Wall clock time and date at job start Mon Mar 30 2020 03:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00133 * 2 1 4 4 C 1.50707 * 109.47407 * 270.00026 * 3 2 1 5 5 H 1.07998 * 120.00036 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00056 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99824 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99793 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46808 * 90.00594 * 8 6 4 10 10 H 1.48501 * 109.47066 * 210.00465 * 8 6 4 11 11 H 1.48496 * 109.47479 * 330.00251 * 8 6 4 12 12 C 1.34777 * 119.99504 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99696 * 184.47134 * 12 2 1 14 14 C 1.50698 * 120.00319 * 4.46681 * 12 2 1 15 15 C 1.54166 * 111.79527 * 63.15296 * 14 12 2 16 16 C 1.53974 * 104.74253 * 99.96233 * 15 14 12 17 17 C 1.54845 * 103.14383 * 37.01855 * 16 15 14 18 18 C 1.54159 * 104.32599 * 322.50759 * 17 16 15 19 19 H 1.09008 * 111.78928 * 261.29286 * 18 17 16 20 20 C 1.54312 * 108.86916 * 136.32356 * 18 17 16 21 21 N 1.48528 * 104.67181 * 222.50531 * 20 18 17 22 22 C 1.48533 * 104.21152 * 39.64449 * 21 20 18 23 23 H 1.09005 * 109.47326 * 273.42766 * 1 2 3 24 24 H 1.09005 * 109.47266 * 33.42747 * 1 2 3 25 25 H 1.08996 * 109.47884 * 153.42682 * 1 2 3 26 26 H 1.09005 * 109.47419 * 30.00475 * 3 2 1 27 27 H 1.08998 * 109.46991 * 150.00200 * 3 2 1 28 28 H 0.97008 * 119.99679 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.46148 * 217.41812 * 15 14 12 30 30 H 1.09009 * 110.45829 * 339.99134 * 15 14 12 31 31 H 1.09003 * 109.97333 * 278.85102 * 16 15 14 32 32 H 1.09000 * 111.30767 * 155.82467 * 16 15 14 33 33 H 1.09000 * 110.46387 * 203.79071 * 17 16 15 34 34 H 1.08999 * 110.56570 * 81.27089 * 17 16 15 35 35 H 1.08998 * 110.39742 * 341.30662 * 20 18 17 36 36 H 1.09003 * 110.39814 * 103.70601 * 20 18 17 37 37 H 1.00903 * 111.00266 * 280.08680 * 21 20 18 38 38 H 1.08998 * 110.39201 * 201.55597 * 22 21 20 39 39 H 1.08998 * 110.39738 * 79.15442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0975 1.0962 -2.2418 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.3065 4.2603 -3.9000 10 1 4.6969 4.2007 -3.4966 11 1 3.5540 2.2207 -4.3050 12 6 2.1388 -1.1673 -0.0005 13 8 3.3489 -1.1689 0.0814 14 6 1.3887 -2.4703 -0.1027 15 6 0.6309 -2.5912 -1.4399 16 6 1.5270 -3.4830 -2.3188 17 6 2.0987 -4.5100 -1.3108 18 6 2.3389 -3.6913 -0.0269 19 1 3.3817 -3.3893 0.0713 20 6 1.8423 -4.5069 1.1853 21 7 1.1325 -3.5193 2.0379 22 6 0.4042 -2.6591 1.0705 23 1 -0.3634 0.0614 1.0259 24 1 -0.3634 0.8577 -0.5661 25 1 -0.3635 -0.9190 -0.4597 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1383 0.5138 28 1 4.0302 4.4439 -0.8503 29 1 -0.3293 -3.0847 -1.2904 30 1 0.4892 -1.6075 -1.8878 31 1 2.3269 -2.8878 -2.7594 32 1 0.9480 -3.9840 -3.0946 33 1 3.0369 -4.9244 -1.6797 34 1 1.3781 -5.3066 -1.1256 35 1 1.1575 -5.2905 0.8611 36 1 2.6859 -4.9376 1.7247 37 1 1.7855 -2.9772 2.5836 38 1 0.1640 -1.6973 1.5234 39 1 -0.5035 -3.1563 0.7285 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702095537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:59 Heat of formation + Delta-G solvation = -56.779593 kcal Electronic energy + Delta-G solvation = -19937.966909 eV Core-core repulsion = 17072.057363 eV Total energy + Delta-G solvation = -2865.909547 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07219 -39.21910 -36.74234 -35.52589 -34.83841 -32.01624 -29.72665 -28.94967 -27.47771 -26.57279 -25.21711 -23.22263 -21.83646 -21.19069 -19.40686 -18.73434 -17.95478 -17.33184 -16.87308 -16.57819 -16.09662 -15.83121 -15.50974 -15.02754 -14.48530 -14.25365 -13.88214 -13.61596 -13.43533 -13.40720 -13.12401 -12.92156 -12.73469 -12.58633 -12.42528 -12.27150 -11.99078 -11.94056 -11.80803 -11.67983 -11.53379 -11.40688 -10.69065 -10.55698 -9.67125 -9.45578 -8.27362 -6.42998 1.32313 1.35527 1.45642 1.75016 2.26318 2.40056 3.01902 3.23218 3.27784 3.53896 3.83242 3.99435 4.15900 4.29261 4.35983 4.36854 4.43529 4.48763 4.62003 4.63840 4.81745 4.89124 4.90394 4.93454 4.96330 5.01381 5.06005 5.12853 5.17237 5.21458 5.29804 5.45565 5.51291 5.67082 5.80186 6.00430 6.22160 6.64438 6.74467 7.22786 7.42897 8.79873 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.006624 C = 0.006155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.877705 B = 4225.820073 C = 4548.390355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.511 3.489 13 O -0.601 6.601 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.104 4.104 18 C -0.120 4.120 19 H 0.058 0.942 20 C 0.053 3.947 21 N -0.670 5.670 22 C 0.054 3.946 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.023 0.977 27 H -0.006 1.006 28 H 0.268 0.732 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.330 0.670 38 H 0.076 0.924 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -16.280 -0.243 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.300 3.700 13 O -0.483 6.483 14 C -0.115 4.115 15 C -0.145 4.145 16 C -0.164 4.164 17 C -0.141 4.141 18 C -0.141 4.141 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.294 5.294 22 C -0.076 4.076 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.120 0.880 26 H 0.041 0.959 27 H 0.013 0.987 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.672 -16.524 0.123 19.671 hybrid contribution 1.741 1.760 -1.082 2.702 sum -8.930 -14.763 -0.959 17.281 Atomic orbital electron populations 1.22239 0.78221 1.04446 1.02482 1.48054 1.08229 1.06172 1.71044 1.18738 0.90969 0.80414 0.96078 1.21678 1.37082 1.06652 0.92884 0.92952 1.25887 0.94786 0.96360 1.02136 1.70058 1.38816 1.14785 1.33118 0.85401 0.78251 0.78230 0.78865 1.18485 1.20513 1.19863 1.21039 0.87352 0.86247 0.75338 1.90594 1.17058 1.87949 1.52715 1.22689 0.97214 0.90961 1.00657 1.22404 0.99675 1.00396 0.92048 1.22395 0.98598 0.97025 0.98389 1.22394 1.01597 0.97336 0.92798 1.23082 0.98510 0.93626 0.98835 0.92333 1.23233 0.98026 0.95255 0.91083 1.63376 1.28559 1.16235 1.21200 1.23464 0.96667 0.98069 0.89425 0.91181 0.91615 0.87986 0.95918 0.98745 0.92315 0.86583 0.92328 0.95150 0.88377 0.91828 0.87988 0.87411 0.90620 0.85540 0.90603 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 8.45 127.77 1.08 3.17 16 2 N -0.60 -26.41 2.82 -851.12 -2.40 -28.81 16 3 C 0.26 14.46 5.21 85.64 0.45 14.90 16 4 C -0.54 -32.11 9.39 25.60 0.24 -31.87 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 8 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.51 22.09 6.50 87.66 0.57 22.66 16 13 O -0.60 -32.70 15.04 -3.05 -0.05 -32.75 16 14 C -0.11 -3.21 0.54 -51.44 -0.03 -3.24 16 15 C -0.11 -2.58 4.49 31.32 0.14 -2.44 16 16 C -0.13 -2.99 6.86 31.55 0.22 -2.78 16 17 C -0.10 -2.19 6.38 31.62 0.20 -1.99 16 18 C -0.12 -3.29 3.48 -9.31 -0.03 -3.32 16 19 H 0.06 2.13 6.77 -2.38 -0.02 2.11 16 20 C 0.05 1.13 7.00 86.43 0.61 1.74 16 21 N -0.67 -15.77 7.62 -501.24 -3.82 -19.60 16 22 C 0.05 1.23 5.53 86.43 0.48 1.71 16 23 H 0.07 1.82 7.21 -2.38 -0.02 1.81 16 24 H 0.07 2.11 8.10 -2.38 -0.02 2.09 16 25 H 0.10 2.43 3.96 -2.39 -0.01 2.42 16 26 H 0.02 1.28 8.07 -2.38 -0.02 1.26 16 27 H -0.01 -0.36 7.37 -2.39 -0.02 -0.38 16 28 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.12 1.82 7.25 -2.39 -0.02 1.80 16 30 H 0.06 1.66 6.47 -2.38 -0.02 1.65 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.49 7.18 -2.39 -0.02 1.48 16 35 H 0.11 1.74 7.18 -2.39 -0.02 1.72 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.33 8.77 8.92 -89.69 -0.80 7.97 16 38 H 0.08 1.84 5.47 -2.39 -0.01 1.83 16 39 H 0.12 2.01 7.25 -2.39 -0.02 1.99 16 Total: -1.00 -75.67 298.82 0.68 -74.99 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.25 Total: 16.06 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 4.38 Total: -0.58 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.93 Total: -105.25 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.67 0.68 -74.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702095537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.215 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds