Wall clock time and date at job start Mon Mar 30 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.47079 * 2 1 4 4 C 1.46895 * 111.00690 * 298.39587 * 3 2 1 5 5 C 1.50701 * 109.46978 * 293.23479 * 4 3 2 6 6 H 1.07997 * 120.00217 * 354.96672 * 5 4 3 7 7 C 1.37882 * 119.99702 * 174.96912 * 5 4 3 8 8 N 1.31511 * 119.99881 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47272 * 89.99851 * 9 7 5 11 11 H 1.48497 * 109.46904 * 209.99932 * 9 7 5 12 12 H 1.48495 * 109.47157 * 329.99641 * 9 7 5 13 13 C 1.46902 * 110.99559 * 62.35369 * 3 2 1 14 14 C 1.52997 * 109.47586 * 66.04360 * 13 3 2 15 15 N 1.46498 * 109.47532 * 180.02562 * 14 13 3 16 16 N 1.40445 * 126.81894 * 269.68707 * 15 14 13 17 17 C 1.30713 * 106.78921 * 179.88561 * 16 15 14 18 18 C 1.50706 * 125.52449 * 180.12858 * 17 16 15 19 19 N 1.33240 * 108.94915 * 0.37782 * 17 16 15 20 20 C 1.30832 * 109.82833 * 359.74815 * 19 17 16 21 21 C 1.50691 * 125.96190 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.46659 * 300.24480 * 1 2 3 23 23 H 1.08996 * 109.47172 * 60.24259 * 1 2 3 24 24 H 1.08999 * 109.46787 * 180.24229 * 1 2 3 25 25 H 1.09006 * 109.46884 * 240.00756 * 2 1 3 26 26 H 1.09000 * 109.47539 * 120.00659 * 2 1 3 27 27 H 1.09003 * 109.46747 * 53.23300 * 4 3 2 28 28 H 1.08997 * 109.47511 * 173.22761 * 4 3 2 29 29 H 0.97002 * 119.99704 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46919 * 186.04487 * 13 3 2 31 31 H 1.09003 * 109.47211 * 306.03884 * 13 3 2 32 32 H 1.09004 * 109.47096 * 300.00019 * 14 13 3 33 33 H 1.08997 * 109.47431 * 59.99954 * 14 13 3 34 34 H 1.08994 * 109.47353 * 270.31293 * 18 17 16 35 35 H 1.08999 * 109.46963 * 30.31237 * 18 17 16 36 36 H 1.09005 * 109.46613 * 150.30920 * 18 17 16 37 37 H 1.09003 * 109.47360 * 270.04402 * 21 20 19 38 38 H 1.08999 * 109.47250 * 30.04718 * 21 20 19 39 39 H 1.09006 * 109.47362 * 150.04658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5804 2.0989 -1.2063 5 6 2.2485 1.4986 -2.4165 6 1 2.9918 0.7248 -2.2947 7 6 1.9106 1.9376 -3.6792 8 7 1.0051 2.8796 -3.8274 9 14 2.7393 1.1941 -5.1791 10 1 1.9564 0.0222 -5.6473 11 1 2.8066 2.2088 -6.2613 12 1 4.1136 0.7603 -4.8213 13 6 1.5951 2.0934 1.2149 14 6 2.2745 1.4671 2.4343 15 7 1.8507 2.1731 3.6459 16 7 2.4725 3.2880 4.2315 17 6 1.7712 3.5989 5.2898 18 6 2.0656 4.7379 6.2318 19 7 0.7570 2.7424 5.4038 20 6 0.7926 1.8791 4.4213 21 6 -0.1819 0.7515 4.1983 22 1 -0.3632 0.5176 0.8878 23 1 -0.3633 0.5100 -0.8921 24 1 -0.3633 -1.0277 0.0043 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.4986 2.0103 -1.3071 28 1 1.8527 3.1511 -1.1253 29 1 0.7671 3.1882 -4.7157 30 1 1.8780 3.1435 1.1408 31 1 0.5132 2.0153 1.3217 32 1 1.9917 0.4170 2.5084 33 1 3.3565 1.5452 2.3276 34 1 2.7259 4.3908 7.0264 35 1 2.5499 5.5464 5.6841 36 1 1.1337 5.1004 6.6659 37 1 0.1722 -0.1418 4.7128 38 1 -1.1592 1.0331 4.5901 39 1 -0.2634 0.5476 3.1306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701664161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:46 Heat of formation + Delta-G solvation = 84.058996 kcal Electronic energy + Delta-G solvation = -18747.573280 eV Core-core repulsion = 15920.063705 eV Total energy + Delta-G solvation = -2827.509576 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05161 -37.77788 -34.58231 -32.79987 -32.54179 -30.41562 -29.58995 -28.83660 -27.34200 -25.61633 -23.74806 -22.55076 -20.64002 -20.42159 -19.29306 -16.76792 -16.32700 -15.84178 -15.48154 -14.80998 -14.45615 -14.35023 -13.84014 -13.56144 -13.31610 -13.02298 -12.86233 -12.77143 -12.55575 -12.35268 -11.99663 -11.81627 -11.68099 -11.33410 -11.08332 -10.84928 -10.76951 -10.61088 -10.15465 -9.97513 -9.86486 -9.58754 -9.34135 -9.12657 -8.49535 -7.38187 -6.08319 -4.10074 1.67690 2.37775 2.92363 3.27811 3.34790 3.38721 4.02843 4.36455 4.47740 4.65424 4.93126 5.00090 5.18166 5.25235 5.27530 5.29181 5.47481 5.48745 5.54942 5.65698 5.70240 5.73164 5.84622 5.92891 6.05887 6.15917 6.25041 6.43969 6.55828 6.57410 6.76346 6.91736 7.19258 7.31859 7.71293 7.97515 8.05856 8.20115 8.42862 8.97484 9.54406 11.02367 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.004465 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.674889 B = 6269.567643 C = 6674.189507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 N -0.530 5.530 4 C 0.190 3.810 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.040 3.960 14 C 0.129 3.871 15 N -0.367 5.367 16 N -0.315 5.315 17 C 0.211 3.789 18 C -0.055 4.055 19 N -0.549 5.549 20 C 0.275 3.725 21 C -0.079 4.079 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.005 0.995 28 H 0.025 0.975 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -3.737 15.746 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.073 4.073 3 N -0.255 5.255 4 C 0.066 3.934 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.090 4.090 14 C 0.007 3.993 15 N -0.157 5.157 16 N -0.144 5.144 17 C -0.071 4.071 18 C -0.114 4.114 19 N -0.278 5.278 20 C -0.001 4.001 21 C -0.138 4.138 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.589 -3.283 15.529 15.883 hybrid contribution -0.594 -0.451 -1.156 1.375 sum -1.183 -3.734 14.373 14.897 Atomic orbital electron populations 1.22412 0.99215 1.01163 1.02144 1.22073 0.92313 0.91350 1.01564 1.62328 1.59212 1.02000 1.01926 1.19803 0.94827 0.93676 0.85130 1.21110 1.22360 1.21247 0.89887 0.91802 1.24984 0.95247 0.95184 0.99128 1.69955 1.31903 1.28835 1.23056 0.86501 0.79936 0.78744 0.82280 1.20731 1.21259 1.19735 1.22350 0.97053 0.99336 0.90260 1.21958 1.02613 0.94661 0.80062 1.50400 1.20699 1.22966 1.21664 1.78045 1.21774 1.02620 1.11971 1.24234 0.90669 0.97661 0.94569 1.20035 1.02960 0.92474 0.95933 1.70310 1.25029 1.07480 1.25028 1.24285 0.90360 0.97266 0.88208 1.20407 0.96747 0.92897 1.03725 0.93875 0.91005 0.93105 0.89566 0.93038 0.97701 0.95677 0.92872 0.90630 0.94797 0.88635 0.87653 0.90191 0.90125 0.89842 0.89223 0.88582 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 9.26 37.16 0.34 -2.71 16 2 C 0.06 0.95 5.67 -3.82 -0.02 0.93 16 3 N -0.53 -10.58 4.70 -236.07 -1.11 -11.69 16 4 C 0.19 4.74 4.52 -4.98 -0.02 4.72 16 5 C -0.51 -13.73 8.40 -34.44 -0.29 -14.01 16 6 H 0.06 1.71 7.35 -52.49 -0.39 1.32 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.04 0.69 5.08 -3.82 -0.02 0.67 16 14 C 0.13 1.85 6.05 -4.04 -0.02 1.83 16 15 N -0.37 -5.63 3.64 -58.35 -0.21 -5.84 16 16 N -0.32 -5.28 12.70 32.42 0.41 -4.87 16 17 C 0.21 3.17 8.14 -156.85 -1.28 1.90 16 18 C -0.05 -0.57 10.51 36.01 0.38 -0.19 16 19 N -0.55 -8.45 11.19 -8.16 -0.09 -8.54 16 20 C 0.27 3.87 7.98 -155.70 -1.24 2.63 16 21 C -0.08 -0.76 10.00 36.00 0.36 -0.39 16 22 H 0.04 0.62 5.73 -51.93 -0.30 0.32 16 23 H 0.07 1.40 6.31 -51.93 -0.33 1.07 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 1.64 6.97 -51.93 -0.36 1.28 16 26 H 0.05 0.72 6.37 -51.93 -0.33 0.39 16 27 H 0.01 0.14 6.02 -51.93 -0.31 -0.17 16 28 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.08 1.47 7.92 -51.93 -0.41 1.05 16 31 H 0.03 0.58 6.07 -51.93 -0.32 0.27 16 32 H 0.10 1.14 6.08 -51.93 -0.32 0.82 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.77 7.18 -51.93 -0.37 0.40 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -31.72 316.66 -8.36 -40.08 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.94 Total: -1.45 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.91 Total: -3.18 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.26 Total: -56.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.72 -8.36 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701664161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.136 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds