Wall clock time and date at job start Mon Mar 30 2020 03:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 120.00096 * 2 1 4 4 C 1.50699 * 109.46870 * 269.99541 * 3 2 1 5 5 H 1.07995 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99515 * 179.97438 * 4 3 2 7 7 N 1.31521 * 119.99330 * 180.02562 * 6 4 3 8 8 Si 1.86793 * 120.00244 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47100 * 90.00043 * 8 6 4 10 10 H 1.48509 * 109.46953 * 209.99898 * 8 6 4 11 11 H 1.48499 * 109.47170 * 329.99763 * 8 6 4 12 12 C 1.34776 * 119.99520 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99799 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00178 * 359.97438 * 12 2 1 15 15 N 1.46901 * 109.47107 * 185.78287 * 14 12 2 16 16 C 1.47969 * 111.00255 * 162.01756 * 15 14 12 17 17 C 1.53578 * 86.14364 * 221.75662 * 16 15 14 18 18 H 1.09002 * 115.41867 * 266.51530 * 17 16 15 19 19 C 1.53274 * 114.49679 * 130.37931 * 17 16 15 20 20 C 1.53477 * 107.50644 * 282.63633 * 19 17 16 21 21 C 1.53533 * 107.36167 * 0.89450 * 20 19 17 22 22 C 1.48194 * 110.99835 * 62.59786 * 15 14 12 23 23 H 1.09005 * 116.58516 * 256.42469 * 22 15 14 24 24 H 1.09004 * 109.46876 * 270.00432 * 1 2 3 25 25 H 1.09001 * 109.46898 * 30.00217 * 1 2 3 26 26 H 1.08998 * 109.47410 * 150.00038 * 1 2 3 27 27 H 1.08995 * 109.47406 * 29.99955 * 3 2 1 28 28 H 1.09002 * 109.47070 * 149.99712 * 3 2 1 29 29 H 0.96996 * 119.99379 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47025 * 65.78558 * 14 12 2 31 31 H 1.08996 * 109.47294 * 305.78159 * 14 12 2 32 32 H 1.09000 * 113.76446 * 107.44887 * 16 15 14 33 33 H 1.09007 * 113.76388 * 336.06624 * 16 15 14 34 34 H 1.09004 * 109.84138 * 163.14368 * 19 17 16 35 35 H 1.08996 * 109.93353 * 42.17632 * 19 17 16 36 36 H 1.08999 * 109.88712 * 120.38633 * 20 19 17 37 37 H 1.09000 * 109.88982 * 241.41048 * 20 19 17 38 38 H 1.09005 * 110.10139 * 101.57843 * 21 20 19 39 39 H 1.09002 * 110.10527 * 223.19622 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2416 6 6 3.1262 2.8779 -1.6727 7 7 3.3450 3.2576 -2.9127 8 14 3.7330 3.9291 -0.2529 9 1 5.1066 3.5081 0.1230 10 1 3.7479 5.3560 -0.6646 11 1 2.8270 3.7592 0.9113 12 6 2.1388 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 7 2.3338 -3.5853 0.1416 16 6 1.6423 -4.8202 0.5733 17 6 2.8409 -5.0409 1.5078 18 1 3.6401 -5.6630 1.1048 19 6 2.4651 -5.3516 2.9609 20 6 2.0617 -4.0287 3.6264 21 6 2.1749 -2.9275 2.5625 22 6 3.0530 -3.5106 1.4352 23 1 4.0815 -3.1510 1.4014 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5139 29 1 3.8218 4.0835 -3.0899 30 1 0.8382 -2.5768 -0.9353 31 1 0.6836 -2.4859 0.8356 32 1 1.5534 -5.5711 -0.2118 33 1 0.7042 -4.6380 1.0976 34 1 3.3214 -5.7814 3.4807 35 1 1.6281 -6.0493 2.9872 36 1 1.0349 -4.0928 3.9863 37 1 2.7329 -3.8119 4.4574 38 1 1.1869 -2.6771 2.1760 39 1 2.6465 -2.0420 2.9886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706760077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:26 Heat of formation + Delta-G solvation = -10.096036 kcal Electronic energy + Delta-G solvation = -19425.570614 eV Core-core repulsion = 16561.685418 eV Total energy + Delta-G solvation = -2863.885196 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.36453 -40.19698 -36.61634 -35.09422 -34.68870 -31.99465 -30.43579 -28.90246 -27.36466 -26.34414 -25.27187 -23.86944 -21.24203 -19.90302 -19.31055 -19.17039 -18.05438 -17.69086 -17.18715 -16.78436 -16.01552 -15.99278 -15.56497 -14.79978 -14.76876 -14.31581 -14.06111 -13.83494 -13.66225 -13.38308 -13.24603 -13.11960 -12.76817 -12.61653 -12.46149 -12.18399 -12.04514 -11.85211 -11.77160 -11.49329 -11.38421 -11.12548 -10.85634 -10.56290 -9.64491 -9.37905 -8.36394 -6.41663 1.29786 1.34592 1.42893 1.79892 2.25246 2.28886 2.95662 2.97973 3.37611 3.57465 3.66575 3.86963 4.11243 4.23660 4.25340 4.33077 4.40961 4.47082 4.60396 4.62803 4.63934 4.70980 4.78865 4.84354 4.91824 4.93898 4.99257 5.07309 5.16866 5.25400 5.36413 5.43483 5.44255 5.49319 5.60317 6.04055 6.22886 6.59661 6.70264 7.19456 7.44568 8.80983 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.005413 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.349422 B = 5171.659416 C = 5310.907242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.226 3.774 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.237 1.237 12 C 0.499 3.501 13 O -0.580 6.580 14 C 0.007 3.993 15 N -0.489 5.489 16 C 0.017 3.983 17 C -0.110 4.110 18 H 0.101 0.899 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.142 4.142 22 C 0.028 3.972 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.015 0.985 29 H 0.269 0.731 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 -16.587 15.118 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.103 3.897 4 C -0.576 4.576 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.160 1.160 12 C 0.287 3.713 13 O -0.459 6.459 14 C -0.124 4.124 15 N -0.211 5.211 16 C -0.111 4.111 17 C -0.128 4.128 18 H 0.119 0.881 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.181 4.181 22 C -0.081 4.081 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.443 -16.407 14.381 23.394 hybrid contribution 0.334 1.244 0.211 1.306 sum -8.108 -15.163 14.592 22.552 Atomic orbital electron populations 1.21976 0.77662 1.04006 1.02949 1.47977 1.08413 1.05860 1.72043 1.19289 0.92618 0.82586 0.95170 1.21574 1.36893 1.06691 0.92435 0.95628 1.25888 0.95237 0.98966 0.98714 1.70060 1.42710 1.24520 1.21347 0.85684 0.79472 0.77780 0.79796 1.20368 1.19745 1.16002 1.21124 0.87951 0.86228 0.75975 1.90630 1.16335 1.87790 1.51163 1.22731 0.95842 0.89013 1.04777 1.68734 1.18701 1.02374 1.31338 1.24009 0.96627 0.92323 0.98158 1.23470 0.98417 0.94519 0.96439 0.88059 1.21832 1.02361 0.97432 0.92992 1.21927 1.02646 0.93258 0.97178 1.22547 0.99973 0.99196 0.96360 1.24128 0.98296 0.97222 0.88443 0.91105 0.90085 0.91483 0.89462 0.93104 0.96670 0.92230 0.87130 0.87734 0.88198 0.89086 0.90890 0.89321 0.89810 0.91584 0.90102 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.14 127.77 1.29 3.46 16 2 N -0.61 -25.36 2.86 -851.13 -2.43 -27.79 16 3 C 0.23 11.33 4.23 85.63 0.36 11.69 16 4 C -0.54 -32.65 9.94 25.60 0.25 -32.40 16 5 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 6 C 0.01 0.59 5.47 84.65 0.46 1.06 16 7 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 8 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 12 C 0.50 21.01 6.89 87.66 0.60 21.61 16 13 O -0.58 -30.60 14.74 -3.05 -0.04 -30.65 16 14 C 0.01 0.21 3.62 85.56 0.31 0.52 16 15 N -0.49 -14.66 6.05 -886.61 -5.36 -20.02 16 16 C 0.02 0.32 7.17 86.29 0.62 0.94 16 17 C -0.11 -2.21 4.96 -9.92 -0.05 -2.26 16 18 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.11 -1.57 6.31 30.85 0.19 -1.37 16 20 C -0.11 -1.82 6.76 30.93 0.21 -1.61 16 21 C -0.14 -3.38 5.14 31.23 0.16 -3.22 16 22 C 0.03 0.82 3.99 45.68 0.18 1.00 16 23 H 0.07 2.60 7.87 -2.38 -0.02 2.58 16 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 26 H 0.09 1.97 6.60 -2.39 -0.02 1.96 16 27 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 28 H 0.02 0.82 6.85 -2.39 -0.02 0.81 16 29 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 30 H 0.11 3.01 7.69 -2.39 -0.02 2.99 16 31 H 0.11 2.31 4.83 -2.39 -0.01 2.30 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.35 7.24 -2.38 -0.02 1.34 16 34 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.75 4.69 -2.38 -0.01 1.74 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.70 302.90 -0.08 -80.79 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.97 Total: 11.86 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 4.60 Total: -0.57 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -7.49 Total: -108.80 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.04 Total: -30.65 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -80.70 -0.08 -80.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706760077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.689 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds