Wall clock time and date at job start Mon Mar 30 2020 03:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00211 * 2 1 4 4 C 1.50697 * 109.47030 * 270.00180 * 3 2 1 5 5 H 1.08001 * 120.00199 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99691 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99805 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99588 * 179.72042 * 6 4 3 9 9 H 1.48496 * 109.47375 * 270.27180 * 8 6 4 10 10 H 1.48498 * 109.47199 * 30.27917 * 8 6 4 11 11 H 1.48506 * 109.46447 * 150.27354 * 8 6 4 12 12 C 1.34786 * 119.99921 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99866 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99703 * 0.02562 * 12 2 1 15 15 N 1.46906 * 109.46935 * 174.39056 * 14 12 2 16 16 C 1.47170 * 110.99475 * 303.67918 * 15 14 12 17 17 C 1.53189 * 108.43224 * 199.74383 * 16 15 14 18 18 C 1.52970 * 109.53085 * 305.53302 * 17 16 15 19 19 H 1.09009 * 115.51410 * 232.29636 * 18 17 16 20 20 C 1.53603 * 115.77977 * 89.42927 * 18 17 16 21 21 C 1.52356 * 59.74985 * 249.47991 * 20 18 17 22 22 H 1.08999 * 115.76725 * 253.07065 * 21 20 18 23 23 C 1.46732 * 111.00221 * 66.78055 * 15 14 12 24 24 H 1.08999 * 109.46878 * 90.00033 * 1 2 3 25 25 H 1.09003 * 109.47012 * 209.99788 * 1 2 3 26 26 H 1.08998 * 109.47087 * 330.00122 * 1 2 3 27 27 H 1.09001 * 109.47158 * 149.99766 * 3 2 1 28 28 H 1.09006 * 109.46704 * 30.00163 * 3 2 1 29 29 H 0.96992 * 120.00253 * 359.72966 * 7 6 4 30 30 H 1.09005 * 109.46995 * 294.38406 * 14 12 2 31 31 H 1.08997 * 109.47918 * 54.38501 * 14 12 2 32 32 H 1.08995 * 109.62284 * 319.32331 * 16 15 14 33 33 H 1.09008 * 109.61412 * 79.86668 * 16 15 14 34 34 H 1.09001 * 109.15150 * 185.72794 * 17 16 15 35 35 H 1.09000 * 109.84594 * 65.76528 * 17 16 15 36 36 H 1.08991 * 117.52790 * 142.05721 * 20 18 17 37 37 H 1.09007 * 117.51859 * 356.89678 * 20 18 17 38 38 H 1.09008 * 109.30416 * 300.47472 * 23 15 14 39 39 H 1.08998 * 109.30447 * 59.86162 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6730 8 14 3.4451 3.4127 -3.4339 9 1 4.7390 2.8497 -3.8964 10 1 2.3500 2.9189 -4.3068 11 1 3.4991 4.8954 -3.4984 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1673 0.0001 14 6 1.3854 -2.4723 0.0005 15 7 2.3343 -3.5857 -0.1342 16 6 3.1566 -3.4339 -1.3453 17 6 3.7474 -4.8010 -1.7040 18 6 4.4968 -5.3670 -0.4966 19 1 5.5219 -5.6854 -0.6871 20 6 3.6600 -6.2181 0.4702 21 6 4.1707 -4.8482 0.8988 22 1 4.9898 -4.8515 1.6179 23 6 3.1898 -3.6941 1.0529 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1383 0.5139 28 1 1.6084 2.0283 0.5139 29 1 3.3889 3.3396 0.2414 30 1 0.8359 -2.5746 0.9364 31 1 0.6857 -2.4880 -0.8351 32 1 2.5357 -3.0776 -2.1671 33 1 3.9603 -2.7224 -1.1551 34 1 4.4392 -4.6839 -2.5381 35 1 2.9488 -5.4860 -1.9891 36 1 4.1357 -7.0938 0.9115 37 1 2.5944 -6.3159 0.2620 38 1 3.7445 -2.7648 1.1835 39 1 2.5674 -3.8651 1.9312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711030729.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:04 Heat of formation + Delta-G solvation = -25.705186 kcal Electronic energy + Delta-G solvation = -19365.910547 eV Core-core repulsion = 16501.348488 eV Total energy + Delta-G solvation = -2864.562059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51329 -39.80182 -36.98882 -35.75957 -34.98483 -32.24204 -30.31313 -28.70662 -27.18768 -25.90706 -24.87719 -23.72648 -22.19784 -20.47957 -19.52134 -19.08419 -17.90476 -17.57712 -16.94453 -16.55989 -16.04019 -15.74832 -15.52455 -15.06453 -14.84634 -14.28595 -14.13240 -13.72399 -13.60871 -13.42313 -13.28605 -13.27426 -12.93253 -12.68407 -12.52977 -12.20691 -12.10401 -11.97341 -11.54360 -11.26559 -11.21354 -10.81861 -10.66070 -10.58134 -9.48000 -9.20072 -8.73052 -6.49400 1.46016 1.55294 1.69165 1.73528 2.28340 2.50524 2.76746 2.95845 3.05960 3.68721 3.72003 3.90349 4.02761 4.13814 4.28771 4.35060 4.38324 4.49011 4.51228 4.59963 4.62151 4.69025 4.78735 4.85793 4.88665 4.91223 5.01169 5.05604 5.09701 5.15244 5.32204 5.41760 5.52931 5.78034 5.88809 5.96194 6.10257 6.40593 6.65057 7.25090 7.37989 8.61287 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.005636 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.128269 B = 4966.638064 C = 5392.853839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.246 3.754 4 C -0.614 4.614 5 H 0.043 0.957 6 C -0.032 4.032 7 N -0.932 5.932 8 Si 1.121 2.879 9 H -0.281 1.281 10 H -0.266 1.266 11 H -0.275 1.275 12 C 0.463 3.537 13 O -0.587 6.587 14 C 0.045 3.955 15 N -0.497 5.497 16 C 0.041 3.959 17 C -0.076 4.076 18 C -0.159 4.159 19 H 0.107 0.893 20 C -0.146 4.146 21 C -0.157 4.157 22 H 0.103 0.897 23 C 0.070 3.930 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.068 0.932 27 H -0.011 1.011 28 H 0.016 0.984 29 H 0.255 0.745 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.031 0.969 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -18.192 1.073 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.340 5.340 3 C 0.123 3.877 4 C -0.653 4.653 5 H 0.062 0.938 6 C -0.230 4.230 7 N -0.569 5.569 8 Si 0.941 3.059 9 H -0.208 1.208 10 H -0.191 1.191 11 H -0.200 1.200 12 C 0.251 3.749 13 O -0.468 6.468 14 C -0.087 4.087 15 N -0.219 5.219 16 C -0.087 4.087 17 C -0.113 4.113 18 C -0.177 4.177 19 H 0.125 0.875 20 C -0.183 4.183 21 C -0.176 4.176 22 H 0.121 0.879 23 C -0.058 4.058 24 H 0.076 0.924 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.007 0.993 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.580 -17.466 0.133 18.336 hybrid contribution 0.149 0.283 1.318 1.357 sum -5.431 -17.183 1.451 18.079 Atomic orbital electron populations 1.21941 0.77621 1.04170 1.02501 1.48220 1.08474 1.06155 1.71108 1.18855 0.90808 0.81706 0.96310 1.22530 1.40471 1.09436 0.92845 0.93847 1.27374 0.92634 0.93613 1.09380 1.70898 1.45551 1.40469 0.99965 0.82898 0.77102 0.76425 0.69429 1.20754 1.19086 1.19959 1.22810 0.88536 0.87500 0.76043 1.90598 1.16416 1.87661 1.52129 1.22527 0.95725 0.83721 1.06723 1.62857 1.18016 1.37860 1.03176 1.22313 0.96623 0.97698 0.92030 1.21120 0.99158 0.94898 0.96155 1.22336 0.99958 1.04641 0.90771 0.87531 1.23077 1.00353 0.92787 1.02056 1.21922 1.01305 0.95810 0.98544 0.87922 1.21554 0.94593 0.96716 0.92967 0.92430 0.87641 0.91328 0.99297 0.96606 0.93614 0.85136 0.85883 0.91906 0.95089 0.91092 0.89843 0.87641 0.88105 0.95113 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.18 127.77 1.30 3.62 16 2 N -0.61 -25.69 2.86 -851.12 -2.43 -28.12 16 3 C 0.25 13.34 4.52 85.63 0.39 13.73 16 4 C -0.61 -36.23 9.39 25.60 0.24 -35.99 16 5 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 6 C -0.03 -1.89 5.46 84.66 0.46 -1.43 16 7 N -0.93 -58.79 13.65 21.45 0.29 -58.50 16 8 Si 1.12 51.92 29.90 68.60 2.05 53.97 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.46 18.87 7.05 87.65 0.62 19.49 16 13 O -0.59 -29.71 11.32 -3.03 -0.03 -29.74 16 14 C 0.04 1.23 4.26 85.55 0.36 1.59 16 15 N -0.50 -14.22 4.66 -901.64 -4.20 -18.43 16 16 C 0.04 1.32 4.69 86.31 0.40 1.73 16 17 C -0.08 -1.88 6.09 30.65 0.19 -1.69 16 18 C -0.16 -3.75 6.28 -10.80 -0.07 -3.82 16 19 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 20 C -0.15 -2.90 9.76 30.58 0.30 -2.60 16 21 C -0.16 -3.97 6.08 -11.45 -0.07 -4.04 16 22 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 23 C 0.07 2.05 5.14 86.08 0.44 2.49 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.11 2.07 6.60 -2.39 -0.02 2.05 16 26 H 0.07 1.97 7.89 -2.39 -0.02 1.95 16 27 H -0.01 -0.68 7.29 -2.39 -0.02 -0.70 16 28 H 0.02 0.87 7.76 -2.38 -0.02 0.85 16 29 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 30 H 0.13 2.77 7.65 -2.38 -0.02 2.75 16 31 H 0.12 2.87 7.94 -2.39 -0.02 2.85 16 32 H 0.06 2.00 7.95 -2.39 -0.02 1.98 16 33 H 0.03 1.29 5.91 -2.38 -0.01 1.27 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.03 1.18 5.72 -2.38 -0.01 1.17 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.36 307.39 1.36 -74.00 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.12 Total: 13.75 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.57 Total: -6.92 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -6.34 Total: -105.04 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.03 Total: -29.74 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Total: -75.36 1.36 -74.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711030729.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.291 kcal (2) G-P(sol) polarization free energy of solvation -75.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds