0.85432 0.78657 0.78300 0.78583 1.19687 1.20535 1.18753 1.21669 0.93470 0.92381 1.50677 0.92375 1.18966 0.94348 0.93078 0.94720 1.21370 0.97986 0.92851 1.00399 1.22178 0.94312 0.90989 0.99531 1.65444 1.14948 1.01980 1.41811 1.23273 0.96021 0.89174 1.00835 1.21700 0.94186 0.94184 0.98719 0.89806 1.21847 0.95660 0.94016 0.93898 1.58739 1.20240 1.19766 1.40027 1.21897 0.95099 0.93443 0.97820 1.22838 0.93931 1.02248 0.96910 1.22861 0.97088 1.01610 0.95953 1.22985 0.96369 1.02055 0.95005 1.22785 0.95883 0.96482 0.91964 0.92709 0.98964 0.99159 0.93456 0.93059 0.95645 0.91468 0.94437 0.90093 0.89501 0.95839 0.83648 0.84595 0.88847 0.92339 0.90959 0.89987 0.91936 0.87874 0.91032 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -32.01 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.87 4.89 30.59 0.15 -3.72 16 11 C 0.06 2.15 4.91 86.30 0.42 2.57 16 12 N -0.52 -16.20 5.45 -881.96 -4.80 -21.01 16 13 C 0.03 0.87 5.23 86.52 0.45 1.33 16 14 C -0.07 -1.41 3.07 -10.12 -0.03 -1.44 16 15 H 0.08 1.83 7.95 -2.39 -0.02 1.81 16 16 C 0.08 1.26 5.11 86.30 0.44 1.70 16 17 N -0.86 -13.13 9.62 -186.71 -1.80 -14.93 16 18 C -0.08 -1.73 1.14 -52.05 -0.06 -1.79 16 19 C -0.12 -2.35 7.19 30.85 0.22 -2.12 16 20 C -0.14 -2.33 7.94 31.24 0.25 -2.08 16 21 C -0.13 -2.15 6.48 30.85 0.20 -1.95 16 22 C 0.06 1.60 4.57 86.10 0.39 2.00 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 26 H 0.05 2.03 7.24 -2.39 -0.02 2.01 16 27 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.03 0.94 7.98 -2.39 -0.02 0.92 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 30 H 0.04 0.94 7.56 -2.39 -0.02 0.92 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.09 1.24 6.41 -2.39 -0.02 1.23 16 33 H 0.02 0.41 7.98 -2.39 -0.02 0.39 16 34 H 0.35 4.05 9.08 -89.70 -0.81 3.23 16 35 H 0.34 5.25 8.19 -89.69 -0.73 4.51 16 36 H 0.09 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 41 H 0.10 1.39 5.97 -2.39 -0.01 1.38 16 42 H 0.07 2.17 7.60 -2.38 -0.02 2.16 16 43 H 0.04 1.08 7.86 -2.39 -0.02 1.06 16 Total: -1.00 -65.19 330.37 -1.58 -66.76 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.57 Total: 14.89 kcal Atomic # 6 Polarization: -38.52 SS G_CDS: 3.28 Total: -35.24 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -6.31 Total: -93.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.19 -1.58 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693689683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.863 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds