Wall clock time and date at job start Mon Mar 30 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.47591 * 110.99819 * 266.10553 * 13 12 11 15 15 C 1.52920 * 87.79564 * 221.71926 * 14 13 12 16 16 C 1.47588 * 111.00219 * 169.99946 * 13 12 11 17 17 C 1.52622 * 114.12339 * 271.86450 * 15 14 13 18 18 C 1.53324 * 108.89012 * 173.63326 * 17 15 14 19 19 C 1.53019 * 109.16907 * 55.26166 * 18 17 15 20 20 N 1.46821 * 109.79472 * 298.94464 * 19 18 17 21 21 C 1.47041 * 111.14871 * 63.57819 * 20 19 18 22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.09008 * 113.49765 * 336.45593 * 14 13 12 32 32 H 1.09002 * 113.50008 * 106.98179 * 14 13 12 33 33 H 1.08995 * 113.49486 * 252.99819 * 16 13 12 34 34 H 1.08999 * 113.49833 * 23.53941 * 16 13 12 35 35 H 1.08995 * 109.57008 * 293.45711 * 17 15 14 36 36 H 1.08997 * 109.56299 * 53.81240 * 17 15 14 37 37 H 1.09003 * 109.51668 * 175.16816 * 18 17 15 38 38 H 1.08999 * 109.52319 * 295.34955 * 18 17 15 39 39 H 1.08994 * 109.42298 * 59.04525 * 19 18 17 40 40 H 1.09002 * 109.41953 * 178.85099 * 19 18 17 41 41 H 1.00896 * 110.99891 * 299.51660 * 20 19 18 42 42 H 1.09001 * 109.49953 * 180.92729 * 21 20 19 43 43 H 1.08997 * 109.50189 * 60.81502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 7 1.7397 -7.4222 -0.0007 14 6 1.5549 -7.9275 1.3736 15 6 1.8849 -9.3228 0.8419 16 6 2.6506 -8.5587 -0.2394 17 6 0.6752 -10.0941 0.3212 18 6 1.1583 -11.3984 -0.3239 19 6 1.9979 -12.1793 0.6894 20 7 3.1710 -11.3869 1.0787 21 6 2.7715 -10.1504 1.7669 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5566 0.8902 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8531 -5.0451 0.8897 28 1 0.8537 -5.0446 -0.8902 29 1 3.1015 -6.0923 -0.8891 30 1 3.1004 -6.0924 0.8909 31 1 2.2923 -7.5458 2.0799 32 1 0.5320 -7.8319 1.7380 33 1 2.5502 -8.9947 -1.2333 34 1 3.6864 -8.3490 0.0274 35 1 0.0042 -10.3229 1.1490 36 1 0.1504 -9.4923 -0.4208 37 1 0.2979 -11.9974 -0.6227 38 1 1.7651 -11.1687 -1.1998 39 1 1.3951 -12.3920 1.5722 40 1 2.3266 -13.1171 0.2416 41 1 3.7520 -11.1842 0.2791 42 1 3.6602 -9.5762 2.0287 43 1 2.2191 -10.4003 2.6727 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709849201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:59 Heat of formation + Delta-G solvation = -14.330631 kcal Electronic energy + Delta-G solvation = -18568.002920 eV Core-core repulsion = 15839.767194 eV Total energy + Delta-G solvation = -2728.235727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01809 -38.25174 -36.53207 -34.58816 -32.59903 -32.06084 -29.78345 -27.05071 -27.03125 -24.97780 -24.54253 -22.64618 -21.98486 -21.73746 -19.34188 -18.45282 -16.92512 -16.89276 -16.79532 -16.47347 -16.14328 -15.62869 -15.38144 -14.67069 -14.50489 -14.19051 -14.01635 -13.74080 -13.65191 -13.13694 -13.09905 -12.92688 -12.72570 -12.56899 -12.25572 -12.20345 -12.16196 -11.98423 -11.85568 -11.43165 -11.34063 -11.26102 -11.11053 -10.89465 -10.57819 -9.93555 -9.18932 -8.21859 -6.33978 1.38091 1.40196 1.51384 2.39329 2.98940 3.10681 3.17559 3.54438 3.67605 3.91383 3.98779 4.08287 4.14614 4.22687 4.34257 4.41462 4.47565 4.51197 4.54894 4.57618 4.65662 4.74941 4.78866 4.81176 4.87877 4.99704 5.03255 5.07171 5.10401 5.19651 5.25127 5.31523 5.34253 5.38511 5.43207 5.52169 5.74313 5.83898 6.05559 6.12476 6.23039 6.49440 6.83550 7.35577 8.90251 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.065491 B = 0.002998 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.438168 B = 9337.412122 C = 9497.666692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.097 4.097 12 C 0.032 3.968 13 N -0.489 5.489 14 C 0.005 3.995 15 C -0.109 4.109 16 C 0.010 3.990 17 C -0.088 4.088 18 C -0.149 4.149 19 C 0.058 3.942 20 N -0.687 5.687 21 C 0.078 3.922 22 H 0.264 0.736 23 H -0.013 1.013 24 H -0.012 1.012 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.344 0.656 42 H 0.079 0.921 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -25.075 1.756 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.097 4.097 13 N -0.211 5.211 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.188 4.188 19 C -0.072 4.072 20 N -0.315 5.315 21 C -0.052 4.052 22 H 0.073 0.927 23 H 0.005 0.995 24 H 0.006 0.994 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.162 0.838 42 H 0.097 0.903 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.359 -25.188 1.902 25.822 hybrid contribution 0.178 1.888 -0.365 1.931 sum 5.536 -23.300 1.538 23.998 Atomic orbital electron populations 1.70116 1.07940 1.27829 1.51705 1.26058 0.95818 1.03605 0.94658 0.85401 0.78652 0.78138 0.78584 1.19655 1.20616 1.18581 1.21741 0.93595 0.92454 1.50557 0.92082 1.19009 0.94492 0.93413 0.94445 1.21412 0.97953 0.93617 1.00456 1.21337 0.97905 0.93317 1.00902 1.22603 0.95393 0.90274 1.01404 1.68891 1.33432 1.00958 1.17824 1.23909 1.02406 0.94528 0.91599 1.22294 0.97609 0.94212 0.97022 1.23816 0.95994 0.91863 1.00158 1.21181 0.95412 0.95802 1.00181 1.22219 1.01161 0.96413 0.99057 1.22025 0.90939 0.96399 0.97827 1.60764 1.19345 1.19594 1.31780 1.21886 0.97753 0.89516 0.96063 0.92733 0.99482 0.99397 0.93008 0.93032 0.93555 0.93278 0.90907 0.93057 0.90575 0.90696 0.90073 0.90520 0.91527 0.92491 0.90587 0.92064 0.91088 0.89751 0.83777 0.90307 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.31 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 11 C -0.10 -3.51 5.54 30.59 0.17 -3.34 16 12 C 0.03 0.90 4.82 86.30 0.42 1.31 16 13 N -0.49 -12.39 6.11 -927.54 -5.67 -18.06 16 14 C 0.01 0.11 6.88 83.69 0.58 0.69 16 15 C -0.11 -1.84 0.93 -52.50 -0.05 -1.89 16 16 C 0.01 0.20 6.75 83.70 0.56 0.76 16 17 C -0.09 -1.48 5.18 30.58 0.16 -1.32 16 18 C -0.15 -1.93 6.05 30.71 0.19 -1.74 16 19 C 0.06 0.69 6.48 86.32 0.56 1.24 16 20 N -0.69 -9.24 6.88 -514.55 -3.54 -12.78 16 21 C 0.08 1.13 5.78 86.12 0.50 1.62 16 22 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 23 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 24 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.05 1.35 7.31 -2.39 -0.02 1.33 16 31 H 0.08 1.55 7.38 -2.38 -0.02 1.53 16 32 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 33 H 0.08 1.53 7.77 -2.39 -0.02 1.51 16 34 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.82 7.81 -2.39 -0.02 0.80 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.34 4.16 8.84 -89.70 -0.79 3.37 16 42 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.91 334.92 -2.67 -68.58 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.15 Total: 10.44 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.08 Total: -36.90 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -8.93 Total: -89.30 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.91 -2.67 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709849201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.250 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds