Wall clock time and date at job start Mon Mar 30 2020 04:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47177 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.46945 * 29.99925 * 3 2 1 6 6 H 1.48497 * 109.47152 * 149.99695 * 3 2 1 7 7 C 1.37878 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99854 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47224 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99781 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47091 * 180.02562 * 13 12 11 15 15 C 1.54996 * 113.20405 * 61.45185 * 14 13 12 16 16 C 1.54063 * 104.86340 * 147.40962 * 15 14 13 17 17 N 1.48234 * 106.69621 * 0.96138 * 16 15 14 18 18 C 1.48807 * 105.18158 * 332.51412 * 17 16 15 19 19 C 1.47684 * 108.91390 * 88.16858 * 17 16 15 20 20 C 1.52990 * 109.28335 * 312.90896 * 19 17 16 21 21 C 1.53154 * 110.09561 * 304.79216 * 20 19 17 22 22 H 0.97003 * 119.99980 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47601 * 60.00060 * 9 7 2 24 24 H 1.09000 * 109.47668 * 299.99724 * 9 7 2 25 25 H 1.09000 * 109.47484 * 60.00139 * 10 9 7 26 26 H 1.09003 * 109.47257 * 299.99731 * 10 9 7 27 27 H 1.09000 * 109.46787 * 59.99699 * 11 10 9 28 28 H 1.08994 * 109.46994 * 299.99930 * 11 10 9 29 29 H 1.00901 * 110.99733 * 56.04879 * 12 11 10 30 30 H 1.09000 * 109.47106 * 60.00019 * 13 12 11 31 31 H 1.09004 * 109.46945 * 300.00184 * 13 12 11 32 32 H 1.09002 * 110.37873 * 28.53233 * 15 14 13 33 33 H 1.09002 * 110.38098 * 266.29037 * 15 14 13 34 34 H 1.09005 * 110.01056 * 120.27163 * 16 15 14 35 35 H 1.09000 * 110.01345 * 241.64953 * 16 15 14 36 36 H 1.08995 * 110.93676 * 160.89732 * 18 17 16 37 37 H 1.09002 * 110.92654 * 284.56881 * 18 17 16 38 38 H 1.08992 * 109.49989 * 72.85585 * 19 17 16 39 39 H 1.09006 * 109.49631 * 192.97145 * 19 17 16 40 40 H 1.08997 * 109.36684 * 64.98095 * 20 19 17 41 41 H 1.08997 * 109.36614 * 184.72172 * 20 19 17 42 42 H 1.08998 * 109.63127 * 173.70324 * 21 20 19 43 43 H 1.09004 * 109.62479 * 294.09364 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 7.5098 -4.0606 0.0045 14 6 7.9812 -5.5161 0.0044 15 6 7.5232 -6.3061 -1.2480 16 6 8.6567 -7.3148 -1.5153 17 7 9.6703 -7.1075 -0.4537 18 6 9.5272 -5.6821 -0.0512 19 6 9.3244 -7.9492 0.7095 20 6 7.8370 -7.7848 1.0275 21 6 7.5041 -6.3045 1.2367 22 1 -0.4850 0.8401 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8888 25 1 3.6587 -3.1501 -0.8892 26 1 3.6580 -3.1505 0.8908 27 1 5.9142 -2.1228 0.8927 28 1 5.9157 -2.1223 -0.8872 29 1 5.6665 -4.5377 -0.7789 30 1 7.8856 -3.5567 0.8950 31 1 7.8878 -3.5565 -0.8850 32 1 7.4046 -5.6344 -2.0982 33 1 6.5889 -6.8298 -1.0457 34 1 8.2692 -8.3326 -1.4675 35 1 9.0983 -7.1289 -2.4943 36 1 9.9726 -5.5072 0.9280 37 1 9.9634 -5.0205 -0.7997 38 1 9.5338 -8.9935 0.4780 39 1 9.9170 -7.6407 1.5708 40 1 7.2450 -8.1748 0.1996 41 1 7.5980 -8.3389 1.9352 42 1 6.4269 -6.1841 1.3518 43 1 8.0110 -5.9379 2.1294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709416814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:45 Heat of formation + Delta-G solvation = -30.348193 kcal Electronic energy + Delta-G solvation = -18914.226260 eV Core-core repulsion = 16185.295959 eV Total energy + Delta-G solvation = -2728.930300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.87743 -37.80311 -35.61276 -33.99937 -33.02909 -32.22719 -30.36322 -28.64967 -26.00403 -24.96176 -23.59660 -23.38154 -21.86763 -21.08438 -19.77613 -18.91268 -17.40398 -16.92334 -16.49302 -16.40177 -15.63331 -15.46762 -15.08972 -14.75934 -14.51628 -14.40595 -13.83603 -13.70044 -13.59010 -13.49961 -13.11775 -12.98496 -12.64908 -12.53304 -12.45376 -11.95718 -11.81580 -11.80680 -11.63858 -11.51198 -11.47181 -11.33444 -11.22998 -11.11815 -10.77131 -9.45557 -9.29023 -8.30186 -6.34684 1.35279 1.37708 1.49977 2.35931 3.05030 3.07129 3.16995 3.53810 3.74732 3.99294 4.10112 4.16024 4.20342 4.27229 4.30020 4.32659 4.47857 4.55650 4.60135 4.67083 4.68968 4.76653 4.86419 4.90463 4.94178 4.96041 4.98202 5.03941 5.06158 5.11257 5.16417 5.29258 5.39620 5.42377 5.51246 5.60271 5.65869 5.84442 6.01448 6.10970 6.29000 6.46973 6.73804 7.30035 8.86917 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049577 B = 0.003437 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.638323 B = 8144.488082 C = 8306.086937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.071 3.929 12 N -0.690 5.690 13 C 0.085 3.915 14 C -0.085 4.085 15 C -0.140 4.140 16 C 0.032 3.968 17 N -0.507 5.507 18 C 0.041 3.959 19 C 0.035 3.965 20 C -0.153 4.153 21 C -0.101 4.101 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.341 0.659 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.863 -14.091 -0.488 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.321 5.321 13 C -0.044 4.044 14 C -0.087 4.087 15 C -0.179 4.179 16 C -0.097 4.097 17 N -0.227 5.227 18 C -0.089 4.089 19 C -0.094 4.094 20 C -0.191 4.191 21 C -0.139 4.139 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.284 -14.242 0.003 27.295 hybrid contribution -1.276 1.165 -0.589 1.825 sum 22.008 -13.077 -0.587 25.607 Atomic orbital electron populations 1.70081 1.08402 1.28213 1.52738 1.26091 0.95674 1.03756 0.94062 0.85588 0.79485 0.77885 0.79251 1.19055 1.20941 1.16863 1.21528 0.92337 0.93034 1.50375 0.95315 1.19488 0.93724 0.95091 0.96484 1.21258 0.94124 0.96835 1.00603 1.21871 0.94452 0.89261 1.00275 1.60415 1.08118 1.13373 1.50214 1.21621 0.87251 0.94904 1.00638 1.22389 0.96466 0.94054 0.95824 1.22927 0.99393 0.98302 0.97277 1.23063 0.90958 0.99300 0.96357 1.66434 1.43914 1.04538 1.07829 1.23586 0.93186 0.90446 1.01634 1.22610 0.94405 0.98583 0.93773 1.22236 0.97780 0.96662 1.02441 1.21664 1.01404 0.94252 0.96552 0.92479 0.96152 0.96314 0.93632 0.93398 0.91282 0.95122 0.84138 0.90944 0.94765 0.91802 0.91231 0.90496 0.90168 0.89818 0.89954 0.89942 0.90442 0.91588 0.91050 0.92051 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.03 5.47 84.65 0.46 0.50 16 3 Si 0.96 44.72 27.47 68.60 1.88 46.60 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.56 5.41 30.60 0.17 -3.39 16 11 C 0.07 2.15 5.69 86.30 0.49 2.64 16 12 N -0.69 -17.76 5.92 -513.89 -3.04 -20.80 16 13 C 0.09 1.77 5.12 86.30 0.44 2.22 16 14 C -0.09 -1.52 0.90 -50.31 -0.05 -1.57 16 15 C -0.14 -2.40 4.61 31.64 0.15 -2.25 16 16 C 0.03 0.49 6.20 86.41 0.54 1.03 16 17 N -0.51 -8.46 6.07 -877.73 -5.32 -13.79 16 18 C 0.04 0.66 5.99 86.83 0.52 1.18 16 19 C 0.03 0.51 5.85 86.15 0.50 1.01 16 20 C -0.15 -2.38 5.52 30.64 0.17 -2.21 16 21 C -0.10 -1.89 4.93 30.94 0.15 -1.73 16 22 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 23 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 24 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.34 8.51 7.90 -89.69 -0.71 7.80 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.11 8.02 -2.39 -0.02 1.09 16 33 H 0.07 1.26 6.95 -2.39 -0.02 1.25 16 34 H 0.08 1.11 6.94 -2.38 -0.02 1.09 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.29 7.70 -2.39 -0.02 1.27 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.07 7.87 -2.38 -0.02 1.05 16 40 H 0.07 1.07 5.37 -2.39 -0.01 1.05 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.40 7.68 -2.39 -0.02 1.38 16 43 H 0.06 1.09 8.07 -2.39 -0.02 1.07 16 Total: -1.00 -65.15 322.53 -2.08 -67.23 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.19 Total: 15.75 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.91 Total: -34.33 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -8.07 Total: -95.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -65.15 -2.08 -67.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709416814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.883 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds