Wall clock time and date at job start Mon Mar 30 2020 04:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00069 * 2 1 4 4 H 1.48502 * 109.47300 * 269.99947 * 3 2 1 5 5 H 1.48499 * 109.47247 * 30.00162 * 3 2 1 6 6 H 1.48497 * 109.47154 * 149.99909 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99653 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00477 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.48599 * 111.00026 * 290.12117 * 12 11 10 14 14 C 1.54500 * 104.61318 * 201.20026 * 13 12 11 15 15 C 1.53805 * 104.89899 * 23.76730 * 14 13 12 16 16 C 1.48660 * 111.00131 * 174.61777 * 12 11 10 17 17 C 1.52568 * 110.21163 * 118.70714 * 15 14 13 18 18 C 1.53151 * 109.17385 * 178.51636 * 17 15 14 19 19 C 1.53045 * 109.24460 * 303.15904 * 18 17 15 20 20 N 1.46836 * 109.60643 * 59.60932 * 19 18 17 21 21 C 1.46954 * 111.15041 * 297.87631 * 20 19 18 22 22 H 0.96994 * 120.00076 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47072 * 60.00140 * 9 7 2 24 24 H 1.08996 * 109.47013 * 300.00024 * 9 7 2 25 25 H 1.08992 * 109.47276 * 59.99972 * 10 9 7 26 26 H 1.09010 * 109.46880 * 299.99974 * 10 9 7 27 27 H 1.08992 * 109.47329 * 59.99644 * 11 10 9 28 28 H 1.09003 * 109.46546 * 299.99782 * 11 10 9 29 29 H 1.09001 * 110.40561 * 82.42453 * 13 12 11 30 30 H 1.08998 * 110.40686 * 319.98526 * 13 12 11 31 31 H 1.09002 * 110.35565 * 264.91439 * 14 13 12 32 32 H 1.09002 * 110.35481 * 142.62237 * 14 13 12 33 33 H 1.08999 * 110.42731 * 39.92174 * 16 12 11 34 34 H 1.08996 * 110.43563 * 277.42788 * 16 12 11 35 35 H 1.09005 * 109.52246 * 298.43103 * 17 15 14 36 36 H 1.09001 * 109.52051 * 58.60236 * 17 15 14 37 37 H 1.08994 * 109.47461 * 183.24547 * 18 17 15 38 38 H 1.08999 * 109.52649 * 63.10665 * 18 17 15 39 39 H 1.09002 * 109.44508 * 299.57455 * 19 18 17 40 40 H 1.09003 * 109.44221 * 179.64323 * 19 18 17 41 41 H 1.00900 * 111.00149 * 61.94076 * 20 19 18 42 42 H 1.08997 * 109.45337 * 180.87814 * 21 20 19 43 43 H 1.08992 * 109.45457 * 300.81632 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.1435 -6.1976 -1.3045 14 6 3.6586 -7.6530 -1.3639 15 6 2.7284 -8.4403 -0.4255 16 6 1.7308 -7.4066 0.1277 17 6 1.9851 -9.5209 -1.2049 18 6 1.0952 -10.3131 -0.2425 19 6 1.9585 -10.8957 0.8789 20 7 2.6282 -9.8069 1.6015 21 6 3.5301 -9.0584 0.7151 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8906 27 1 0.8538 -5.0446 -0.8913 28 1 0.8533 -5.0451 0.8886 29 1 3.9784 -5.4976 -1.3343 30 1 2.4546 -6.0044 -2.1268 31 1 4.6879 -7.7057 -1.0092 32 1 3.5867 -8.0394 -2.3806 33 1 0.8161 -7.4054 -0.4652 34 1 1.5069 -7.6158 1.1737 35 1 1.3673 -9.0561 -1.9733 36 1 2.7048 -10.1930 -1.6724 37 1 0.6059 -11.1230 -0.7834 38 1 0.3413 -9.6518 0.1845 39 1 2.7077 -11.5621 0.4513 40 1 1.3272 -11.4551 1.5694 41 1 1.9551 -9.1927 2.0347 42 1 4.0233 -8.2687 1.2819 43 1 4.2810 -9.7345 0.3063 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710017620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:54 Heat of formation + Delta-G solvation = -19.503660 kcal Electronic energy + Delta-G solvation = -19117.194032 eV Core-core repulsion = 16388.733986 eV Total energy + Delta-G solvation = -2728.460046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45942 -37.18526 -34.23462 -32.65252 -31.74628 -30.58190 -29.23452 -26.81173 -24.73149 -23.97297 -23.15849 -21.75067 -20.92446 -19.81742 -18.79990 -16.36009 -16.13944 -15.92500 -15.35943 -14.84643 -14.55651 -14.41080 -14.23679 -13.59835 -13.31434 -12.96120 -12.63445 -12.33882 -12.27101 -12.02812 -11.67703 -11.49378 -11.45638 -11.39924 -11.15771 -10.93826 -10.75775 -10.59589 -10.52744 -10.38083 -10.31563 -9.61791 -9.29942 -9.03361 -8.49598 -8.32504 -8.22178 -5.97692 -3.99614 3.33555 3.39572 3.43644 4.13189 4.17626 4.38143 4.48881 4.58334 4.69628 4.79281 4.92087 5.04157 5.23458 5.28671 5.32190 5.38109 5.40457 5.52461 5.61167 5.67664 5.68806 5.74281 5.77445 5.85365 5.88507 5.94204 6.02005 6.09081 6.13906 6.21631 6.32966 6.69102 6.79047 6.85359 7.04261 7.20026 7.24561 7.38035 7.70715 7.85667 8.02884 8.46463 9.07598 9.64253 11.13857 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.047940 B = 0.003635 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.922207 B = 7701.418107 C = 7825.543835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.102 4.102 11 C 0.046 3.954 12 N -0.508 5.508 13 C 0.034 3.966 14 C -0.113 4.113 15 C -0.098 4.098 16 C 0.042 3.958 17 C -0.105 4.105 18 C -0.159 4.159 19 C 0.056 3.944 20 N -0.686 5.686 21 C 0.075 3.925 22 H 0.260 0.740 23 H 0.012 0.988 24 H 0.015 0.985 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.342 0.658 42 H 0.084 0.916 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -21.669 -1.652 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.082 4.082 12 N -0.231 5.231 13 C -0.094 4.094 14 C -0.151 4.151 15 C -0.101 4.101 16 C -0.087 4.087 17 C -0.143 4.143 18 C -0.199 4.199 19 C -0.073 4.073 20 N -0.315 5.315 21 C -0.054 4.054 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.161 0.839 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.776 -21.858 -0.916 22.392 hybrid contribution -0.997 1.436 -1.372 2.222 sum 3.779 -20.422 -2.288 20.894 Atomic orbital electron populations 1.69968 1.06069 1.26534 1.51105 1.25033 0.94850 0.99264 0.95405 0.86592 0.79893 0.83465 0.78057 1.20720 1.21240 1.19825 1.21254 0.93053 0.91040 1.50240 0.92679 1.19077 0.94048 0.91476 0.97016 1.21591 0.99074 0.92577 1.00754 1.22450 0.93951 0.91626 1.00165 1.65461 1.25345 1.01797 1.30527 1.23118 0.98895 0.96446 0.90982 1.22338 0.99365 0.94692 0.98729 1.21656 0.96350 0.95123 0.96943 1.23131 0.95210 0.89843 1.00487 1.21581 0.98387 0.96901 0.97458 1.22287 0.98906 1.00198 0.98473 1.22007 0.96661 0.94243 0.94439 1.60780 1.23912 1.14699 1.32095 1.21981 0.94587 0.96880 0.91995 0.93061 0.96922 0.96638 0.92598 0.93609 0.95271 0.91309 0.89909 0.94058 0.90875 0.91572 0.94125 0.90773 0.92015 0.91817 0.91627 0.91814 0.91139 0.90969 0.83921 0.89747 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.18 5.21 -26.73 -0.14 -2.32 16 11 C 0.05 0.82 4.81 -3.83 -0.02 0.80 16 12 N -0.51 -7.70 5.37 -230.06 -1.24 -8.94 16 13 C 0.03 0.46 5.75 -2.10 -0.01 0.45 16 14 C -0.11 -1.22 6.29 -25.53 -0.16 -1.38 16 15 C -0.10 -1.01 0.69 -154.07 -0.11 -1.12 16 16 C 0.04 0.52 4.55 -2.35 -0.01 0.51 16 17 C -0.11 -0.95 4.45 -26.87 -0.12 -1.07 16 18 C -0.16 -1.30 5.87 -26.63 -0.16 -1.46 16 19 C 0.06 0.46 6.54 -3.84 -0.03 0.44 16 20 N -0.69 -6.66 6.85 -114.05 -0.78 -7.44 16 21 C 0.08 0.76 5.10 -4.05 -0.02 0.74 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.96 7.26 -51.92 -0.38 0.59 16 27 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 28 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 29 H 0.08 1.18 7.78 -51.93 -0.40 0.78 16 30 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.07 0.75 7.70 -51.93 -0.40 0.35 16 32 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 33 H 0.04 0.53 7.63 -51.93 -0.40 0.13 16 34 H 0.07 0.90 6.19 -51.93 -0.32 0.58 16 35 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.57 7.50 -51.93 -0.39 0.18 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.34 3.32 7.06 -39.29 -0.28 3.05 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -30.03 325.15 -10.68 -40.72 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.97 Total: -1.78 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.32 Total: -17.77 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.28 Total: -43.04 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.03 -10.68 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710017620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.214 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds