Wall clock time and date at job start Mon Mar 30 2020 04:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 11 15 15 C 1.54991 * 113.19645 * 61.45615 * 14 13 12 16 16 C 1.54066 * 104.76007 * 146.47708 * 15 14 13 17 17 N 1.48237 * 106.69970 * 1.00438 * 16 15 14 18 18 C 1.48808 * 105.17539 * 332.52325 * 17 16 15 19 19 C 1.47683 * 108.91015 * 88.17260 * 17 16 15 20 20 C 1.52989 * 109.28377 * 312.91958 * 19 17 16 21 21 C 1.54007 * 113.03325 * 299.52443 * 14 13 12 22 22 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 24 24 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 25 25 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 26 26 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.00902 * 111.00582 * 303.95797 * 13 12 11 32 32 H 1.09002 * 110.37980 * 265.29214 * 15 14 13 33 33 H 1.08999 * 110.38074 * 27.65601 * 15 14 13 34 34 H 1.08994 * 110.01211 * 120.32103 * 16 15 14 35 35 H 1.09006 * 110.00977 * 241.65279 * 16 15 14 36 36 H 1.08993 * 110.93218 * 284.55328 * 18 17 16 37 37 H 1.09002 * 110.93118 * 160.89117 * 18 17 16 38 38 H 1.09004 * 109.49820 * 72.86076 * 19 17 16 39 39 H 1.08999 * 109.49798 * 192.97437 * 19 17 16 40 40 H 1.09002 * 109.36711 * 64.97047 * 20 19 17 41 41 H 1.09001 * 109.36442 * 184.59472 * 20 19 17 42 42 H 1.09009 * 109.63306 * 291.83422 * 21 14 13 43 43 H 1.08998 * 109.63518 * 52.42890 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5306 -4.0789 0.0033 14 6 8.0571 -5.4504 0.0044 15 6 7.6409 -6.2651 -1.2466 16 6 8.8376 -7.1944 -1.5259 17 7 9.8432 -6.9225 -0.4712 18 6 9.6073 -5.5113 -0.0625 19 6 9.5636 -7.7892 0.6914 20 6 8.0709 -7.7265 1.0210 21 6 7.6206 -6.2624 1.2381 22 1 -0.4851 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1501 -0.8893 26 1 3.6579 -3.1505 0.8907 27 1 5.9142 -2.1229 0.8927 28 1 5.9156 -2.1222 -0.8872 29 1 5.6990 -4.5929 -0.8875 30 1 5.6976 -4.5927 0.8925 31 1 7.8926 -3.5529 -0.7780 32 1 6.7460 -6.8512 -1.0375 33 1 7.4710 -5.6001 -2.0934 34 1 8.5200 -8.2359 -1.4790 35 1 9.2578 -6.9766 -2.5078 36 1 9.9923 -4.8194 -0.8116 37 1 10.0475 -5.3099 0.9141 38 1 9.8412 -8.8164 0.4546 39 1 10.1406 -7.4443 1.5494 40 1 7.5004 -8.1529 0.1959 41 1 7.8765 -8.3003 1.9272 42 1 8.0960 -5.8562 2.1309 43 1 6.5367 -6.2148 1.3431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714910020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:48 Heat of formation + Delta-G solvation = -9.200580 kcal Electronic energy + Delta-G solvation = -18921.041873 eV Core-core repulsion = 16193.028602 eV Total energy + Delta-G solvation = -2728.013271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.18104 -36.48659 -34.21189 -32.35378 -32.28237 -30.54146 -29.54021 -27.78812 -24.94378 -23.96473 -23.02970 -21.35975 -20.51668 -20.06078 -19.14910 -16.73667 -16.55909 -16.24569 -15.60794 -14.93194 -14.71989 -14.17365 -13.92230 -13.47295 -13.19599 -13.02305 -12.96778 -12.74788 -12.55826 -12.01778 -11.93795 -11.75890 -11.64804 -11.26739 -11.16623 -10.96576 -10.89915 -10.77837 -10.63558 -10.53282 -9.87110 -9.67574 -9.49894 -9.14454 -8.76476 -8.51707 -8.46587 -6.02274 -3.99934 3.32407 3.39649 3.44425 3.69039 3.90817 4.37315 4.47533 4.50725 4.59119 4.75485 4.78173 4.84122 5.09180 5.19933 5.23087 5.28409 5.31708 5.35100 5.45056 5.53060 5.55468 5.59873 5.68426 5.73950 5.77474 5.85531 5.92523 6.00311 6.05619 6.14670 6.37037 6.44998 6.62680 6.66181 6.76791 6.90248 7.07829 7.31973 7.35478 7.48368 7.82898 8.56874 9.02860 9.60714 11.11366 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.050139 B = 0.003413 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.314765 B = 8200.823454 C = 8358.596420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.667 5.667 14 C 0.082 3.918 15 C -0.179 4.179 16 C 0.032 3.968 17 N -0.496 5.496 18 C 0.042 3.958 19 C 0.034 3.966 20 C -0.156 4.156 21 C -0.106 4.106 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.342 0.658 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.403 -15.148 -0.277 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.070 4.070 13 N -0.297 5.297 14 C -0.012 4.012 15 C -0.220 4.220 16 C -0.097 4.097 17 N -0.217 5.217 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.196 4.196 21 C -0.144 4.144 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.905 -15.068 0.213 25.770 hybrid contribution -0.919 0.753 -0.683 1.370 sum 19.986 -14.315 -0.470 24.588 Atomic orbital electron populations 1.69922 1.06324 1.26844 1.51426 1.25055 0.94742 0.99238 0.94618 0.86754 0.80397 0.83539 0.78465 1.20355 1.21421 1.18946 1.21192 0.89708 0.94391 1.50527 0.91166 1.19567 0.96938 0.92458 0.96148 1.21407 0.91799 0.99805 1.00869 1.21674 0.97516 0.94528 1.01922 1.22078 0.86055 0.98418 1.00434 1.60399 1.08616 1.11053 1.49585 1.22754 0.95700 0.88590 0.94143 1.23599 0.99367 0.99739 0.99264 1.23002 0.90829 0.99332 0.96528 1.66471 1.44335 1.03344 1.07572 1.23492 0.92961 0.90551 1.01730 1.22588 0.94636 0.98255 0.94030 1.22542 0.97564 0.97098 1.02351 1.22093 1.01518 0.93542 0.97263 0.92794 0.96634 0.97218 0.93124 0.92877 0.91644 0.92758 0.95262 0.91023 0.83938 0.91033 0.91467 0.91061 0.90340 0.89954 0.89749 0.90489 0.90562 0.91398 0.91292 0.91110 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.00 5.15 -26.74 -0.14 -2.14 16 11 C -0.12 -1.89 5.47 -26.74 -0.15 -2.04 16 12 C 0.06 0.78 5.17 -3.83 -0.02 0.76 16 13 N -0.67 -7.74 6.40 -97.16 -0.62 -8.36 16 14 C 0.08 0.82 1.03 -128.81 -0.13 0.69 16 15 C -0.18 -1.71 4.53 -25.12 -0.11 -1.83 16 16 C 0.03 0.28 6.20 -2.53 -0.02 0.26 16 17 N -0.50 -4.57 6.07 -228.98 -1.39 -5.96 16 18 C 0.04 0.39 6.19 -1.56 -0.01 0.38 16 19 C 0.03 0.27 5.86 -3.40 -0.02 0.25 16 20 C -0.16 -1.27 5.53 -25.83 -0.14 -1.42 16 21 C -0.11 -1.05 5.06 -25.30 -0.13 -1.18 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.39 7.33 -51.93 -0.38 0.01 16 30 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 31 H 0.34 3.72 8.79 -39.29 -0.35 3.38 16 32 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.57 6.93 -51.93 -0.36 0.21 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 40 H 0.07 0.57 5.37 -51.93 -0.28 0.29 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.72 8.11 -51.92 -0.42 0.30 16 43 H 0.07 0.76 6.45 -51.93 -0.34 0.42 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -30.55 320.35 -10.27 -40.82 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.78 Total: -0.75 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.41 Total: -20.39 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -1.24 Total: -41.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.55 -10.27 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714910020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds