Wall clock time and date at job start Mon Mar 30 2020 04:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46947 * 110.99552 * 46.17933 * 12 11 10 14 14 C 1.52982 * 109.77214 * 185.33724 * 13 12 11 15 15 C 1.53207 * 109.51413 * 301.40539 * 14 13 12 16 16 C 1.52998 * 108.88834 * 57.40859 * 15 14 13 17 17 H 1.09003 * 109.57274 * 61.57277 * 16 15 14 18 18 C 1.52904 * 110.11179 * 182.06159 * 16 15 14 19 19 N 1.46939 * 109.26854 * 179.26667 * 18 16 15 20 20 C 1.46788 * 111.45146 * 298.54548 * 19 18 16 21 21 C 1.53128 * 109.75505 * 61.20997 * 20 19 18 22 22 C 1.46709 * 111.00551 * 170.00062 * 12 11 10 23 23 H 1.08996 * 109.44363 * 293.54466 * 22 12 11 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.42069 * 305.43286 * 13 12 11 32 32 H 1.09001 * 109.41876 * 65.24425 * 13 12 11 33 33 H 1.09001 * 109.46081 * 181.39276 * 14 13 12 34 34 H 1.09000 * 109.45825 * 61.41835 * 14 13 12 35 35 H 1.08995 * 109.56841 * 297.58574 * 15 14 13 36 36 H 1.09003 * 109.56163 * 177.22741 * 15 14 13 37 37 H 1.09003 * 109.50164 * 59.32925 * 18 16 15 38 38 H 1.09000 * 109.53507 * 299.22613 * 18 16 15 39 39 H 1.00905 * 111.00010 * 62.82601 * 19 18 16 40 40 H 1.08996 * 109.42887 * 301.11870 * 20 19 18 41 41 H 1.09003 * 109.38048 * 181.26695 * 20 19 18 42 42 H 1.09000 * 109.54511 * 181.23455 * 21 20 19 43 43 H 1.09000 * 109.54689 * 60.96144 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.4995 -5.8867 0.9896 14 6 4.5468 -6.9959 0.8743 15 6 3.8784 -8.3562 1.0976 16 6 2.7519 -8.5281 0.0766 17 1 3.1667 -8.5096 -0.9313 18 6 2.0314 -9.8568 0.3075 19 7 0.9435 -9.9948 -0.6706 20 6 -0.0504 -8.9248 -0.5225 21 6 0.6122 -7.5658 -0.7651 22 6 1.7512 -7.3799 0.2390 23 1 1.3480 -7.3919 1.2515 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.9721 -4.9215 0.8075 32 1 3.0707 -5.8959 1.9917 33 1 5.3211 -6.8438 1.6262 34 1 4.9951 -6.9701 -0.1190 35 1 3.4668 -8.3996 2.1060 36 1 4.6138 -9.1501 0.9670 37 1 1.6186 -9.8765 1.3162 38 1 2.7361 -10.6795 0.1865 39 1 1.3052 -10.0246 -1.6121 40 1 -0.4644 -8.9514 0.4854 41 1 -0.8512 -9.0721 -1.2472 42 1 -0.1236 -6.7725 -0.6329 43 1 1.0106 -7.5301 -1.7791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715013297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:28 Heat of formation + Delta-G solvation = -21.640600 kcal Electronic energy + Delta-G solvation = -19387.425602 eV Core-core repulsion = 16658.872891 eV Total energy + Delta-G solvation = -2728.552711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19605 -36.86988 -34.68929 -33.25336 -31.53293 -30.54635 -29.67413 -26.57241 -24.75572 -23.40919 -23.34603 -21.41210 -20.63085 -19.94175 -19.44982 -16.36001 -16.13480 -15.48855 -15.16132 -15.00935 -14.53400 -14.39516 -14.35469 -13.64202 -13.32987 -13.02872 -12.67535 -12.44676 -12.15403 -11.90549 -11.71622 -11.59462 -11.40704 -11.26509 -10.97736 -10.87159 -10.73463 -10.64019 -10.53596 -10.23872 -9.95237 -9.60989 -9.32266 -9.04864 -8.49187 -8.34044 -8.00975 -5.99397 -4.01568 3.32202 3.38236 3.41679 3.98630 4.21125 4.46698 4.59980 4.70679 4.76599 5.00202 5.12720 5.16929 5.29241 5.35985 5.36549 5.42299 5.51304 5.63665 5.65352 5.71080 5.78632 5.81195 5.86603 5.88709 5.94745 6.03946 6.10286 6.19303 6.23785 6.31707 6.39496 6.70390 6.78908 6.84734 7.09649 7.19540 7.42992 7.44620 7.68025 7.82991 8.00697 8.43985 9.05466 9.62418 11.12074 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035496 B = 0.004317 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.630302 B = 6485.050517 C = 7139.196762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.533 5.533 13 C 0.048 3.952 14 C -0.116 4.116 15 C -0.112 4.112 16 C -0.116 4.116 17 H 0.077 0.923 18 C 0.063 3.937 19 N -0.688 5.688 20 C 0.059 3.941 21 C -0.153 4.153 22 C 0.092 3.908 23 H 0.035 0.965 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.341 0.659 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -19.414 0.696 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.257 5.257 13 C -0.079 4.079 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.137 4.137 17 H 0.095 0.905 18 C -0.067 4.067 19 N -0.316 5.316 20 C -0.072 4.072 21 C -0.193 4.193 22 C -0.017 4.017 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.277 -19.776 0.625 20.243 hybrid contribution 0.505 1.933 0.460 2.051 sum 4.782 -17.843 1.086 18.504 Atomic orbital electron populations 1.69966 1.06066 1.26553 1.50984 1.25024 0.94839 0.99241 0.95361 0.86601 0.79840 0.83493 0.78116 1.20643 1.21239 1.19897 1.21244 0.93005 0.91058 1.50410 0.92736 1.19064 0.93997 0.91362 0.97080 1.21793 0.99335 0.93146 1.00669 1.22286 0.94169 0.90528 1.00068 1.62114 1.12796 1.01665 1.49164 1.22200 0.92969 0.99627 0.93130 1.21595 0.97550 0.94140 1.02130 1.21548 0.97284 0.97537 0.98624 1.21946 0.95958 0.95292 1.00461 0.90500 1.22065 0.92434 0.95475 0.96712 1.60621 1.15751 1.46610 1.08578 1.22025 0.94668 0.88106 1.02362 1.22369 0.97937 0.98938 1.00015 1.21550 0.93232 0.89950 0.96948 0.94724 0.93035 0.96855 0.96611 0.92618 0.93222 0.95574 0.91011 0.89366 0.95415 0.91796 0.91321 0.92362 0.91969 0.91171 0.90703 0.84214 0.91138 0.90544 0.90874 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.35 4.42 -26.74 -0.12 -2.47 16 11 C 0.06 1.01 4.38 -3.83 -0.02 0.99 16 12 N -0.53 -8.17 4.67 -226.68 -1.06 -9.22 16 13 C 0.05 0.70 4.84 -3.81 -0.02 0.68 16 14 C -0.12 -1.35 6.08 -26.63 -0.16 -1.51 16 15 C -0.11 -1.14 5.34 -26.62 -0.14 -1.28 16 16 C -0.12 -1.25 2.24 -90.58 -0.20 -1.45 16 17 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 18 C 0.06 0.60 5.89 -3.85 -0.02 0.57 16 19 N -0.69 -6.66 6.85 -113.81 -0.78 -7.44 16 20 C 0.06 0.59 6.55 -3.82 -0.03 0.57 16 21 C -0.15 -1.83 4.93 -26.68 -0.13 -1.97 16 22 C 0.09 1.19 1.66 -67.74 -0.11 1.08 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.03 6.21 -51.93 -0.32 0.70 16 29 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.07 1.29 6.95 -51.93 -0.36 0.93 16 31 H 0.09 1.39 5.84 -51.93 -0.30 1.08 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.34 2.99 8.87 -39.29 -0.35 2.64 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.95 6.75 -51.93 -0.35 0.60 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -29.85 322.41 -10.75 -40.61 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.99 Total: -1.13 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.50 Total: -18.02 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -1.10 Total: -43.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.85 -10.75 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715013297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.966 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds