Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99894 * 2 1 4 4 C 1.50700 * 109.47276 * 269.99948 * 3 2 1 5 5 H 1.07996 * 119.99825 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99888 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99912 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47079 * 89.99743 * 8 6 4 10 10 H 1.48499 * 109.47246 * 209.99796 * 8 6 4 11 11 H 1.48498 * 109.47048 * 329.99923 * 8 6 4 12 12 C 1.34781 * 119.99921 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99621 * 174.22355 * 12 2 1 14 14 C 1.50699 * 120.00082 * 354.22810 * 12 2 1 15 15 C 1.51570 * 111.11380 * 71.36252 * 14 12 2 16 16 C 1.57054 * 101.48607 * 72.44936 * 15 14 12 17 17 C 1.56008 * 106.03904 * 24.65603 * 16 15 14 18 18 C 1.49717 * 103.99128 * 7.39352 * 17 16 15 19 19 H 1.08998 * 107.87330 * 77.77968 * 18 17 16 20 20 C 1.49730 * 127.97963 * 210.27268 * 18 17 16 21 21 N 1.49698 * 104.64188 * 149.18359 * 20 18 17 22 22 C 1.50037 * 107.72645 * 353.59475 * 21 20 18 23 23 H 1.09002 * 109.46724 * 86.80622 * 1 2 3 24 24 H 1.09003 * 109.46959 * 206.80339 * 1 2 3 25 25 H 1.08994 * 109.47107 * 326.80756 * 1 2 3 26 26 H 1.09001 * 109.47072 * 30.00724 * 3 2 1 27 27 H 1.09007 * 109.47010 * 149.99703 * 3 2 1 28 28 H 0.96999 * 120.00014 * 179.97438 * 7 6 4 29 29 H 1.08998 * 110.95517 * 189.62564 * 15 14 12 30 30 H 1.08996 * 110.95827 * 313.35349 * 15 14 12 31 31 H 1.08997 * 109.67802 * 265.69787 * 16 15 14 32 32 H 1.09003 * 110.44343 * 144.01806 * 16 15 14 33 33 H 1.09000 * 110.51965 * 248.76457 * 17 16 15 34 34 H 1.09004 * 110.51970 * 126.02226 * 17 16 15 35 35 H 1.08998 * 110.40355 * 30.39047 * 20 18 17 36 36 H 1.08993 * 110.40304 * 267.96900 * 20 18 17 37 37 H 1.00892 * 111.00351 * 115.31221 * 21 20 18 38 38 H 1.08995 * 110.80680 * 216.13522 * 22 21 20 39 39 H 1.09006 * 110.80236 * 92.62127 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4389 3.4164 -3.4338 9 1 2.3093 4.2596 -3.9010 10 1 4.6995 4.1989 -3.4961 11 1 3.5560 2.2192 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3471 -1.1699 -0.1052 14 6 1.3912 -2.4690 0.1324 15 6 0.6132 -2.7820 -1.1302 16 6 1.7679 -3.1747 -2.1197 17 6 2.9522 -3.6618 -1.2286 18 6 2.3732 -3.7041 0.1514 19 1 1.7670 -4.6063 0.2324 20 6 3.0791 -3.4864 1.4538 21 7 2.0402 -2.8914 2.3525 22 6 0.8162 -2.6296 1.5251 23 1 -0.3633 0.0573 -1.0261 24 1 -0.3633 -0.9173 0.4634 25 1 -0.3633 0.8599 0.5626 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1384 0.5139 28 1 4.0317 4.4432 -0.8503 29 1 -0.0563 -3.6282 -0.9758 30 1 0.0611 -1.9077 -1.4749 31 1 2.0675 -2.3015 -2.6992 32 1 1.4436 -3.9752 -2.7848 33 1 3.7805 -2.9548 -1.2742 34 1 3.2788 -4.6551 -1.5367 35 1 3.9110 -2.7941 1.3241 36 1 3.4325 -4.4351 1.8577 37 1 1.8310 -3.5093 3.1221 38 1 0.3197 -1.7143 1.8471 39 1 0.1325 -3.4775 1.5664 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702095524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -10.706155 kcal Electronic energy + Delta-G solvation = -20198.885588 eV Core-core repulsion = 17334.973936 eV Total energy + Delta-G solvation = -2863.911652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14853 -37.32069 -34.77982 -34.59659 -32.60638 -30.40028 -28.05404 -27.42455 -26.03528 -25.75910 -23.32070 -21.71263 -20.91105 -19.65474 -17.90975 -16.46687 -16.22520 -15.95114 -15.33152 -14.88076 -14.59189 -14.42539 -13.66214 -13.30807 -13.18031 -12.79379 -12.48066 -12.19224 -12.01329 -11.93335 -11.72068 -11.38124 -11.20764 -11.13795 -10.92654 -10.84030 -10.55149 -10.50388 -10.20331 -10.03178 -9.93401 -9.54659 -8.57052 -8.37660 -8.33143 -7.50013 -5.97930 -4.02008 3.32983 3.39471 3.43607 3.59050 3.89655 4.19659 4.27715 4.49505 4.77484 4.99654 5.09978 5.22577 5.31333 5.36007 5.45045 5.59015 5.62895 5.66134 5.72569 5.83157 5.89095 5.99884 6.01133 6.04460 6.23544 6.24899 6.29325 6.43144 6.50994 6.74969 6.78069 7.16560 7.43305 7.53293 7.66854 7.99016 8.31376 8.56583 8.98445 9.26144 9.62767 11.10007 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.007146 C = 0.006745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.011056 B = 3917.267627 C = 4149.951313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.600 5.600 3 C 0.249 3.751 4 C -0.520 4.520 5 H 0.055 0.945 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.541 3.459 13 O -0.531 6.531 14 C -0.112 4.112 15 C -0.103 4.103 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.099 4.099 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.676 5.676 22 C 0.061 3.939 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.332 0.668 38 H 0.088 0.912 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 -14.920 2.280 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.130 3.870 4 C -0.559 4.559 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.327 3.673 13 O -0.408 6.408 14 C -0.116 4.116 15 C -0.141 4.141 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.119 4.119 19 H 0.076 0.924 20 C -0.072 4.072 21 N -0.304 5.304 22 C -0.067 4.067 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.908 -14.041 2.278 15.814 hybrid contribution -0.387 -0.516 -1.102 1.277 sum -7.295 -14.557 1.176 16.325 Atomic orbital electron populations 1.21763 0.82036 1.01469 1.00982 1.47992 1.05782 1.07655 1.71797 1.19242 0.92408 0.78091 0.97260 1.21424 1.36071 1.06031 0.92395 0.92634 1.24932 0.95521 0.96491 0.97254 1.69936 1.38605 1.14354 1.30612 0.86530 0.77627 0.78545 0.84908 1.20728 1.21130 1.19963 1.19412 0.87445 0.83808 0.76672 1.90580 1.14157 1.86519 1.49525 1.22082 0.98504 0.95659 0.95380 1.22124 0.97065 1.01430 0.93522 1.23058 0.94283 1.00924 0.97634 1.21443 0.99370 1.01213 0.92565 1.21802 0.97991 0.96157 0.95951 0.92414 1.21938 0.96230 0.98493 0.90490 1.63406 1.07894 1.48766 1.10335 1.22433 0.92102 1.01087 0.91115 0.93394 0.92173 0.91803 0.95251 0.94039 0.92818 0.91176 0.90334 0.91152 0.91922 0.89011 0.92410 0.88378 0.93046 0.85337 0.89414 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 8.79 59.85 0.53 1.88 16 2 N -0.60 -13.10 2.86 -182.95 -0.52 -13.63 16 3 C 0.25 6.71 5.16 -5.19 -0.03 6.68 16 4 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.54 11.39 5.28 -10.98 -0.06 11.33 16 13 O -0.53 -13.26 12.33 5.56 0.07 -13.19 16 14 C -0.11 -1.74 0.19 -154.50 -0.03 -1.77 16 15 C -0.10 -1.40 5.78 -25.26 -0.15 -1.54 16 16 C -0.12 -1.74 6.55 -22.92 -0.15 -1.89 16 17 C -0.11 -1.62 6.16 -26.75 -0.16 -1.79 16 18 C -0.10 -1.43 2.23 -91.23 -0.20 -1.63 16 19 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 20 C 0.06 0.85 6.89 -3.88 -0.03 0.82 16 21 N -0.68 -9.74 7.38 -111.72 -0.82 -10.57 16 22 C 0.06 0.83 6.17 -2.81 -0.02 0.81 16 23 H 0.05 0.77 7.53 -51.93 -0.39 0.38 16 24 H 0.06 0.81 4.40 -51.93 -0.23 0.58 16 25 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 26 H 0.03 0.80 7.92 -51.93 -0.41 0.39 16 27 H 0.04 1.26 7.51 -51.92 -0.39 0.87 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.09 5.97 -51.93 -0.31 0.78 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.70 6.48 -51.93 -0.34 1.36 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.83 6.66 -51.93 -0.35 1.48 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.33 3.77 8.94 -39.30 -0.35 3.42 16 38 H 0.09 1.23 6.21 -51.93 -0.32 0.90 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -33.03 297.29 -7.80 -40.82 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.00 Total: 2.10 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -0.72 Total: -0.84 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.61 Total: -50.60 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.03 -7.80 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702095524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.118 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds