Wall clock time and date at job start Mon Mar 30 2020 04:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47266 * 299.99930 * 3 2 1 6 6 H 1.48501 * 109.47237 * 59.99941 * 3 2 1 7 7 C 1.37884 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99552 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.46851 * 111.00101 * 294.21013 * 10 9 7 12 12 C 1.53032 * 109.52400 * 174.15559 * 11 10 9 13 13 C 1.53125 * 109.27718 * 59.18117 * 12 11 10 14 14 C 1.53120 * 109.15931 * 302.34639 * 13 12 11 15 15 H 1.09001 * 109.53193 * 297.69038 * 14 13 12 16 16 C 1.52993 * 109.50184 * 177.59542 * 14 13 12 17 17 C 1.53099 * 109.52781 * 179.87071 * 16 14 13 18 18 C 1.53034 * 109.29509 * 182.43453 * 17 16 14 19 19 N 1.46847 * 109.51345 * 59.18740 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 19 18 17 21 21 C 1.53039 * 109.52227 * 61.74204 * 20 19 18 22 22 C 1.46848 * 111.00261 * 169.99658 * 10 9 7 23 23 H 0.96998 * 120.00487 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47018 * 60.00148 * 9 7 2 25 25 H 1.08998 * 109.47134 * 299.99801 * 9 7 2 26 26 H 1.08991 * 109.46288 * 294.17567 * 11 10 9 27 27 H 1.09001 * 109.46252 * 54.14488 * 11 10 9 28 28 H 1.09005 * 109.50502 * 179.11779 * 12 11 10 29 29 H 1.08998 * 109.50626 * 299.24131 * 12 11 10 30 30 H 1.08998 * 109.52282 * 182.43655 * 13 12 11 31 31 H 1.08998 * 109.51884 * 62.24813 * 13 12 11 32 32 H 1.09001 * 109.57666 * 300.03589 * 16 14 13 33 33 H 1.09007 * 109.48839 * 62.49095 * 17 16 14 34 34 H 1.09009 * 109.50682 * 302.38881 * 17 16 14 35 35 H 1.09002 * 109.46271 * 299.17460 * 18 17 16 36 36 H 1.08994 * 109.46242 * 179.19760 * 18 17 16 37 37 H 1.00893 * 111.00252 * 62.36001 * 19 18 17 38 38 H 1.08993 * 109.46229 * 181.76227 * 20 19 18 39 39 H 1.09008 * 109.45803 * 301.73838 * 20 19 18 40 40 H 1.08994 * 109.50227 * 60.75933 * 21 20 19 41 41 H 1.09000 * 109.50337 * 180.88158 * 21 20 19 42 42 H 1.09003 * 109.45974 * 65.82560 * 22 10 9 43 43 H 1.08999 * 109.45101 * 305.85499 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9750 -3.6504 -1.2498 12 6 4.0549 -4.7307 -1.1561 13 6 3.3918 -6.0879 -0.9051 14 6 2.5580 -6.0105 0.3768 15 1 3.2105 -5.7988 1.2238 16 6 1.8439 -7.3445 0.6029 17 6 1.0125 -7.2688 1.8863 18 6 0.3492 -8.6244 2.1398 19 7 1.3825 -9.6602 2.2654 20 6 2.1634 -9.7841 1.0278 21 6 2.8806 -8.4629 0.7413 22 6 1.5215 -4.8931 0.2387 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.3070 -3.8758 -2.0811 27 1 3.4447 -2.6807 -1.4143 28 1 4.6156 -4.7668 -2.0902 29 1 4.7314 -4.4985 -0.3336 30 1 4.1597 -6.8535 -0.7946 31 1 2.7449 -6.3382 -1.7459 32 1 1.1899 -7.5566 -0.2429 33 1 0.2447 -6.5026 1.7775 34 1 1.6610 -7.0182 2.7259 35 1 -0.3097 -8.8679 1.3063 36 1 -0.2321 -8.5778 3.0606 37 1 1.9832 -9.4778 3.0552 38 1 2.8995 -10.5799 1.1411 39 1 1.4959 -10.0220 0.1995 40 1 3.5584 -8.2311 1.5628 41 1 3.4476 -8.5502 -0.1856 42 1 0.8602 -5.1127 -0.5996 43 1 0.9356 -4.8257 1.1554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710263237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:27 Heat of formation + Delta-G solvation = -44.571368 kcal Electronic energy + Delta-G solvation = -19473.710196 eV Core-core repulsion = 16744.163133 eV Total energy + Delta-G solvation = -2729.547064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78555 -38.94378 -35.76415 -34.30867 -33.13538 -31.72783 -30.16368 -28.84546 -25.76585 -24.98220 -23.95862 -22.80232 -22.28432 -20.97679 -20.56869 -18.49067 -17.17365 -16.86995 -16.26310 -15.79611 -15.53084 -15.42777 -15.12669 -15.03761 -14.68176 -14.51443 -14.13256 -13.76613 -13.60711 -13.16114 -13.07136 -12.81271 -12.75567 -12.61879 -12.47744 -12.12364 -12.09153 -11.90953 -11.62991 -11.56990 -11.49568 -11.39058 -10.97388 -10.71056 -10.65039 -9.24353 -9.03170 -8.23722 -6.34504 1.38653 1.39407 1.53338 2.37859 3.08216 3.22861 3.46168 3.67598 3.77588 3.91878 4.11639 4.17799 4.23925 4.24855 4.40968 4.45803 4.50908 4.54025 4.62292 4.68011 4.78432 4.87908 4.92279 4.93439 5.01743 5.03228 5.09240 5.10433 5.15375 5.18208 5.19992 5.23608 5.30353 5.41665 5.43602 5.58863 5.63884 6.02688 6.12663 6.34204 6.53031 6.64817 6.82312 7.35641 8.87910 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035810 B = 0.004626 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.722133 B = 6051.709154 C = 6598.632833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.543 5.543 11 C 0.063 3.937 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.066 4.066 15 H 0.067 0.933 16 C -0.073 4.073 17 C -0.152 4.152 18 C 0.062 3.938 19 N -0.692 5.692 20 C 0.058 3.942 21 C -0.143 4.143 22 C 0.063 3.937 23 H 0.265 0.735 24 H -0.044 1.044 25 H 0.000 1.000 26 H 0.007 0.993 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.345 0.655 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.008 0.992 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -18.538 1.001 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.147 4.147 13 C -0.144 4.144 14 C -0.085 4.085 15 H 0.085 0.915 16 C -0.092 4.092 17 C -0.191 4.191 18 C -0.068 4.068 19 N -0.320 5.320 20 C -0.071 4.071 21 C -0.182 4.182 22 C -0.066 4.066 23 H 0.074 0.926 24 H -0.026 1.026 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.026 0.974 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.262 -18.889 1.228 19.937 hybrid contribution -0.375 2.170 -0.659 2.299 sum 5.887 -16.718 0.569 17.734 Atomic orbital electron populations 1.70098 1.07837 1.27917 1.51803 1.25959 0.95764 1.03343 0.94678 0.85293 0.78948 0.78319 0.77819 1.18641 1.20280 1.20252 1.21484 0.93585 0.91011 1.50056 0.91896 1.19352 0.90165 0.89361 0.92963 1.61965 1.26890 1.02902 1.35018 1.21981 0.95608 0.99705 0.89246 1.21585 0.96810 0.93984 1.02283 1.21632 0.99217 0.96946 0.96640 1.21128 0.95911 0.92816 0.98633 0.91465 1.21101 0.96806 0.93812 0.97466 1.22319 0.99764 0.99212 0.97853 1.21961 0.94446 0.88111 1.02252 1.60699 1.17593 1.47518 1.06212 1.22052 0.96561 0.96140 0.92375 1.22279 0.97788 0.95230 1.02940 1.22151 0.95704 0.89938 0.98768 0.92631 1.02646 0.98166 0.97452 0.92335 0.89993 0.91740 0.89282 0.92631 0.91949 0.92760 0.92085 0.91421 0.90285 0.83695 0.89402 0.91399 0.91793 0.90248 0.97354 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.52 -30.65 8.43 25.60 0.22 -30.43 16 8 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 9 C 0.21 11.68 4.72 85.56 0.40 12.08 16 10 N -0.54 -24.72 4.65 -900.95 -4.19 -28.90 16 11 C 0.06 2.54 5.29 86.32 0.46 3.00 16 12 C -0.11 -3.22 6.09 30.65 0.19 -3.03 16 13 C -0.11 -2.68 4.86 30.68 0.15 -2.54 16 14 C -0.07 -1.84 1.94 -10.75 -0.02 -1.86 16 15 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.07 -1.61 1.84 -10.72 -0.02 -1.63 16 17 C -0.15 -3.41 4.94 30.64 0.15 -3.26 16 18 C 0.06 1.18 6.56 86.32 0.57 1.75 16 19 N -0.69 -11.94 6.87 -513.99 -3.53 -15.47 16 20 C 0.06 0.91 6.55 86.32 0.57 1.47 16 21 C -0.14 -2.42 4.94 30.65 0.15 -2.27 16 22 C 0.06 2.36 4.37 86.32 0.38 2.74 16 23 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 24 H -0.04 -2.70 8.12 -2.39 -0.02 -2.72 16 25 H 0.00 0.01 7.99 -2.39 -0.02 0.00 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.06 2.60 6.70 -2.39 -0.02 2.58 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.09 1.74 6.64 -2.39 -0.02 1.73 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.41 6.60 -2.38 -0.02 1.40 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.35 5.30 8.86 -89.70 -0.79 4.51 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.21 6.64 -2.39 -0.02 1.20 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 43 H 0.06 2.22 6.42 -2.39 -0.02 2.21 16 Total: -1.00 -65.46 320.91 -1.59 -67.05 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.17 Total: 11.18 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.65 Total: -23.51 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -7.43 Total: -101.77 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.46 -1.59 -67.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710263237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.479 kcal (2) G-P(sol) polarization free energy of solvation -65.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds