Wall clock time and date at job start Mon Mar 30 2020 04:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47177 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.46945 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47152 * 149.99695 * 3 2 1 7 7 C 1.37878 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99854 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47224 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99781 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47091 * 180.02562 * 13 12 11 15 15 C 1.54996 * 113.20405 * 61.45185 * 14 13 12 16 16 C 1.54063 * 104.86340 * 147.40962 * 15 14 13 17 17 N 1.48234 * 106.69621 * 0.96138 * 16 15 14 18 18 C 1.48807 * 105.18158 * 332.51412 * 17 16 15 19 19 C 1.47684 * 108.91390 * 88.16858 * 17 16 15 20 20 C 1.52990 * 109.28335 * 312.90896 * 19 17 16 21 21 C 1.53154 * 110.09561 * 304.79216 * 20 19 17 22 22 H 0.97003 * 119.99980 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47601 * 60.00060 * 9 7 2 24 24 H 1.09000 * 109.47668 * 299.99724 * 9 7 2 25 25 H 1.09000 * 109.47484 * 60.00139 * 10 9 7 26 26 H 1.09003 * 109.47257 * 299.99731 * 10 9 7 27 27 H 1.09000 * 109.46787 * 59.99699 * 11 10 9 28 28 H 1.08994 * 109.46994 * 299.99930 * 11 10 9 29 29 H 1.00901 * 110.99733 * 56.04879 * 12 11 10 30 30 H 1.09000 * 109.47106 * 60.00019 * 13 12 11 31 31 H 1.09004 * 109.46945 * 300.00184 * 13 12 11 32 32 H 1.09002 * 110.37873 * 28.53233 * 15 14 13 33 33 H 1.09002 * 110.38098 * 266.29037 * 15 14 13 34 34 H 1.09005 * 110.01056 * 120.27163 * 16 15 14 35 35 H 1.09000 * 110.01345 * 241.64953 * 16 15 14 36 36 H 1.08995 * 110.93676 * 160.89732 * 18 17 16 37 37 H 1.09002 * 110.92654 * 284.56881 * 18 17 16 38 38 H 1.08992 * 109.49989 * 72.85585 * 19 17 16 39 39 H 1.09006 * 109.49631 * 192.97145 * 19 17 16 40 40 H 1.08997 * 109.36684 * 64.98095 * 20 19 17 41 41 H 1.08997 * 109.36614 * 184.72172 * 20 19 17 42 42 H 1.08998 * 109.63127 * 173.70324 * 21 20 19 43 43 H 1.09004 * 109.62479 * 294.09364 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 7.5098 -4.0606 0.0045 14 6 7.9812 -5.5161 0.0044 15 6 7.5232 -6.3061 -1.2480 16 6 8.6567 -7.3148 -1.5153 17 7 9.6703 -7.1075 -0.4537 18 6 9.5272 -5.6821 -0.0512 19 6 9.3244 -7.9492 0.7095 20 6 7.8370 -7.7848 1.0275 21 6 7.5041 -6.3045 1.2367 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8888 25 1 3.6587 -3.1501 -0.8892 26 1 3.6580 -3.1505 0.8908 27 1 5.9142 -2.1228 0.8927 28 1 5.9157 -2.1223 -0.8872 29 1 5.6665 -4.5377 -0.7789 30 1 7.8856 -3.5567 0.8950 31 1 7.8878 -3.5565 -0.8850 32 1 7.4046 -5.6344 -2.0982 33 1 6.5889 -6.8298 -1.0457 34 1 8.2692 -8.3326 -1.4675 35 1 9.0983 -7.1289 -2.4943 36 1 9.9726 -5.5072 0.9280 37 1 9.9634 -5.0205 -0.7997 38 1 9.5338 -8.9935 0.4780 39 1 9.9170 -7.6407 1.5708 40 1 7.2450 -8.1748 0.1996 41 1 7.5980 -8.3389 1.9352 42 1 6.4269 -6.1841 1.3518 43 1 8.0110 -5.9379 2.1294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709416814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:45 Heat of formation + Delta-G solvation = -9.340037 kcal Electronic energy + Delta-G solvation = -18913.315278 eV Core-core repulsion = 16185.295959 eV Total energy + Delta-G solvation = -2728.019318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14088 -36.58411 -33.92637 -32.39545 -32.28386 -30.81932 -29.59395 -27.07421 -24.92452 -23.99007 -22.71789 -21.99378 -20.40310 -20.10623 -18.96894 -16.79796 -16.53661 -16.02549 -15.46810 -14.76664 -14.53930 -14.17176 -13.81592 -13.67695 -13.47737 -12.97819 -12.87904 -12.68207 -12.54797 -12.19017 -11.85371 -11.72616 -11.68229 -11.16655 -11.10813 -10.95769 -10.80120 -10.77118 -10.54965 -10.43468 -9.94487 -9.72785 -9.57414 -9.16466 -8.70459 -8.52618 -8.22674 -6.02954 -4.00694 3.31001 3.38388 3.42346 3.78050 4.14869 4.32268 4.46221 4.50658 4.75605 4.85510 4.88426 4.97692 5.06023 5.18908 5.28654 5.30921 5.31136 5.42838 5.56602 5.58927 5.61967 5.65698 5.71754 5.74328 5.77540 5.84025 5.87582 6.05169 6.16547 6.17593 6.21304 6.52989 6.55718 6.58542 6.69808 6.92138 7.21379 7.36081 7.44566 7.56695 7.81700 8.56328 9.02571 9.59716 11.10653 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049577 B = 0.003437 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.638323 B = 8144.488082 C = 8306.086937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.687 5.687 13 C 0.083 3.917 14 C -0.089 4.089 15 C -0.143 4.143 16 C 0.030 3.970 17 N -0.498 5.498 18 C 0.037 3.963 19 C 0.033 3.967 20 C -0.158 4.158 21 C -0.103 4.103 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.008 0.992 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.338 0.662 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.301 -14.474 -0.343 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.318 5.318 13 C -0.047 4.047 14 C -0.091 4.091 15 C -0.182 4.182 16 C -0.099 4.099 17 N -0.218 5.218 18 C -0.092 4.092 19 C -0.095 4.095 20 C -0.196 4.196 21 C -0.141 4.141 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.155 0.845 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.702 -14.599 0.149 25.332 hybrid contribution -0.408 1.388 -0.640 1.582 sum 20.294 -13.211 -0.491 24.220 Atomic orbital electron populations 1.69921 1.06304 1.26836 1.51353 1.25049 0.94739 0.99188 0.94639 0.86762 0.80363 0.83619 0.78429 1.20378 1.21394 1.19034 1.21155 0.89547 0.94450 1.50537 0.91051 1.19541 0.97139 0.92309 0.96082 1.21437 0.91134 0.99626 1.01489 1.22146 0.97597 0.87644 0.99792 1.60488 1.06488 1.14948 1.49859 1.21603 0.88981 0.93724 1.00415 1.22462 0.95839 0.95050 0.95734 1.22963 0.99358 0.98263 0.97607 1.23065 0.91335 0.99167 0.96332 1.66429 1.43639 1.04420 1.07348 1.23598 0.93974 0.90357 1.01252 1.22584 0.94802 0.98225 0.93924 1.22287 0.97467 0.97676 1.02212 1.21712 1.02782 0.93155 0.96428 0.92776 0.96628 0.97324 0.93139 0.91981 0.91529 0.95883 0.84465 0.90965 0.95306 0.91642 0.90698 0.91112 0.90475 0.90313 0.90164 0.90796 0.90870 0.91363 0.91647 0.90046 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.97 5.41 -26.73 -0.14 -2.12 16 11 C 0.06 0.92 5.69 -3.82 -0.02 0.90 16 12 N -0.69 -9.31 5.92 -113.78 -0.67 -9.98 16 13 C 0.08 0.94 5.12 -3.83 -0.02 0.92 16 14 C -0.09 -0.86 0.90 -151.62 -0.14 -1.00 16 15 C -0.14 -1.33 4.61 -25.12 -0.12 -1.44 16 16 C 0.03 0.26 6.20 -2.53 -0.02 0.24 16 17 N -0.50 -4.68 6.07 -228.78 -1.39 -6.07 16 18 C 0.04 0.34 5.99 -1.39 -0.01 0.33 16 19 C 0.03 0.28 5.85 -3.40 -0.02 0.26 16 20 C -0.16 -1.35 5.52 -26.66 -0.15 -1.50 16 21 C -0.10 -1.03 4.93 -26.19 -0.13 -1.15 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 24 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.34 4.41 7.90 -39.29 -0.31 4.10 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.62 8.02 -51.93 -0.42 0.21 16 33 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 34 H 0.07 0.58 6.94 -51.93 -0.36 0.22 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 40 H 0.07 0.60 5.37 -51.93 -0.28 0.32 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 43 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -30.24 322.53 -10.33 -40.57 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.93 Total: -0.62 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.30 Total: -18.56 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -1.29 Total: -43.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.24 -10.33 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709416814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds