Wall clock time and date at job start Mon Mar 30 2020 04:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.47591 * 110.99819 * 266.10553 * 13 12 11 15 15 C 1.52920 * 87.79564 * 221.71926 * 14 13 12 16 16 C 1.47588 * 111.00219 * 169.99946 * 13 12 11 17 17 C 1.52622 * 114.12339 * 271.86450 * 15 14 13 18 18 C 1.53324 * 108.89012 * 173.63326 * 17 15 14 19 19 C 1.53019 * 109.16907 * 55.26166 * 18 17 15 20 20 N 1.46821 * 109.79472 * 298.94464 * 19 18 17 21 21 C 1.47041 * 111.14871 * 63.57819 * 20 19 18 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.09008 * 113.49765 * 336.45593 * 14 13 12 32 32 H 1.09002 * 113.50008 * 106.98179 * 14 13 12 33 33 H 1.08995 * 113.49486 * 252.99819 * 16 13 12 34 34 H 1.08999 * 113.49833 * 23.53941 * 16 13 12 35 35 H 1.08995 * 109.57008 * 293.45711 * 17 15 14 36 36 H 1.08997 * 109.56299 * 53.81240 * 17 15 14 37 37 H 1.09003 * 109.51668 * 175.16816 * 18 17 15 38 38 H 1.08999 * 109.52319 * 295.34955 * 18 17 15 39 39 H 1.08994 * 109.42298 * 59.04525 * 19 18 17 40 40 H 1.09002 * 109.41953 * 178.85099 * 19 18 17 41 41 H 1.00896 * 110.99891 * 299.51660 * 20 19 18 42 42 H 1.09001 * 109.49953 * 180.92729 * 21 20 19 43 43 H 1.08997 * 109.50189 * 60.81502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 7 1.7397 -7.4222 -0.0007 14 6 1.5549 -7.9275 1.3736 15 6 1.8849 -9.3228 0.8419 16 6 2.6506 -8.5587 -0.2394 17 6 0.6752 -10.0941 0.3212 18 6 1.1583 -11.3984 -0.3239 19 6 1.9979 -12.1793 0.6894 20 7 3.1710 -11.3869 1.0787 21 6 2.7715 -10.1504 1.7669 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8531 -5.0451 0.8897 28 1 0.8537 -5.0446 -0.8902 29 1 3.1015 -6.0923 -0.8891 30 1 3.1004 -6.0924 0.8909 31 1 2.2923 -7.5458 2.0799 32 1 0.5320 -7.8319 1.7380 33 1 2.5502 -8.9947 -1.2333 34 1 3.6864 -8.3490 0.0274 35 1 0.0042 -10.3229 1.1490 36 1 0.1504 -9.4923 -0.4208 37 1 0.2979 -11.9974 -0.6227 38 1 1.7651 -11.1687 -1.1998 39 1 1.3951 -12.3920 1.5722 40 1 2.3266 -13.1171 0.2416 41 1 3.7520 -11.1842 0.2791 42 1 3.6602 -9.5762 2.0287 43 1 2.2191 -10.4003 2.6727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709849201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:00 Heat of formation + Delta-G solvation = 6.824329 kcal Electronic energy + Delta-G solvation = -18567.085572 eV Core-core repulsion = 15839.767194 eV Total energy + Delta-G solvation = -2727.318379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17931 -37.44540 -34.82671 -32.68399 -31.86660 -30.79381 -28.32714 -26.19221 -25.47706 -24.18936 -23.15955 -21.73504 -20.83375 -20.00275 -18.58031 -16.28289 -16.19888 -15.93327 -15.72529 -15.15767 -14.88207 -14.43776 -14.21715 -13.70498 -13.37343 -13.08380 -12.73618 -12.47968 -12.31730 -12.02459 -11.81445 -11.61852 -11.52678 -11.29511 -11.25143 -10.93372 -10.62654 -10.46791 -10.41232 -10.33212 -10.28599 -9.60644 -9.23917 -9.01952 -8.97271 -8.50155 -8.31341 -5.96403 -3.98680 3.33400 3.39310 3.42832 3.84117 3.96806 4.21677 4.43335 4.48475 4.72015 4.75810 4.83544 5.04788 5.09570 5.16853 5.21570 5.26863 5.38969 5.42720 5.47671 5.54346 5.57290 5.63431 5.66944 5.72931 5.89894 5.91855 5.98913 6.03596 6.10149 6.27662 6.36428 6.59337 6.67299 6.85932 6.98892 7.03500 7.09433 7.25201 7.72754 7.88919 8.04903 8.47616 9.08894 9.65040 11.14992 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.065491 B = 0.002998 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.438168 B = 9337.412122 C = 9497.666692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.107 4.107 12 C 0.021 3.979 13 N -0.467 5.467 14 C 0.010 3.990 15 C -0.125 4.125 16 C 0.006 3.994 17 C -0.088 4.088 18 C -0.156 4.156 19 C 0.056 3.944 20 N -0.684 5.684 21 C 0.073 3.927 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.340 0.660 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -24.227 1.585 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.108 4.108 13 N -0.189 5.189 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.195 4.195 19 C -0.074 4.074 20 N -0.311 5.311 21 C -0.058 4.058 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.157 0.843 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.606 -24.317 1.735 24.644 hybrid contribution 0.789 1.652 -0.307 1.857 sum 4.395 -22.665 1.428 23.131 Atomic orbital electron populations 1.69975 1.06051 1.26507 1.51040 1.25040 0.94850 0.99234 0.95438 0.86608 0.79838 0.83552 0.78081 1.20677 1.21221 1.19920 1.21293 0.92999 0.91236 1.50311 0.92799 1.19081 0.94016 0.91315 0.97141 1.21611 0.99090 0.94147 0.99931 1.21518 0.97664 0.93288 1.01994 1.22807 0.96456 0.90767 1.00734 1.68937 1.32524 1.00970 1.16424 1.23832 1.02661 0.93153 0.92285 1.22392 0.97664 0.95080 0.97605 1.23785 0.95818 0.93104 0.99630 1.21194 0.95555 0.95240 1.00538 1.22271 1.00831 0.97253 0.99192 1.22007 0.91280 0.96169 0.97951 1.60750 1.18997 1.19939 1.31409 1.21940 0.97941 0.89495 0.96383 0.93050 0.96659 0.96728 0.93744 0.93587 0.92707 0.91898 0.91339 0.94021 0.91165 0.89805 0.90239 0.91575 0.91715 0.90525 0.91377 0.91944 0.91006 0.90932 0.84288 0.90673 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.11 -1.92 5.54 -26.73 -0.15 -2.07 16 12 C 0.02 0.30 4.82 -3.83 -0.02 0.28 16 13 N -0.47 -6.10 6.11 -244.53 -1.50 -7.59 16 14 C 0.01 0.12 6.88 -7.27 -0.05 0.07 16 15 C -0.13 -1.14 0.93 -155.01 -0.14 -1.29 16 16 C 0.01 0.06 6.75 -7.25 -0.05 0.01 16 17 C -0.09 -0.78 5.18 -26.76 -0.14 -0.92 16 18 C -0.16 -1.14 6.05 -26.55 -0.16 -1.30 16 19 C 0.06 0.39 6.48 -3.86 -0.03 0.37 16 20 N -0.68 -5.37 6.88 -113.99 -0.78 -6.16 16 21 C 0.07 0.60 5.78 -3.99 -0.02 0.57 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.04 0.58 7.31 -51.93 -0.38 0.21 16 31 H 0.07 0.76 7.38 -51.92 -0.38 0.38 16 32 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 34 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.81 7.95 -51.93 -0.41 0.40 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.48 7.81 -51.93 -0.41 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.34 2.46 8.84 -39.29 -0.35 2.12 16 42 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -30.62 334.92 -11.15 -41.77 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.19 Total: -2.93 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.44 Total: -20.29 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -1.54 Total: -40.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.62 -11.15 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709849201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds