Wall clock time and date at job start Mon Mar 30 2020 04:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.46947 * 110.99811 * 66.04650 * 12 11 10 14 14 C 1.52983 * 109.77859 * 174.66738 * 13 12 11 15 15 C 1.53206 * 109.50404 * 58.60341 * 14 13 12 16 16 C 1.53002 * 108.88608 * 302.58047 * 15 14 13 17 17 H 1.09003 * 109.49191 * 298.48609 * 16 15 14 18 18 C 1.52899 * 110.12665 * 178.04334 * 16 15 14 19 19 N 1.46933 * 109.26246 * 180.75795 * 18 16 15 20 20 C 1.46801 * 111.51017 * 61.34605 * 19 18 16 21 21 C 1.53129 * 109.75850 * 298.83735 * 20 19 18 22 22 C 1.46709 * 111.00095 * 302.21462 * 12 11 10 23 23 H 1.08999 * 109.45356 * 66.34109 * 22 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 30 30 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 31 31 H 1.08998 * 109.41719 * 294.75869 * 13 12 11 32 32 H 1.08997 * 109.42030 * 54.56870 * 13 12 11 33 33 H 1.09001 * 109.46472 * 178.61090 * 14 13 12 34 34 H 1.09000 * 109.46394 * 298.58672 * 14 13 12 35 35 H 1.09003 * 109.57033 * 62.39926 * 15 14 13 36 36 H 1.09001 * 109.57192 * 182.64065 * 15 14 13 37 37 H 1.08997 * 109.50457 * 300.62926 * 18 16 15 38 38 H 1.09005 * 109.49913 * 60.75253 * 18 16 15 39 39 H 1.00899 * 110.94146 * 297.06958 * 19 18 16 40 40 H 1.08997 * 109.42060 * 178.74864 * 20 19 18 41 41 H 1.08997 * 109.37362 * 58.89186 * 20 19 18 42 42 H 1.09010 * 109.54332 * 299.02472 * 21 20 19 43 43 H 1.08997 * 109.54332 * 178.76417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.2004 -6.1413 1.2556 14 6 4.0882 -7.3868 1.2829 15 6 5.0350 -7.3666 0.0786 16 6 4.2038 -7.2877 -1.2036 17 1 3.5669 -8.1691 -1.2790 18 6 5.1233 -7.2170 -2.4231 19 7 4.3068 -7.1236 -3.6411 20 6 3.4789 -5.9113 -3.6425 21 6 2.5189 -5.9387 -2.4498 22 6 3.3316 -6.0294 -1.1570 23 1 3.9686 -5.1494 -1.0674 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.8540 -5.0446 0.8914 30 1 0.8534 -5.0452 -0.8885 31 1 3.8240 -5.2501 1.3263 32 1 2.5117 -6.1685 2.1000 33 1 4.6717 -7.3969 2.2035 34 1 3.4636 -8.2791 1.2391 35 1 5.6896 -6.4974 0.1433 36 1 5.6356 -8.2762 0.0709 37 1 5.7626 -6.3375 -2.3464 38 1 5.7410 -8.1141 -2.4657 39 1 3.7389 -7.9493 -3.7588 40 1 2.9055 -5.8650 -4.5683 41 1 4.1219 -5.0342 -3.5700 42 1 1.8628 -6.8056 -2.5296 43 1 1.9213 -5.0271 -2.4417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715013293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:19 Heat of formation + Delta-G solvation = -22.834894 kcal Electronic energy + Delta-G solvation = -19759.431194 eV Core-core repulsion = 17030.826695 eV Total energy + Delta-G solvation = -2728.604499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22132 -36.77124 -34.80471 -33.14273 -31.09233 -30.66194 -29.66045 -26.53282 -24.56622 -23.62434 -23.13666 -21.30074 -20.77673 -20.40106 -18.96053 -16.37248 -16.03633 -15.40504 -15.10067 -14.95615 -14.53219 -14.45873 -14.12328 -13.60018 -13.32529 -12.72122 -12.65625 -12.25933 -12.21115 -11.94943 -11.77681 -11.61111 -11.24463 -11.05018 -10.87416 -10.85321 -10.74277 -10.64552 -10.54237 -10.45146 -9.89424 -9.60263 -9.42189 -9.19742 -8.38377 -8.35759 -7.83407 -6.00663 -4.03450 3.31706 3.36164 3.38645 4.07758 4.31190 4.44808 4.68440 4.80580 4.83604 5.05462 5.18547 5.29307 5.34566 5.41147 5.43831 5.51425 5.59286 5.68674 5.72130 5.81250 5.84008 5.86945 5.94332 5.99290 6.04242 6.07252 6.16828 6.22328 6.25888 6.28713 6.46819 6.62121 6.80381 6.96962 7.05193 7.30756 7.42259 7.47140 7.65070 7.80158 7.98561 8.42000 9.03119 9.60648 11.10308 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.005277 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.862899 B = 5304.681426 C = 5734.390510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.143 4.143 11 C 0.050 3.950 12 N -0.534 5.534 13 C 0.052 3.948 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.116 4.116 17 H 0.074 0.926 18 C 0.063 3.937 19 N -0.688 5.688 20 C 0.058 3.942 21 C -0.153 4.153 22 C 0.091 3.909 23 H 0.046 0.954 24 H 0.261 0.739 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.338 0.662 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.977 -16.367 -2.440 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.182 4.182 11 C -0.077 4.077 12 N -0.257 5.257 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.136 4.136 17 H 0.092 0.908 18 C -0.067 4.067 19 N -0.315 5.315 20 C -0.072 4.072 21 C -0.192 4.192 22 C -0.018 4.018 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.056 -16.402 -2.863 18.497 hybrid contribution 0.125 1.619 0.887 1.850 sum 8.181 -14.783 -1.976 17.011 Atomic orbital electron populations 1.69948 1.06024 1.26691 1.50787 1.25014 0.94834 0.99179 0.95323 0.86686 0.79632 0.83255 0.78603 1.20259 1.21205 1.20287 1.21208 0.92845 0.91202 1.50674 0.93035 1.19004 0.93830 0.91242 0.97087 1.22208 0.99951 0.95880 1.00142 1.22346 0.94680 0.88419 1.02249 1.62313 1.17475 1.44367 1.01540 1.22063 0.96123 0.96877 0.92576 1.21572 0.97414 0.98669 0.97603 1.21546 0.97561 1.01540 0.94423 1.21943 0.97234 0.98747 0.95689 0.90788 1.22060 0.95460 1.02274 0.86931 1.60622 1.28072 1.05444 1.37353 1.22031 0.94572 0.93301 0.97310 1.22369 0.98950 1.03345 0.94567 1.21519 0.93329 0.96310 0.90631 0.93575 0.92943 0.96683 0.96713 0.93301 0.93575 0.91329 0.90884 0.94409 0.91018 0.91892 0.91557 0.92191 0.92039 0.91061 0.90825 0.84465 0.90575 0.90872 0.91547 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.14 -2.96 4.33 -26.73 -0.12 -3.08 16 11 C 0.05 0.88 4.80 -3.83 -0.02 0.86 16 12 N -0.53 -8.05 4.73 -226.69 -1.07 -9.13 16 13 C 0.05 0.73 5.05 -3.81 -0.02 0.71 16 14 C -0.11 -1.30 6.08 -26.63 -0.16 -1.46 16 15 C -0.11 -1.21 5.34 -26.62 -0.14 -1.35 16 16 C -0.12 -1.32 2.24 -90.58 -0.20 -1.52 16 17 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 18 C 0.06 0.66 5.90 -3.86 -0.02 0.64 16 19 N -0.69 -7.48 6.85 -113.81 -0.78 -8.26 16 20 C 0.06 0.69 6.55 -3.81 -0.02 0.67 16 21 C -0.15 -2.04 4.82 -26.68 -0.13 -2.17 16 22 C 0.09 1.27 1.07 -67.74 -0.07 1.19 16 23 H 0.05 0.75 6.63 -51.93 -0.34 0.41 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.02 6.17 -51.93 -0.32 0.70 16 28 H 0.05 0.97 6.67 -51.93 -0.35 0.63 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 30 H 0.07 1.28 6.46 -51.93 -0.34 0.95 16 31 H 0.04 0.58 6.72 -51.93 -0.35 0.24 16 32 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.34 3.26 8.87 -39.29 -0.35 2.91 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.08 1.21 6.21 -51.93 -0.32 0.89 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -29.65 319.08 -10.61 -40.25 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.82 Total: 0.50 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.46 Total: -18.67 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -1.12 Total: -43.76 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.65 -10.61 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715013293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.417 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds