Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48497 * 109.47442 * 275.55251 * 3 2 1 5 5 H 1.48507 * 109.46740 * 35.55239 * 3 2 1 6 6 H 1.48500 * 109.47149 * 155.54399 * 3 2 1 7 7 C 1.37880 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00196 * 346.70253 * 7 2 1 9 9 C 1.50703 * 119.99971 * 166.69658 * 7 2 1 10 10 C 1.52995 * 115.55147 * 324.60639 * 9 7 2 11 11 N 1.46905 * 109.46869 * 288.80219 * 10 9 7 12 12 C 1.46853 * 111.00289 * 306.41821 * 11 10 9 13 13 C 1.52977 * 109.55438 * 159.60341 * 12 11 10 14 14 C 1.53062 * 109.44421 * 112.94084 * 13 12 11 15 15 C 1.53203 * 109.29195 * 316.14222 * 14 13 12 16 16 C 1.53141 * 109.16480 * 285.24886 * 15 14 13 17 17 C 1.53053 * 109.30538 * 74.78411 * 16 15 14 18 18 H 1.08999 * 109.47685 * 283.84775 * 17 16 15 19 19 N 1.46897 * 109.47704 * 163.83547 * 17 16 15 20 20 C 1.46859 * 110.99999 * 182.36982 * 11 10 9 21 21 C 1.53000 * 117.51377 * 110.30313 * 9 7 2 22 22 C 1.52995 * 60.00075 * 107.47940 * 21 9 7 23 23 H 0.96995 * 120.00552 * 5.00219 * 1 2 3 24 24 H 1.09003 * 109.46903 * 168.80735 * 10 9 7 25 25 H 1.08998 * 109.47499 * 48.80535 * 10 9 7 26 26 H 1.09007 * 109.45637 * 279.62692 * 12 11 10 27 27 H 1.09003 * 109.45762 * 39.57473 * 12 11 10 28 28 H 1.09000 * 109.47015 * 232.93092 * 13 12 11 29 29 H 1.08998 * 109.47281 * 352.93883 * 13 12 11 30 30 H 1.08995 * 109.50611 * 76.07946 * 14 13 12 31 31 H 1.08997 * 109.50356 * 196.20718 * 14 13 12 32 32 H 1.09004 * 109.57351 * 165.31786 * 15 14 13 33 33 H 1.09002 * 109.49658 * 45.13485 * 15 14 13 34 34 H 1.09005 * 109.50164 * 314.82928 * 16 15 14 35 35 H 1.08994 * 109.51004 * 194.74333 * 16 15 14 36 36 H 1.00895 * 110.99915 * 59.99948 * 19 17 16 37 37 H 1.00896 * 111.00058 * 183.96054 * 19 17 16 38 38 H 1.09000 * 109.46282 * 80.37465 * 20 11 10 39 39 H 1.09010 * 109.46260 * 320.40331 * 20 11 10 40 40 H 1.09003 * 117.49822 * 214.96787 * 21 9 7 41 41 H 1.09000 * 117.50272 * 359.97438 * 21 9 7 42 42 H 1.08992 * 117.50103 * 252.50947 * 22 21 9 43 43 H 1.09005 * 117.51697 * 107.47614 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3793 2.1142 -1.3934 5 1 1.5100 2.6159 0.8141 6 1 3.6003 1.4092 0.5796 7 6 2.0045 -1.1940 -0.0005 8 1 1.4863 -2.1170 0.2142 9 6 3.4812 -1.2114 -0.3009 10 6 3.9554 -0.1928 -1.3394 11 7 3.4843 -0.5960 -2.6712 12 6 3.8799 -1.9776 -2.9735 13 6 2.9854 -2.5354 -4.0820 14 6 3.8209 -2.7649 -5.3438 15 6 4.7407 -1.5603 -5.5679 16 6 3.9117 -0.3861 -6.0962 17 6 3.0906 0.2098 -4.9502 18 1 2.2416 -0.4391 -4.7357 19 7 2.6043 1.5410 -5.3367 20 6 3.9686 0.3297 -3.7033 21 6 4.4329 -1.5413 0.8508 22 6 4.1943 -2.5645 -0.2614 23 1 -0.4851 0.8368 -0.0732 24 1 5.0446 -0.1513 -1.3365 25 1 3.5536 0.7902 -1.0941 26 1 4.9190 -1.9940 -3.3026 27 1 3.7732 -2.5900 -2.0781 28 1 2.5507 -3.4807 -3.7570 29 1 2.1883 -1.8241 -4.2982 30 1 4.4234 -3.6650 -5.2226 31 1 3.1592 -2.8818 -6.2021 32 1 5.5105 -1.8190 -6.2950 33 1 5.2092 -1.2800 -4.6245 34 1 3.2407 -0.7379 -6.8800 35 1 4.5771 0.3760 -6.5017 36 1 2.0217 1.4884 -6.1588 37 1 2.1138 1.9824 -4.5734 38 1 4.9987 0.0817 -3.9591 39 1 3.9244 1.3511 -3.3248 40 1 5.3969 -1.0328 0.8685 41 1 3.9911 -1.7455 1.8261 42 1 3.5954 -3.4420 -0.0180 43 1 5.0010 -2.7292 -0.9757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708993688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = 68.813371 kcal Electronic energy + Delta-G solvation = -20679.458874 eV Core-core repulsion = 17954.828541 eV Total energy + Delta-G solvation = -2724.630332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68932 -37.20631 -34.12382 -33.82364 -32.12226 -30.17390 -27.79325 -26.02000 -25.72241 -24.35691 -21.93687 -21.59537 -20.06090 -19.11483 -18.79373 -16.37730 -16.15108 -15.73562 -15.42637 -14.70639 -14.43881 -14.00229 -13.78992 -13.44326 -13.35661 -12.88776 -12.61472 -12.38395 -12.01276 -11.89801 -11.28756 -11.04645 -10.95207 -10.80959 -10.67380 -10.51179 -10.40821 -10.33575 -10.22535 -9.85574 -9.46333 -9.35292 -9.13119 -8.51948 -8.31035 -8.29200 -7.48265 -6.05482 -3.97323 3.29061 3.39973 3.42720 4.28042 4.43994 4.76311 4.86557 5.02159 5.14004 5.28219 5.36247 5.42807 5.49658 5.57423 5.67903 5.69013 5.78444 5.90986 5.96643 5.99336 6.03742 6.11809 6.16522 6.21061 6.26266 6.30053 6.34635 6.40016 6.44797 6.54520 6.61062 6.72762 6.81905 6.91530 7.05877 7.14228 7.39691 7.63807 7.76164 7.87538 7.89738 8.55926 8.96544 9.59551 11.05711 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.009528 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.056181 B = 2937.989901 C = 3571.076520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.087 3.913 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.470 4.470 8 H 0.074 0.926 9 C 0.021 3.979 10 C 0.087 3.913 11 N -0.511 5.511 12 C 0.027 3.973 13 C -0.124 4.124 14 C -0.118 4.118 15 C -0.140 4.140 16 C -0.109 4.109 17 C 0.084 3.916 18 H 0.067 0.933 19 N -0.851 5.851 20 C 0.050 3.950 21 C -0.212 4.212 22 C -0.197 4.197 23 H 0.264 0.736 24 H 0.013 0.987 25 H 0.063 0.937 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.334 0.666 37 H 0.344 0.656 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.178 -1.464 -10.335 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.116 4.116 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.506 4.506 8 H 0.092 0.908 9 C 0.020 3.980 10 C -0.040 4.040 11 N -0.235 5.235 12 C -0.100 4.100 13 C -0.162 4.162 14 C -0.156 4.156 15 C -0.177 4.177 16 C -0.148 4.148 17 C -0.027 4.027 18 H 0.085 0.915 19 N -0.381 5.381 20 C -0.079 4.079 21 C -0.251 4.251 22 C -0.234 4.234 23 H 0.073 0.927 24 H 0.031 0.969 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.250 -1.152 -10.363 13.296 hybrid contribution 0.404 0.540 0.090 0.681 sum 8.654 -0.612 -10.274 13.446 Atomic orbital electron populations 1.69881 1.06427 1.27144 1.49386 1.24864 0.94385 0.98799 0.93567 0.86784 0.79582 0.83718 0.77172 1.20686 1.23324 1.19555 1.20144 0.88600 0.94767 1.47127 0.90793 1.19327 0.94283 0.91503 0.92933 1.21991 0.94565 0.98770 0.88627 1.61899 1.59384 1.01557 1.00635 1.22929 0.95454 0.91024 1.00607 1.21888 0.99034 1.01322 0.93933 1.21717 0.98162 0.97334 0.98389 1.22141 0.98075 0.95401 1.02079 1.21671 0.98628 0.97194 0.97258 1.21757 0.97815 0.89475 0.93677 0.91512 1.58893 1.46932 1.22067 1.10225 1.22355 0.96208 0.97208 0.92095 1.23236 1.00898 1.05389 0.95534 1.22876 1.03406 0.95042 1.02113 0.92653 0.96889 0.91923 0.95290 0.87164 0.92203 0.89905 0.92682 0.92517 0.92718 0.89817 0.92584 0.91751 0.85418 0.84283 0.94034 0.91320 0.91662 0.89601 0.89737 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.95 55.43 0.77 -26.03 16 2 C 0.09 2.46 5.42 -17.82 -0.10 2.37 16 3 Si 0.89 22.24 24.25 -169.99 -4.12 18.12 16 4 H -0.28 -6.73 6.97 56.52 0.39 -6.33 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.49 6.69 56.52 0.38 -6.11 16 7 C -0.47 -12.97 9.55 -34.44 -0.33 -13.30 16 8 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.02 0.48 0.99 -155.66 -0.15 0.33 16 10 C 0.09 1.89 3.94 -3.82 -0.02 1.88 16 11 N -0.51 -10.13 4.34 -234.72 -1.02 -11.15 16 12 C 0.03 0.47 4.29 -3.86 -0.02 0.45 16 13 C -0.12 -1.96 5.55 -26.71 -0.15 -2.11 16 14 C -0.12 -1.51 5.73 -26.59 -0.15 -1.67 16 15 C -0.14 -1.77 5.38 -26.55 -0.14 -1.91 16 16 C -0.11 -1.42 5.30 -26.63 -0.14 -1.56 16 17 C 0.08 1.28 2.87 -67.70 -0.19 1.09 16 18 H 0.07 1.15 4.88 -51.93 -0.25 0.89 16 19 N -0.85 -12.17 9.12 -4.66 -0.04 -12.21 16 20 C 0.05 0.87 4.90 -3.86 -0.02 0.85 16 21 C -0.21 -4.45 9.90 -26.73 -0.26 -4.72 16 22 C -0.20 -3.93 7.41 -26.73 -0.20 -4.13 16 23 H 0.26 7.48 8.32 -40.82 -0.34 7.14 16 24 H 0.01 0.26 8.05 -51.93 -0.42 -0.15 16 25 H 0.06 1.47 1.93 -51.93 -0.10 1.37 16 26 H 0.03 0.47 5.40 -51.92 -0.28 0.19 16 27 H 0.11 2.10 3.38 -51.93 -0.18 1.92 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.44 4.88 -51.93 -0.25 1.19 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.18 2.90 -51.93 -0.15 1.03 16 34 H 0.06 0.67 7.85 -51.93 -0.41 0.27 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.33 4.05 9.04 -39.29 -0.36 3.70 16 37 H 0.34 5.25 8.89 -39.29 -0.35 4.90 16 38 H 0.04 0.68 5.40 -51.93 -0.28 0.40 16 39 H 0.07 1.29 7.54 -51.92 -0.39 0.90 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 43 H 0.07 1.33 6.79 -51.93 -0.35 0.98 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -28.77 301.80 -8.46 -37.23 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.72 Total: 11.92 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.87 Total: -22.43 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.29 Total: -49.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.12 Total: 18.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.77 -8.46 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708993688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.045 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds