Wall clock time and date at job start Mon Mar 30 2020 03:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00624 * 2 1 4 4 C 1.50695 * 109.47274 * 270.00162 * 3 2 1 5 5 H 1.08001 * 119.99813 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00141 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99988 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47105 * 89.99982 * 8 6 4 10 10 H 1.48496 * 109.47329 * 210.00462 * 8 6 4 11 11 H 1.48506 * 109.47032 * 330.00214 * 8 6 4 12 12 C 1.34782 * 119.99888 * 179.97438 * 2 1 3 13 13 O 1.21274 * 120.00236 * 184.58299 * 12 2 1 14 14 C 1.50706 * 119.99823 * 4.58262 * 12 2 1 15 15 C 1.51188 * 111.60023 * 288.65249 * 14 12 2 16 16 C 1.55700 * 104.57663 * 276.26797 * 15 14 12 17 17 C 1.56285 * 105.93537 * 352.74625 * 16 15 14 18 18 C 1.50569 * 101.74596 * 335.69696 * 17 16 15 19 19 H 1.08994 * 108.26231 * 292.90322 * 18 17 16 20 20 N 1.43192 * 127.91008 * 161.00096 * 18 17 16 21 21 C 1.49696 * 105.69440 * 208.70134 * 20 18 17 22 22 C 1.52071 * 110.88887 * 68.63491 * 14 12 2 23 23 H 1.08996 * 109.46980 * 264.80177 * 1 2 3 24 24 H 1.09007 * 109.46430 * 24.79880 * 1 2 3 25 25 H 1.08992 * 109.47362 * 144.79717 * 1 2 3 26 26 H 1.09007 * 109.46959 * 29.99663 * 3 2 1 27 27 H 1.09001 * 109.47363 * 149.99685 * 3 2 1 28 28 H 0.96999 * 120.00347 * 179.97438 * 7 6 4 29 29 H 1.09003 * 110.41164 * 35.04261 * 15 14 12 30 30 H 1.08991 * 110.41057 * 157.48861 * 15 14 12 31 31 H 1.09001 * 110.15819 * 233.62712 * 16 15 14 32 32 H 1.09004 * 110.22117 * 111.89690 * 16 15 14 33 33 H 1.09007 * 110.96858 * 217.58692 * 17 16 15 34 34 H 1.08994 * 110.97431 * 93.81192 * 17 16 15 35 35 H 1.00900 * 111.00098 * 329.13874 * 20 18 17 36 36 H 1.09000 * 110.05416 * 249.33407 * 21 20 18 37 37 H 1.08994 * 110.05434 * 127.83910 * 21 20 18 38 38 H 1.08997 * 111.14275 * 191.33733 * 22 14 12 39 39 H 1.09008 * 111.14308 * 315.53794 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2416 6 6 3.1272 2.8773 -1.6727 7 7 3.3468 3.2567 -2.9126 8 14 3.7343 3.9284 -0.2529 9 1 5.1073 3.5064 0.1237 10 1 3.7503 5.3551 -0.6647 11 1 2.8277 3.7594 0.9111 12 6 2.1389 -1.1673 0.0005 13 8 3.3487 -1.1690 0.0844 14 6 1.3889 -2.4703 -0.1032 15 6 0.6311 -2.7790 1.1681 16 6 1.6840 -3.4490 2.0991 17 6 2.9614 -3.6562 1.2229 18 6 2.3784 -3.6941 -0.1648 19 1 1.7721 -4.5952 -0.2562 20 7 3.0561 -3.4907 -1.4097 21 6 2.0275 -2.9353 -2.3448 22 6 0.7631 -2.6277 -1.4802 23 1 -0.3633 -0.0931 1.0234 24 1 -0.3632 0.9330 -0.4311 25 1 -0.3633 -0.8396 -0.5924 26 1 1.6085 2.0284 0.5138 27 1 3.1500 1.1382 0.5139 28 1 3.8238 4.0825 -3.0899 29 1 0.2546 -1.8607 1.6188 30 1 -0.1890 -3.4674 0.9642 31 1 1.3129 -4.4100 2.4554 32 1 1.9092 -2.7974 2.9434 33 1 3.4523 -4.5988 1.4657 34 1 3.6506 -2.8192 1.3338 35 1 3.8286 -2.8509 -1.3006 36 1 1.7854 -3.6697 -3.1130 37 1 2.3971 -2.0194 -2.8057 38 1 0.0610 -3.4611 -1.5000 39 1 0.2825 -1.7036 -1.8016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711258342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:03 Heat of formation + Delta-G solvation = -13.408152 kcal Electronic energy + Delta-G solvation = -20264.075032 eV Core-core repulsion = 17400.046212 eV Total energy + Delta-G solvation = -2864.028820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29944 -37.57643 -35.06124 -34.52169 -32.65693 -30.93621 -28.41890 -26.95301 -26.68297 -25.94377 -23.17417 -21.32809 -20.82012 -20.04642 -18.12353 -16.99572 -16.24415 -15.74579 -15.55004 -15.19294 -14.69823 -14.33279 -13.89932 -13.44625 -13.11417 -12.92437 -12.69153 -12.40938 -12.22324 -12.04499 -11.76079 -11.53014 -11.34993 -11.14603 -11.06683 -10.93707 -10.56306 -10.52652 -10.32810 -10.14385 -10.10705 -9.57652 -8.89826 -8.63101 -8.17405 -7.72659 -6.13166 -4.12347 3.25934 3.29553 3.32032 3.33959 3.70220 4.00833 4.35748 4.71573 4.78174 4.91349 5.07171 5.18026 5.23385 5.29937 5.38364 5.47595 5.53651 5.58663 5.74559 5.79374 5.81899 5.93569 5.99768 6.04788 6.07115 6.17769 6.20501 6.27070 6.36054 6.56607 6.66614 6.91235 7.12838 7.29898 7.56305 7.78056 8.21600 8.42316 8.87296 8.94261 9.47191 11.00019 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.007380 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.636087 B = 3793.373566 C = 3981.675018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.215 3.785 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.532 3.468 13 O -0.542 6.542 14 C -0.147 4.147 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.121 4.121 18 C 0.095 3.905 19 H 0.072 0.928 20 N -0.660 5.660 21 C 0.043 3.957 22 C -0.126 4.126 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.352 0.648 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.717 -12.219 7.639 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.319 3.681 13 O -0.420 6.420 14 C -0.152 4.152 15 C -0.139 4.139 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.017 4.017 19 H 0.090 0.910 20 N -0.289 5.289 21 C -0.086 4.086 22 C -0.164 4.164 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.991 -12.734 7.318 16.266 hybrid contribution 0.012 1.715 0.833 1.906 sum -6.979 -11.019 8.150 15.381 Atomic orbital electron populations 1.21890 0.81172 1.03429 1.00323 1.47753 1.06196 1.06974 1.71378 1.19681 0.92504 0.80050 0.98371 1.21296 1.37100 1.07249 0.91154 0.90856 1.24851 0.95198 0.97328 0.95564 1.69889 1.41345 1.23572 1.18637 0.86848 0.80123 0.79791 0.82912 1.19891 1.21028 1.19138 1.19866 0.87528 0.84412 0.76335 1.90564 1.14055 1.86915 1.50492 1.22612 1.00237 0.96229 0.96147 1.21678 0.97529 1.00962 0.93781 1.22843 0.94567 1.00222 0.98039 1.21996 0.97999 1.03067 0.92837 1.21848 0.94015 0.95223 0.90625 0.90969 1.61781 1.09921 1.49096 1.08112 1.23537 0.90091 0.99163 0.95807 1.22559 0.98077 1.02460 0.93319 0.93729 0.90623 0.91416 0.95377 0.94519 0.92517 0.91143 0.90833 0.91599 0.91657 0.91550 0.88872 0.82888 0.90552 0.91439 0.90398 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 9.02 59.85 0.54 1.72 16 2 N -0.59 -12.06 2.86 -182.96 -0.52 -12.58 16 3 C 0.21 5.22 4.24 -5.20 -0.02 5.20 16 4 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 5 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 8 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 C 0.53 10.52 5.40 -10.98 -0.06 10.46 16 13 O -0.54 -12.55 12.18 5.56 0.07 -12.48 16 14 C -0.15 -2.21 0.21 -154.59 -0.03 -2.24 16 15 C -0.10 -1.24 5.72 -26.21 -0.15 -1.39 16 16 C -0.12 -1.41 6.87 -23.53 -0.16 -1.57 16 17 C -0.12 -1.71 6.38 -26.18 -0.17 -1.88 16 18 C 0.10 1.42 2.75 -68.44 -0.19 1.24 16 19 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 20 N -0.66 -10.98 7.27 -103.88 -0.75 -11.74 16 21 C 0.04 0.67 7.21 -0.53 0.00 0.67 16 22 C -0.13 -1.76 5.56 -25.47 -0.14 -1.90 16 23 H 0.04 0.59 7.07 -51.93 -0.37 0.22 16 24 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 25 H 0.07 0.92 4.49 -51.93 -0.23 0.69 16 26 H 0.03 0.66 7.13 -51.92 -0.37 0.29 16 27 H 0.04 0.96 6.79 -51.93 -0.35 0.60 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.07 0.87 5.96 -51.93 -0.31 0.57 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.09 1.60 6.04 -51.93 -0.31 1.29 16 35 H 0.35 6.70 7.20 -39.29 -0.28 6.42 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.22 5.87 -51.92 -0.30 0.91 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -31.78 293.19 -7.43 -39.21 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.92 Total: 6.01 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.83 Total: -3.06 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.50 Total: -50.97 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.78 -7.43 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711258342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.802 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds