Wall clock time and date at job start Mon Mar 30 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00096 * 2 1 4 4 C 1.50699 * 109.46870 * 269.99541 * 3 2 1 5 5 H 1.07995 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99515 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99330 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00244 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47100 * 90.00043 * 8 6 4 10 10 H 1.48509 * 109.46953 * 209.99898 * 8 6 4 11 11 H 1.48499 * 109.47170 * 329.99763 * 8 6 4 12 12 C 1.34776 * 119.99520 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99799 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00178 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.47107 * 185.78287 * 14 12 2 16 16 C 1.47969 * 111.00255 * 162.01756 * 15 14 12 17 17 C 1.53578 * 86.14364 * 221.75662 * 16 15 14 18 18 H 1.09002 * 115.41867 * 266.51530 * 17 16 15 19 19 C 1.53274 * 114.49679 * 130.37931 * 17 16 15 20 20 C 1.53477 * 107.50644 * 282.63633 * 19 17 16 21 21 C 1.53533 * 107.36167 * 0.89450 * 20 19 17 22 22 C 1.48194 * 110.99835 * 62.59786 * 15 14 12 23 23 H 1.09005 * 116.58516 * 256.42469 * 22 15 14 24 24 H 1.09004 * 109.46876 * 270.00432 * 1 2 3 25 25 H 1.09001 * 109.46898 * 30.00217 * 1 2 3 26 26 H 1.08998 * 109.47410 * 150.00038 * 1 2 3 27 27 H 1.08995 * 109.47406 * 29.99955 * 3 2 1 28 28 H 1.09002 * 109.47070 * 149.99712 * 3 2 1 29 29 H 0.96996 * 119.99379 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47025 * 65.78558 * 14 12 2 31 31 H 1.08996 * 109.47294 * 305.78159 * 14 12 2 32 32 H 1.09000 * 113.76446 * 107.44887 * 16 15 14 33 33 H 1.09007 * 113.76388 * 336.06624 * 16 15 14 34 34 H 1.09004 * 109.84138 * 163.14368 * 19 17 16 35 35 H 1.08996 * 109.93353 * 42.17632 * 19 17 16 36 36 H 1.08999 * 109.88712 * 120.38633 * 20 19 17 37 37 H 1.09000 * 109.88982 * 241.41048 * 20 19 17 38 38 H 1.09005 * 110.10139 * 101.57843 * 21 20 19 39 39 H 1.09002 * 110.10527 * 223.19622 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2416 6 6 3.1262 2.8779 -1.6727 7 7 3.3450 3.2576 -2.9127 8 14 3.7330 3.9291 -0.2529 9 1 5.1066 3.5081 0.1230 10 1 3.7479 5.3560 -0.6646 11 1 2.8270 3.7592 0.9113 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3338 -3.5853 0.1416 16 6 1.6423 -4.8202 0.5733 17 6 2.8409 -5.0409 1.5078 18 1 3.6401 -5.6630 1.1048 19 6 2.4651 -5.3516 2.9609 20 6 2.0617 -4.0287 3.6264 21 6 2.1749 -2.9275 2.5625 22 6 3.0530 -3.5106 1.4352 23 1 4.0815 -3.1510 1.4014 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5139 29 1 3.8218 4.0835 -3.0899 30 1 0.8382 -2.5768 -0.9353 31 1 0.6836 -2.4859 0.8356 32 1 1.5534 -5.5711 -0.2118 33 1 0.7042 -4.6380 1.0976 34 1 3.3214 -5.7814 3.4807 35 1 1.6281 -6.0493 2.9872 36 1 1.0349 -4.0928 3.9863 37 1 2.7329 -3.8119 4.4574 38 1 1.1869 -2.6771 2.1760 39 1 2.6465 -2.0420 2.9886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706760077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:27 Heat of formation + Delta-G solvation = 16.154686 kcal Electronic energy + Delta-G solvation = -19424.432297 eV Core-core repulsion = 16561.685418 eV Total energy + Delta-G solvation = -2862.746879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31276 -38.62450 -34.89375 -34.09071 -32.53437 -30.76665 -28.80602 -27.70864 -25.94467 -25.23520 -24.06310 -22.12661 -20.21607 -18.63314 -18.10834 -16.97227 -16.79683 -16.44072 -15.85351 -15.24058 -14.72824 -14.51957 -14.14349 -13.63097 -13.21877 -12.99622 -12.55949 -12.44638 -12.25776 -12.06846 -11.87788 -11.57904 -11.45869 -11.35371 -11.06993 -10.87050 -10.55629 -10.52346 -10.41888 -10.28977 -10.12329 -9.51508 -8.94641 -8.57187 -8.54448 -7.66482 -6.06490 -4.04994 3.30071 3.35906 3.37691 3.39074 3.68156 4.05397 4.27746 4.41203 4.46374 4.81832 4.97714 5.01878 5.18251 5.20992 5.27679 5.30310 5.37549 5.49815 5.53423 5.58140 5.68174 5.71290 5.78087 5.83072 5.94060 5.94565 6.06166 6.14771 6.21583 6.38485 6.47602 6.69619 6.94456 7.08884 7.37673 7.63415 8.27894 8.49844 8.96459 9.04729 9.53831 11.07112 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.005413 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.349422 B = 5171.659416 C = 5310.907242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.510 3.490 13 O -0.523 6.523 14 C -0.007 4.007 15 N -0.451 5.451 16 C 0.007 3.993 17 C -0.121 4.121 18 H 0.103 0.897 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.148 4.148 22 C 0.046 3.954 23 H 0.115 0.885 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -15.291 12.525 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.399 6.399 14 C -0.138 4.138 15 N -0.173 5.173 16 C -0.122 4.122 17 C -0.140 4.140 18 H 0.121 0.879 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.186 4.186 22 C -0.063 4.063 23 H 0.133 0.867 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.181 -15.085 11.778 20.112 hybrid contribution -0.365 0.882 1.136 1.484 sum -6.546 -14.203 12.914 20.281 Atomic orbital electron populations 1.21646 0.81181 1.02992 1.00233 1.47841 1.06120 1.07094 1.72406 1.19631 0.92373 0.80008 0.98323 1.21342 1.36916 1.07061 0.91313 0.90790 1.24865 0.95259 0.97360 0.95560 1.69904 1.41529 1.23563 1.18647 0.86843 0.80118 0.79740 0.82924 1.19909 1.21067 1.19137 1.20086 0.88192 0.84601 0.77576 1.90662 1.13619 1.86832 1.48754 1.22777 0.96088 0.92033 1.02890 1.68742 1.17396 1.01029 1.30104 1.23920 0.96076 0.94408 0.97823 1.23516 0.98443 0.97354 0.94709 0.87885 1.21850 1.01120 0.97394 0.94965 1.21928 1.01199 0.94246 0.98198 1.22611 1.00682 0.99084 0.96260 1.24156 0.99946 0.94302 0.87872 0.86742 0.93854 0.90483 0.92328 0.95355 0.94653 0.92586 0.88229 0.91212 0.89375 0.91435 0.91611 0.91722 0.91997 0.91717 0.90746 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.14 59.85 0.61 1.90 16 2 N -0.60 -12.59 2.86 -182.95 -0.52 -13.11 16 3 C 0.22 5.42 4.23 -5.20 -0.02 5.39 16 4 C -0.53 -15.49 9.94 -34.44 -0.34 -15.83 16 5 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 8 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 12 C 0.51 10.62 6.89 -10.99 -0.08 10.55 16 13 O -0.52 -13.15 14.74 5.55 0.08 -13.07 16 14 C -0.01 -0.10 3.62 -4.98 -0.02 -0.12 16 15 N -0.45 -6.95 6.05 -231.59 -1.40 -8.35 16 16 C 0.01 0.07 7.17 -2.94 -0.02 0.05 16 17 C -0.12 -1.34 4.96 -89.36 -0.44 -1.79 16 18 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.12 -1.04 6.31 -26.34 -0.17 -1.20 16 20 C -0.12 -1.14 6.76 -26.21 -0.18 -1.32 16 21 C -0.15 -1.86 5.14 -25.75 -0.13 -1.99 16 22 C 0.05 0.67 3.99 -65.43 -0.26 0.41 16 23 H 0.11 1.93 7.87 -51.93 -0.41 1.52 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 27 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 28 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.10 1.46 7.69 -51.93 -0.40 1.06 16 31 H 0.07 0.90 4.83 -51.93 -0.25 0.65 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.67 7.24 -51.92 -0.38 0.29 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.92 4.69 -51.93 -0.24 0.68 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -34.46 302.90 -8.46 -42.92 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.14 Total: -0.87 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.15 Total: -1.92 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -1.15 Total: -48.84 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.46 -8.46 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706760077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.077 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds