Wall clock time and date at job start Mon Mar 30 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.47079 * 2 1 4 4 C 1.46895 * 111.00690 * 298.39587 * 3 2 1 5 5 C 1.50701 * 109.46978 * 293.23479 * 4 3 2 6 6 H 1.07997 * 120.00217 * 354.96672 * 5 4 3 7 7 C 1.37882 * 119.99702 * 174.96912 * 5 4 3 8 8 N 1.31511 * 119.99881 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99653 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47272 * 89.99851 * 9 7 5 11 11 H 1.48497 * 109.46904 * 209.99932 * 9 7 5 12 12 H 1.48495 * 109.47157 * 329.99641 * 9 7 5 13 13 C 1.46902 * 110.99559 * 62.35369 * 3 2 1 14 14 C 1.52997 * 109.47586 * 66.04360 * 13 3 2 15 15 N 1.46498 * 109.47532 * 180.02562 * 14 13 3 16 16 N 1.40445 * 126.81894 * 269.68707 * 15 14 13 17 17 C 1.30713 * 106.78921 * 179.88561 * 16 15 14 18 18 C 1.50706 * 125.52449 * 180.12858 * 17 16 15 19 19 N 1.33240 * 108.94915 * 0.37782 * 17 16 15 20 20 C 1.30832 * 109.82833 * 359.74815 * 19 17 16 21 21 C 1.50691 * 125.96190 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.46659 * 300.24480 * 1 2 3 23 23 H 1.08996 * 109.47172 * 60.24259 * 1 2 3 24 24 H 1.08999 * 109.46787 * 180.24229 * 1 2 3 25 25 H 1.09006 * 109.46884 * 240.00756 * 2 1 3 26 26 H 1.09000 * 109.47539 * 120.00659 * 2 1 3 27 27 H 1.09003 * 109.46747 * 53.23300 * 4 3 2 28 28 H 1.08997 * 109.47511 * 173.22761 * 4 3 2 29 29 H 0.97002 * 119.99704 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46919 * 186.04487 * 13 3 2 31 31 H 1.09003 * 109.47211 * 306.03884 * 13 3 2 32 32 H 1.09004 * 109.47096 * 300.00019 * 14 13 3 33 33 H 1.08997 * 109.47431 * 59.99954 * 14 13 3 34 34 H 1.08994 * 109.47353 * 270.31293 * 18 17 16 35 35 H 1.08999 * 109.46963 * 30.31237 * 18 17 16 36 36 H 1.09005 * 109.46613 * 150.30920 * 18 17 16 37 37 H 1.09003 * 109.47360 * 270.04402 * 21 20 19 38 38 H 1.08999 * 109.47250 * 30.04718 * 21 20 19 39 39 H 1.09006 * 109.47362 * 150.04658 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5804 2.0989 -1.2063 5 6 2.2485 1.4986 -2.4165 6 1 2.9918 0.7248 -2.2947 7 6 1.9106 1.9376 -3.6792 8 7 1.0051 2.8796 -3.8274 9 14 2.7393 1.1941 -5.1791 10 1 1.9564 0.0222 -5.6473 11 1 2.8066 2.2088 -6.2613 12 1 4.1136 0.7603 -4.8213 13 6 1.5951 2.0934 1.2149 14 6 2.2745 1.4671 2.4343 15 7 1.8507 2.1731 3.6459 16 7 2.4725 3.2880 4.2315 17 6 1.7712 3.5989 5.2898 18 6 2.0656 4.7379 6.2318 19 7 0.7570 2.7424 5.4038 20 6 0.7926 1.8791 4.4213 21 6 -0.1819 0.7515 4.1983 22 1 -0.3632 0.5176 0.8878 23 1 -0.3633 0.5100 -0.8921 24 1 -0.3633 -1.0277 0.0043 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.4986 2.0103 -1.3071 28 1 1.8527 3.1511 -1.1253 29 1 0.7671 3.1882 -4.7157 30 1 1.8780 3.1435 1.1408 31 1 0.5132 2.0153 1.3217 32 1 1.9917 0.4170 2.5084 33 1 3.3565 1.5452 2.3276 34 1 2.7259 4.3908 7.0264 35 1 2.5499 5.5464 5.6841 36 1 1.1337 5.1004 6.6659 37 1 0.1722 -0.1418 4.7128 38 1 -1.1592 1.0331 4.5901 39 1 -0.2634 0.5476 3.1306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701664161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:45 Heat of formation + Delta-G solvation = 63.202397 kcal Electronic energy + Delta-G solvation = -18748.477690 eV Core-core repulsion = 15920.063705 eV Total energy + Delta-G solvation = -2828.413986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.14786 -39.31127 -35.83496 -34.65850 -33.70423 -31.59753 -30.97850 -30.01449 -28.70163 -27.13471 -25.23995 -24.18741 -21.72837 -21.58792 -20.76665 -18.39546 -17.96584 -17.11099 -16.85581 -16.51791 -15.98484 -15.47550 -15.03805 -14.88891 -14.37766 -14.25973 -14.06823 -13.93424 -13.66444 -13.47051 -13.22632 -13.12883 -12.99946 -12.79175 -12.63583 -12.60051 -12.38609 -12.26362 -11.90830 -11.42146 -11.35018 -11.03388 -10.71235 -10.61349 -10.31921 -9.03454 -8.20580 -6.30276 0.58008 1.28563 1.41196 1.42749 1.53994 1.84600 2.40132 3.11306 3.12921 3.26570 3.44151 3.79116 3.84080 3.96992 4.21140 4.27158 4.42476 4.49847 4.60125 4.64536 4.65835 4.73114 4.73366 4.86913 4.90912 4.98173 5.00430 5.04041 5.19253 5.34020 5.38177 5.50379 5.53181 5.66059 5.87744 6.03950 6.28474 6.55789 6.86312 7.09840 7.39484 8.90367 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.004465 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.674889 B = 6269.567643 C = 6674.189507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 N -0.537 5.537 4 C 0.206 3.794 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.050 3.950 14 C 0.143 3.857 15 N -0.379 5.379 16 N -0.358 5.358 17 C 0.205 3.795 18 C -0.054 4.054 19 N -0.571 5.571 20 C 0.276 3.724 21 C -0.078 4.078 22 H 0.060 0.940 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.096 0.904 27 H -0.016 1.016 28 H -0.013 1.013 29 H 0.263 0.737 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -5.812 16.861 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.074 4.074 3 N -0.261 5.261 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.084 0.916 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 C -0.080 4.080 14 C 0.021 3.979 15 N -0.170 5.170 16 N -0.187 5.187 17 C -0.077 4.077 18 C -0.113 4.113 19 N -0.301 5.301 20 C 0.001 3.999 21 C -0.137 4.137 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.002 0.998 28 H 0.005 0.995 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.539 -5.374 16.668 17.521 hybrid contribution -0.650 0.213 -1.413 1.570 sum -1.189 -5.161 15.255 16.148 Atomic orbital electron populations 1.22313 0.98211 1.02732 1.00825 1.22185 0.93189 0.89332 1.02727 1.62172 1.59657 1.03248 1.01011 1.19405 0.93331 0.92088 0.87231 1.21429 1.22252 1.21088 0.90866 0.91615 1.25889 0.95803 0.95521 1.02392 1.70091 1.33469 1.30341 1.23791 0.85410 0.79166 0.78021 0.78208 1.19611 1.21191 1.18860 1.22220 0.97566 0.97689 0.90519 1.21814 1.01823 0.95790 0.78502 1.50405 1.21428 1.23144 1.22009 1.77992 1.23483 1.03993 1.13227 1.25053 0.90064 0.98136 0.94453 1.20219 1.04077 0.91324 0.95672 1.70373 1.25477 1.08244 1.25991 1.25188 0.90031 0.97510 0.87206 1.20656 0.96145 0.92225 1.04682 0.92103 0.95347 0.90052 0.91638 0.88567 0.99801 0.99467 0.92811 0.93870 0.94350 0.85190 0.88296 0.88365 0.89575 0.88572 0.86518 0.87538 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.52 9.26 71.98 0.67 -4.85 16 2 C 0.05 1.73 5.67 86.30 0.49 2.22 16 3 N -0.54 -21.45 4.70 -900.78 -4.23 -25.69 16 4 C 0.21 10.67 4.52 85.56 0.39 11.05 16 5 C -0.52 -28.57 8.40 25.60 0.21 -28.35 16 6 H 0.07 3.52 7.35 -2.91 -0.02 3.50 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.94 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.05 1.71 5.08 86.30 0.44 2.15 16 14 C 0.14 3.85 6.05 86.38 0.52 4.38 16 15 N -0.38 -11.19 3.64 -338.51 -1.23 -12.42 16 16 N -0.36 -11.92 12.70 -51.33 -0.65 -12.57 16 17 C 0.20 6.02 8.14 138.63 1.13 7.15 16 18 C -0.05 -1.05 10.51 71.24 0.75 -0.30 16 19 N -0.57 -16.79 11.19 -179.73 -2.01 -18.80 16 20 C 0.28 7.23 7.98 138.22 1.10 8.34 16 21 C -0.08 -1.23 10.00 71.23 0.71 -0.52 16 22 H 0.06 1.60 5.73 -2.39 -0.01 1.59 16 23 H 0.03 1.10 6.31 -2.39 -0.02 1.08 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 2.42 6.97 -2.38 -0.02 2.40 16 26 H 0.10 2.29 6.37 -2.39 -0.02 2.27 16 27 H -0.02 -0.87 6.02 -2.39 -0.01 -0.88 16 28 H -0.01 -0.74 7.92 -2.39 -0.02 -0.76 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.04 1.75 7.92 -2.38 -0.02 1.73 16 31 H 0.04 1.29 6.07 -2.39 -0.01 1.27 16 32 H 0.13 2.58 6.08 -2.38 -0.01 2.57 16 33 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.32 7.18 -2.38 -0.02 1.30 16 Total: -1.00 -71.41 316.66 2.10 -69.32 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.03 Total: 8.45 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.87 Total: 1.82 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -7.84 Total: -125.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.41 2.10 -69.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701664161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.518 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds