Wall clock time and date at job start Mon Mar 30 2020 03:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00133 * 2 1 4 4 C 1.50707 * 109.47407 * 270.00026 * 3 2 1 5 5 H 1.07998 * 120.00036 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00056 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99824 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99793 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46808 * 90.00594 * 8 6 4 10 10 H 1.48501 * 109.47066 * 210.00465 * 8 6 4 11 11 H 1.48496 * 109.47479 * 330.00251 * 8 6 4 12 12 C 1.34777 * 119.99504 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99696 * 184.47134 * 12 2 1 14 14 C 1.50698 * 120.00319 * 4.46681 * 12 2 1 15 15 C 1.54166 * 111.79527 * 63.15296 * 14 12 2 16 16 C 1.53974 * 104.74253 * 99.96233 * 15 14 12 17 17 C 1.54845 * 103.14383 * 37.01855 * 16 15 14 18 18 C 1.54159 * 104.32599 * 322.50759 * 17 16 15 19 19 H 1.09008 * 111.78928 * 261.29286 * 18 17 16 20 20 C 1.54312 * 108.86916 * 136.32356 * 18 17 16 21 21 N 1.48528 * 104.67181 * 222.50531 * 20 18 17 22 22 C 1.48533 * 104.21152 * 39.64449 * 21 20 18 23 23 H 1.09005 * 109.47326 * 273.42766 * 1 2 3 24 24 H 1.09005 * 109.47266 * 33.42747 * 1 2 3 25 25 H 1.08996 * 109.47884 * 153.42682 * 1 2 3 26 26 H 1.09005 * 109.47419 * 30.00475 * 3 2 1 27 27 H 1.08998 * 109.46991 * 150.00200 * 3 2 1 28 28 H 0.97008 * 119.99679 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.46148 * 217.41812 * 15 14 12 30 30 H 1.09009 * 110.45829 * 339.99134 * 15 14 12 31 31 H 1.09003 * 109.97333 * 278.85102 * 16 15 14 32 32 H 1.09000 * 111.30767 * 155.82467 * 16 15 14 33 33 H 1.09000 * 110.46387 * 203.79071 * 17 16 15 34 34 H 1.08999 * 110.56570 * 81.27089 * 17 16 15 35 35 H 1.08998 * 110.39742 * 341.30662 * 20 18 17 36 36 H 1.09003 * 110.39814 * 103.70601 * 20 18 17 37 37 H 1.00903 * 111.00266 * 280.08680 * 21 20 18 38 38 H 1.08998 * 110.39201 * 201.55597 * 22 21 20 39 39 H 1.08998 * 110.39738 * 79.15442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0975 1.0962 -2.2418 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.3065 4.2603 -3.9000 10 1 4.6969 4.2007 -3.4966 11 1 3.5540 2.2207 -4.3050 12 6 2.1388 -1.1673 -0.0005 13 8 3.3489 -1.1689 0.0814 14 6 1.3887 -2.4703 -0.1027 15 6 0.6309 -2.5912 -1.4399 16 6 1.5270 -3.4830 -2.3188 17 6 2.0987 -4.5100 -1.3108 18 6 2.3389 -3.6913 -0.0269 19 1 3.3817 -3.3893 0.0713 20 6 1.8423 -4.5069 1.1853 21 7 1.1325 -3.5193 2.0379 22 6 0.4042 -2.6591 1.0705 23 1 -0.3634 0.0614 1.0259 24 1 -0.3634 0.8577 -0.5661 25 1 -0.3635 -0.9190 -0.4597 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1383 0.5138 28 1 4.0302 4.4439 -0.8503 29 1 -0.3293 -3.0847 -1.2904 30 1 0.4892 -1.6075 -1.8878 31 1 2.3269 -2.8878 -2.7594 32 1 0.9480 -3.9840 -3.0946 33 1 3.0369 -4.9244 -1.6797 34 1 1.3781 -5.3066 -1.1256 35 1 1.1575 -5.2905 0.8611 36 1 2.6859 -4.9376 1.7247 37 1 1.7855 -2.9772 2.5836 38 1 0.1640 -1.6973 1.5234 39 1 -0.5035 -3.1563 0.7285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702095537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:00 Heat of formation + Delta-G solvation = -32.853709 kcal Electronic energy + Delta-G solvation = -19936.929405 eV Core-core repulsion = 17072.057363 eV Total energy + Delta-G solvation = -2864.872042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78264 -37.70632 -34.95415 -34.52210 -32.73141 -30.71183 -28.26206 -27.41378 -25.90358 -25.58374 -23.26605 -22.05561 -20.76454 -19.79147 -18.06234 -16.67132 -16.54563 -15.77232 -15.40030 -15.12442 -14.75619 -14.31435 -14.15777 -13.71982 -12.92500 -12.55908 -12.53726 -12.28384 -12.18439 -12.02876 -11.68630 -11.27000 -11.20959 -10.99027 -10.91900 -10.80946 -10.67927 -10.55302 -10.49802 -10.37868 -10.17284 -9.64949 -8.96499 -8.54474 -8.46105 -7.66053 -6.06829 -4.11932 3.27590 3.32201 3.35079 3.40235 3.90116 4.28474 4.39645 4.42324 4.70770 4.91153 5.16486 5.17847 5.27556 5.35019 5.37580 5.45065 5.50210 5.65273 5.68264 5.81901 5.85147 5.88162 5.93007 6.01280 6.05725 6.09846 6.18219 6.25292 6.35930 6.50948 6.66762 7.04952 7.30633 7.42422 7.52083 7.89658 8.20652 8.40423 8.87172 9.07136 9.53370 11.01224 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.006624 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.877705 B = 4225.820073 C = 4548.390355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.522 3.478 13 O -0.541 6.541 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.114 4.114 19 H 0.102 0.898 20 C 0.046 3.954 21 N -0.670 5.670 22 C 0.049 3.951 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.339 0.661 38 H 0.082 0.918 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.139 -14.224 0.904 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.308 3.692 13 O -0.419 6.419 14 C -0.121 4.121 15 C -0.147 4.147 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.134 4.134 19 H 0.120 0.880 20 C -0.083 4.083 21 N -0.295 5.295 22 C -0.081 4.081 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.984 -14.451 1.264 16.558 hybrid contribution 0.880 1.113 -1.494 2.060 sum -7.104 -13.338 -0.229 15.114 Atomic orbital electron populations 1.21949 0.81721 1.02945 1.00590 1.48051 1.06064 1.07658 1.71213 1.19289 0.92571 0.78077 0.97490 1.21425 1.36604 1.06312 0.92255 0.92521 1.24938 0.95336 0.96384 0.97434 1.69936 1.38331 1.14312 1.30727 0.86502 0.77733 0.78602 0.84632 1.20582 1.21038 1.19929 1.19903 0.87626 0.84550 0.77098 1.90630 1.14124 1.86886 1.50274 1.22676 0.96753 0.94493 0.98150 1.22330 0.97948 1.00785 0.93613 1.22368 0.99357 0.97042 0.97472 1.22389 1.00625 0.97266 0.94724 1.23095 1.01036 0.93229 0.96070 0.88012 1.23168 0.97309 0.95457 0.92411 1.63296 1.28670 1.16274 1.21269 1.23357 0.96381 0.97719 0.90679 0.93626 0.90989 0.91335 0.95034 0.93839 0.92687 0.90988 0.90334 0.91312 0.91490 0.91733 0.91523 0.90242 0.91058 0.84552 0.90005 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 8.45 59.85 0.51 1.65 16 2 N -0.60 -12.67 2.82 -182.95 -0.52 -13.19 16 3 C 0.24 6.45 5.21 -5.19 -0.03 6.42 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 10.88 6.50 -10.99 -0.07 10.81 16 13 O -0.54 -13.70 15.04 5.55 0.08 -13.62 16 14 C -0.12 -1.76 0.54 -153.36 -0.08 -1.84 16 15 C -0.11 -1.46 4.49 -25.61 -0.11 -1.58 16 16 C -0.12 -1.62 6.86 -25.25 -0.17 -1.79 16 17 C -0.11 -1.34 6.38 -25.15 -0.16 -1.50 16 18 C -0.11 -1.62 3.48 -88.32 -0.31 -1.93 16 19 H 0.10 1.75 6.77 -51.92 -0.35 1.40 16 20 C 0.05 0.55 7.00 -2.24 -0.02 0.54 16 21 N -0.67 -8.70 7.62 -109.78 -0.84 -9.53 16 22 C 0.05 0.63 5.53 -2.23 -0.01 0.62 16 23 H 0.05 0.64 7.21 -51.93 -0.37 0.26 16 24 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 25 H 0.07 0.91 3.96 -51.93 -0.21 0.70 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.30 7.37 -51.93 -0.38 0.91 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.07 0.78 7.25 -51.93 -0.38 0.41 16 30 H 0.08 1.19 6.47 -51.92 -0.34 0.85 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 35 H 0.08 0.85 7.18 -51.93 -0.37 0.48 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.34 4.61 8.92 -39.29 -0.35 4.26 16 38 H 0.08 1.10 5.47 -51.93 -0.28 0.82 16 39 H 0.09 0.97 7.25 -51.93 -0.38 0.59 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -32.30 298.82 -7.79 -40.09 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.86 Total: 3.09 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.88 Total: -2.27 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.62 Total: -48.68 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.30 -7.79 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702095537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.236 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds