Wall clock time and date at job start Mon Mar 30 2020 03:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00017 * 2 1 4 4 C 1.50696 * 109.46860 * 270.00190 * 3 2 1 5 5 H 1.08001 * 120.00774 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00139 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00160 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47360 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47198 * 120.00079 * 8 6 4 11 11 H 1.48494 * 109.47510 * 240.00497 * 8 6 4 12 12 C 1.34781 * 120.00082 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99523 * 184.87636 * 12 2 1 14 14 C 1.50695 * 119.99677 * 4.87853 * 12 2 1 15 15 C 1.49721 * 108.54763 * 292.13323 * 14 12 2 16 16 C 1.55999 * 103.99270 * 283.14200 * 15 14 12 17 17 C 1.56331 * 105.77859 * 353.06815 * 16 15 14 18 18 C 1.51573 * 101.81864 * 334.56920 * 17 16 15 19 19 H 1.09000 * 111.53373 * 288.34232 * 18 17 16 20 20 C 1.51537 * 123.29061 * 152.07943 * 18 17 16 21 21 N 1.50038 * 102.45874 * 208.26808 * 20 18 17 22 22 C 1.49697 * 107.72732 * 25.62939 * 21 20 18 23 23 H 1.09003 * 109.46902 * 274.92517 * 1 2 3 24 24 H 1.08997 * 109.47486 * 34.93237 * 1 2 3 25 25 H 1.08997 * 109.47175 * 154.93340 * 1 2 3 26 26 H 1.08998 * 109.46962 * 29.99666 * 3 2 1 27 27 H 1.08996 * 109.47125 * 149.99790 * 3 2 1 28 28 H 0.96992 * 120.00406 * 179.97438 * 7 6 4 29 29 H 1.09003 * 110.51889 * 164.51544 * 15 14 12 30 30 H 1.08992 * 110.52067 * 41.77129 * 15 14 12 31 31 H 1.08997 * 110.18458 * 112.14739 * 16 15 14 32 32 H 1.09004 * 110.18594 * 233.98947 * 16 15 14 33 33 H 1.08997 * 110.95933 * 92.70227 * 17 16 15 34 34 H 1.08997 * 110.96129 * 216.44106 * 17 16 15 35 35 H 1.09004 * 110.80792 * 90.03367 * 20 18 17 36 36 H 1.08991 * 110.97739 * 326.58922 * 20 18 17 37 37 H 1.00901 * 110.99802 * 147.33833 * 21 20 18 38 38 H 1.08997 * 110.40225 * 247.61382 * 22 21 20 39 39 H 1.08998 * 110.50424 * 125.24117 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6733 8 14 3.4378 3.4168 -3.4339 9 1 2.8607 2.4164 -4.3674 10 1 2.7997 4.7372 -3.6680 11 1 4.9004 3.5256 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3484 -1.1690 0.0898 14 6 1.3895 -2.4699 -0.1099 15 6 0.5935 -2.6691 1.1425 16 6 1.6515 -3.1281 2.1929 17 6 2.9812 -3.3312 1.3962 18 6 2.4658 -3.6189 0.0001 19 1 2.0073 -4.6059 -0.0615 20 6 3.2490 -3.3012 -1.2576 21 7 2.1623 -3.0746 -2.2670 22 6 0.9361 -2.6396 -1.5268 23 1 -0.3633 0.0882 1.0239 24 1 -0.3634 0.8425 -0.5884 25 1 -0.3633 -0.9308 -0.4354 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0301 4.4439 -0.8505 29 1 -0.1609 -3.4423 0.9968 30 1 0.1283 -1.7334 1.4524 31 1 1.7830 -2.3598 2.9548 32 1 1.3419 -4.0663 2.6534 33 1 3.5859 -2.4244 1.4094 34 1 3.5440 -4.1791 1.7864 35 1 3.8762 -4.1445 -1.5466 36 1 3.8495 -2.4011 -1.1264 37 1 2.4390 -2.3821 -2.9468 38 1 0.1629 -3.4054 -1.5892 39 1 0.5661 -1.6940 -1.9232 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702095533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:57 Heat of formation + Delta-G solvation = -19.705915 kcal Electronic energy + Delta-G solvation = -20355.983007 eV Core-core repulsion = 17491.681096 eV Total energy + Delta-G solvation = -2864.301911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.92383 -38.69052 -36.74871 -35.75810 -34.81709 -31.67424 -29.64062 -28.91611 -27.44525 -27.07712 -25.29232 -22.89444 -22.22082 -20.94744 -19.57773 -18.73022 -17.64124 -17.21097 -17.06031 -16.51857 -16.25491 -15.82718 -15.10854 -15.05110 -14.30991 -14.20985 -14.08139 -13.79054 -13.53603 -13.35601 -13.14322 -12.91979 -12.76366 -12.62224 -12.55277 -12.32380 -12.24173 -11.98622 -11.76088 -11.70800 -11.17943 -11.08072 -10.68928 -10.11372 -9.52561 -9.28828 -8.26052 -6.41515 1.33419 1.35409 1.47003 1.81192 2.26637 2.40964 2.94205 3.03340 3.17720 3.49917 3.91516 3.98971 4.16745 4.26430 4.33886 4.41859 4.50131 4.61959 4.68173 4.72757 4.78681 4.84878 4.91223 4.93640 5.02464 5.06598 5.09130 5.17390 5.19030 5.28473 5.36694 5.50747 5.61439 5.70371 5.84310 6.01888 6.21713 6.66342 6.78467 7.25323 7.49231 8.80825 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.007436 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.679082 B = 3764.313842 C = 4029.641730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.261 3.739 4 C -0.539 4.539 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.504 3.496 13 O -0.573 6.573 14 C -0.112 4.112 15 C -0.100 4.100 16 C -0.118 4.118 17 C -0.135 4.135 18 C -0.077 4.077 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.679 5.679 22 C 0.068 3.932 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.018 0.982 27 H -0.003 1.003 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.331 0.669 38 H 0.114 0.886 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 -14.290 2.125 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.337 5.337 3 C 0.139 3.861 4 C -0.577 4.577 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.294 3.706 13 O -0.455 6.455 14 C -0.116 4.116 15 C -0.138 4.138 16 C -0.155 4.155 17 C -0.173 4.173 18 C -0.096 4.096 19 H 0.125 0.875 20 C -0.103 4.103 21 N -0.306 5.306 22 C -0.061 4.061 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.871 -14.786 2.129 17.374 hybrid contribution 0.983 1.986 -0.491 2.269 sum -7.889 -12.800 1.638 15.124 Atomic orbital electron populations 1.22056 0.78563 1.03832 1.02312 1.48106 1.08016 1.06333 1.71219 1.18709 0.90971 0.80394 0.95996 1.21671 1.36740 1.06497 0.92840 0.92932 1.25854 0.94937 0.96448 1.01872 1.70055 1.38896 1.14809 1.32993 0.85381 0.77842 0.78482 0.79204 1.18964 1.19483 1.20838 1.21200 0.87662 0.86165 0.75602 1.90444 1.16502 1.87196 1.51338 1.21816 0.99482 0.92214 0.98113 1.21642 0.97837 1.03456 0.90861 1.22957 0.93367 1.01940 0.97282 1.22351 0.98336 1.02490 0.94075 1.22361 0.95494 0.97678 0.94066 0.87503 1.22835 0.94355 1.01694 0.91377 1.63545 1.04247 1.47841 1.14975 1.21954 0.94273 1.00897 0.88988 0.91272 0.91828 0.88661 0.96365 0.98486 0.92415 0.87030 0.90644 0.93117 0.88624 0.91647 0.90695 0.90306 0.92460 0.85529 0.86765 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.26 8.54 127.77 1.09 3.35 16 2 N -0.61 -25.51 2.85 -851.16 -2.42 -27.94 16 3 C 0.26 14.10 5.22 85.63 0.45 14.55 16 4 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.46 5.46 84.66 0.46 0.92 16 7 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 8 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.50 20.34 4.86 87.65 0.43 20.77 16 13 O -0.57 -28.18 10.20 -3.02 -0.03 -28.21 16 14 C -0.11 -3.19 0.48 -53.32 -0.03 -3.21 16 15 C -0.10 -2.19 5.57 30.58 0.17 -2.02 16 16 C -0.12 -2.74 6.76 32.79 0.22 -2.52 16 17 C -0.13 -3.92 6.20 31.29 0.19 -3.72 16 18 C -0.08 -2.16 2.98 -10.03 -0.03 -2.19 16 19 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 20 C 0.03 0.84 6.88 85.21 0.59 1.43 16 21 N -0.68 -20.74 7.54 -507.35 -3.82 -24.57 16 22 C 0.07 1.81 6.14 84.71 0.52 2.33 16 23 H 0.07 1.78 7.37 -2.39 -0.02 1.77 16 24 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 25 H 0.09 2.27 4.72 -2.39 -0.01 2.26 16 26 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 27 H 0.00 -0.19 7.36 -2.39 -0.02 -0.20 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.69 5.33 -2.39 -0.01 1.68 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.07 2.54 5.24 -2.39 -0.01 2.53 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 2.42 5.15 -2.84 -0.01 2.41 16 37 H 0.33 10.91 8.94 -89.69 -0.80 10.10 16 38 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.06 1.64 6.58 -2.39 -0.02 1.62 16 Total: -1.00 -70.01 293.19 0.59 -69.42 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.25 Total: 21.31 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.30 Total: -0.95 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -5.96 Total: -108.47 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.03 Total: -28.21 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.01 0.59 -69.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702095533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.716 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds