Wall clock time and date at job start Mon Mar 30 2020 04:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99517 * 2 1 4 4 H 1.48503 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47111 * 300.00044 * 3 2 1 6 6 H 1.48504 * 109.47116 * 60.00077 * 3 2 1 7 7 C 1.37875 * 120.00659 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46860 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46858 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47176 * 180.02562 * 11 10 9 13 13 C 1.46842 * 111.00341 * 65.78599 * 12 11 10 14 14 C 1.53035 * 109.52852 * 185.84250 * 13 12 11 15 15 C 1.53118 * 109.27627 * 300.82358 * 14 13 12 16 16 C 1.53116 * 109.16507 * 57.65318 * 15 14 13 17 17 H 1.09001 * 109.53338 * 62.30092 * 16 15 14 18 18 N 1.46893 * 109.50652 * 182.40402 * 16 15 14 19 19 C 1.47479 * 111.00130 * 294.80288 * 18 16 15 20 20 C 1.53517 * 87.99753 * 221.26429 * 19 18 16 21 21 C 1.47486 * 111.00063 * 198.83063 * 18 16 15 22 22 C 1.46847 * 111.00373 * 190.00232 * 12 11 10 23 23 H 0.97001 * 120.00494 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46817 * 60.00462 * 9 7 2 25 25 H 1.08996 * 109.47591 * 300.00173 * 9 7 2 26 26 H 1.08992 * 109.46736 * 60.00431 * 10 9 7 27 27 H 1.09003 * 109.46964 * 299.99846 * 10 9 7 28 28 H 1.09002 * 109.47364 * 60.00000 * 11 10 9 29 29 H 1.08996 * 109.47408 * 300.00097 * 11 10 9 30 30 H 1.08997 * 109.46477 * 305.86140 * 13 12 11 31 31 H 1.09009 * 109.46072 * 65.83434 * 13 12 11 32 32 H 1.09003 * 109.50528 * 60.76170 * 14 13 12 33 33 H 1.08996 * 109.50703 * 180.88018 * 14 13 12 34 34 H 1.09003 * 109.52180 * 297.74247 * 15 14 13 35 35 H 1.09005 * 109.52387 * 177.56085 * 15 14 13 36 36 H 1.09002 * 113.47562 * 336.06376 * 19 18 16 37 37 H 1.09003 * 113.47677 * 106.46979 * 19 18 16 38 38 H 1.08999 * 114.16585 * 139.69876 * 20 19 18 39 39 H 1.08992 * 114.17253 * 272.40659 * 20 19 18 40 40 H 1.09001 * 113.47573 * 253.46865 * 21 18 16 41 41 H 1.08996 * 113.47515 * 23.87978 * 21 18 16 42 42 H 1.08999 * 109.46497 * 54.13646 * 22 12 11 43 43 H 1.09006 * 109.45986 * 294.17180 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4806 -4.9870 -0.0025 12 7 2.4352 -6.1035 -0.0031 13 6 3.2047 -6.1388 1.2471 14 6 4.2846 -7.2189 1.1528 15 6 3.6216 -8.5760 0.9012 16 6 2.7877 -8.4981 -0.3806 17 1 3.4402 -8.2859 -1.2276 18 7 2.1021 -9.7788 -0.5983 19 6 3.0714 -10.8602 -0.8552 20 6 2.1219 -11.3796 -1.9439 21 6 1.6656 -9.9130 -2.0007 22 6 1.7512 -7.3808 -0.2418 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8728 -3.6045 0.8877 27 1 2.8715 -3.6038 -0.8923 28 1 0.8536 -5.0441 -0.8922 29 1 0.8544 -5.0454 0.8877 30 1 3.6743 -5.1691 1.4120 31 1 2.5367 -6.3648 2.0784 32 1 4.9611 -6.9864 0.3304 33 1 4.8454 -7.2555 2.0867 34 1 2.9748 -8.8269 1.7419 35 1 4.3895 -9.3416 0.7902 36 1 4.0255 -10.5048 -1.2445 37 1 3.1879 -11.5471 -0.0169 38 1 2.6250 -11.7267 -2.8464 39 1 1.3609 -12.0699 -1.5802 40 1 0.5899 -9.7976 -2.1336 41 1 2.2438 -9.3040 -2.6956 42 1 1.1651 -7.3131 -1.1583 43 1 1.0900 -7.6008 0.5964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702301418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:47 Heat of formation + Delta-G solvation = 21.592229 kcal Electronic energy + Delta-G solvation = -18853.799162 eV Core-core repulsion = 16127.121167 eV Total energy + Delta-G solvation = -2726.677995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54121 -38.28539 -34.62718 -32.93093 -31.27212 -30.82761 -27.10452 -26.75013 -25.98058 -23.86504 -22.53644 -21.74499 -20.14294 -19.77745 -19.65691 -16.65572 -16.08849 -15.95453 -15.24538 -14.94304 -14.64859 -14.44682 -14.20582 -13.78757 -13.36484 -13.00393 -12.69386 -12.53844 -12.23249 -12.15062 -11.68166 -11.40050 -11.25937 -11.21863 -10.93894 -10.89864 -10.71550 -10.65947 -10.52629 -10.23851 -10.18858 -9.55001 -9.29085 -9.05877 -9.00513 -8.31758 -8.01481 -5.96835 -3.98724 3.33026 3.40281 3.44874 3.66395 4.18087 4.31658 4.49715 4.59259 4.64088 4.88681 4.95380 5.09451 5.17281 5.25698 5.36173 5.38996 5.45532 5.49473 5.54767 5.57273 5.66278 5.73801 5.75480 5.82409 5.88760 5.91070 6.01735 6.04544 6.15948 6.23466 6.33854 6.36962 6.74533 6.80919 6.90528 7.16885 7.43941 7.45211 7.72402 7.87455 8.04014 8.47491 9.08810 9.65163 11.14688 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043583 B = 0.003550 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.297860 B = 7885.722716 C = 8259.977889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.539 5.539 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.111 4.111 16 C 0.054 3.946 17 H 0.057 0.943 18 N -0.472 5.472 19 C 0.000 4.000 20 C -0.148 4.148 21 C -0.003 4.003 22 C 0.069 3.931 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.013 0.987 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -21.975 -1.227 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.069 4.069 12 N -0.264 5.264 13 C -0.077 4.077 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.055 4.055 17 H 0.075 0.925 18 N -0.194 5.194 19 C -0.129 4.129 20 C -0.186 4.186 21 C -0.132 4.132 22 C -0.060 4.060 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.852 -21.790 -1.037 22.585 hybrid contribution 0.396 1.066 0.053 1.139 sum 6.248 -20.723 -0.985 21.667 Atomic orbital electron populations 1.69975 1.06058 1.26412 1.51183 1.25032 0.94842 0.99254 0.95440 0.86550 0.80154 0.83853 0.77534 1.19723 1.21036 1.21062 1.21293 0.93078 0.91040 1.50106 0.92636 1.19081 0.94054 0.91425 0.97084 1.21656 0.99134 0.92686 1.00733 1.22262 0.93603 0.90798 1.00196 1.61930 1.26917 1.02758 1.34824 1.22143 0.95485 0.99798 0.90254 1.21571 0.97922 0.93942 1.01866 1.21585 0.98535 0.97473 0.97290 1.22241 0.95111 0.89923 0.98218 0.92522 1.68931 1.24733 1.03785 1.21982 1.23692 0.95400 0.95081 0.98714 1.23147 0.99645 0.96771 0.98997 1.23811 1.02375 0.96161 0.90824 1.21881 0.94669 0.88534 1.00909 0.93115 0.96629 0.96824 0.93435 0.92652 0.91310 0.95343 0.89773 0.95196 0.91228 0.91461 0.91568 0.92257 0.91431 0.89994 0.90779 0.89050 0.89795 0.91139 0.91202 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.23 5.08 -26.73 -0.14 -2.36 16 11 C 0.06 1.07 4.96 -3.83 -0.02 1.05 16 12 N -0.54 -8.53 4.66 -234.68 -1.09 -9.62 16 13 C 0.05 0.74 5.29 -3.84 -0.02 0.72 16 14 C -0.11 -1.34 6.09 -26.65 -0.16 -1.51 16 15 C -0.11 -1.23 5.22 -26.61 -0.14 -1.37 16 16 C 0.05 0.64 1.71 -67.64 -0.12 0.53 16 17 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 18 N -0.47 -5.11 6.13 -236.26 -1.45 -6.56 16 19 C 0.00 0.00 6.61 -7.54 -0.05 -0.05 16 20 C -0.15 -1.11 8.49 -26.10 -0.22 -1.33 16 21 C 0.00 -0.03 7.27 -7.44 -0.05 -0.08 16 22 C 0.07 0.96 4.90 -3.83 -0.02 0.94 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 29 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.08 1.29 6.21 -51.93 -0.32 0.97 16 31 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.58 7.44 -51.93 -0.39 0.19 16 36 H 0.07 0.55 7.84 -51.93 -0.41 0.15 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.66 7.62 -51.93 -0.40 0.26 16 42 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -30.39 330.82 -11.42 -41.81 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -8.09 Total: -4.11 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.49 Total: -16.79 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -1.81 Total: -42.85 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.39 -11.42 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702301418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.397 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds