Wall clock time and date at job start Mon Mar 30 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 H 1.08996 * 109.47238 * 174.23493 * 3 2 1 5 5 C 1.50699 * 109.47060 * 54.23784 * 3 2 1 6 6 H 1.08001 * 120.00286 * 240.00077 * 5 3 2 7 7 C 1.37882 * 120.00432 * 59.99945 * 5 3 2 8 8 N 1.31516 * 119.99650 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00468 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47286 * 119.99776 * 9 7 5 12 12 H 1.48498 * 109.47182 * 240.00013 * 9 7 5 13 13 N 1.46895 * 109.47358 * 294.23959 * 3 2 1 14 14 C 1.46899 * 110.99690 * 274.65661 * 13 3 2 15 15 H 1.09004 * 109.47719 * 35.43676 * 14 13 3 16 16 C 1.53005 * 109.47197 * 275.43624 * 14 13 3 17 17 C 1.50705 * 109.47400 * 155.43807 * 14 13 3 18 18 C 1.35342 * 126.75343 * 205.00101 * 17 14 13 19 19 N 1.35314 * 106.17571 * 179.97438 * 18 17 14 20 20 C 1.46496 * 125.86848 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47303 * 125.00053 * 20 19 18 22 22 N 1.28717 * 108.26351 * 0.02562 * 19 18 17 23 23 N 1.28641 * 110.17723 * 359.72021 * 22 19 18 24 24 H 1.09000 * 109.47506 * 58.77639 * 1 2 3 25 25 H 1.09000 * 109.47215 * 178.77685 * 1 2 3 26 26 H 1.09005 * 109.47229 * 298.77953 * 1 2 3 27 27 H 1.09002 * 109.46592 * 120.00102 * 2 1 3 28 28 H 1.08997 * 109.46836 * 240.00016 * 2 1 3 29 29 H 0.97001 * 120.00295 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99944 * 38.60663 * 13 3 2 31 31 H 1.09009 * 109.46684 * 60.00194 * 16 14 13 32 32 H 1.09003 * 109.47227 * 179.97438 * 16 14 13 33 33 H 1.08992 * 109.47141 * 300.00436 * 16 14 13 34 34 H 1.08002 * 126.91032 * 0.02945 * 18 17 14 35 35 H 1.09000 * 109.46964 * 244.99998 * 20 19 18 36 36 H 1.08999 * 109.47140 * 4.99993 * 20 19 18 37 37 H 1.09001 * 109.46555 * 299.99754 * 21 20 19 38 38 H 1.08999 * 109.47071 * 59.99898 * 21 20 19 39 39 H 1.08995 * 109.47377 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4246 2.1929 1.1529 6 1 0.8172 3.0662 0.9662 7 6 1.6368 1.7646 2.4462 8 7 2.3760 0.7008 2.6736 9 14 0.8734 2.6942 3.8753 10 1 0.0923 3.8455 3.3560 11 1 -0.0257 1.7867 4.6324 12 1 1.9471 3.1899 4.7734 13 7 1.6672 2.0937 -1.2628 14 6 2.6593 1.8177 -2.3104 15 1 3.0447 0.8054 -2.1884 16 6 3.8111 2.8187 -2.1984 17 6 2.0102 1.9483 -3.6642 18 6 2.4030 1.3483 -4.8119 19 7 1.5318 1.7516 -5.7655 20 6 1.5599 1.3572 -7.1761 21 6 0.2057 0.7615 -7.5662 22 7 0.6746 2.5422 -5.2203 23 7 0.9291 2.6759 -3.9665 24 1 -0.3634 0.5327 -0.8788 25 1 -0.3633 -1.0274 -0.0219 26 1 -0.3634 0.4948 0.9008 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.5251 0.3992 3.5834 30 1 0.7437 1.8119 -1.5561 31 1 4.2807 2.7241 -1.2192 32 1 4.5476 2.6136 -2.9754 33 1 3.4259 3.8309 -2.3204 34 1 3.2425 0.6811 -4.9406 35 1 1.7636 2.2318 -7.7938 36 1 2.3418 0.6136 -7.3299 37 1 0.0020 -0.1132 -6.9484 38 1 -0.5763 1.5051 -7.4124 39 1 0.2264 0.4684 -8.6158 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715926530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:41 Heat of formation + Delta-G solvation = 92.304148 kcal Electronic energy + Delta-G solvation = -18943.771514 eV Core-core repulsion = 16116.619475 eV Total energy + Delta-G solvation = -2827.152039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.05651 -37.05564 -35.39539 -33.53469 -31.37663 -30.85897 -29.83627 -28.14830 -25.99364 -24.71367 -23.55894 -22.79063 -21.52133 -20.09753 -18.79935 -17.33596 -16.36068 -16.10901 -15.02713 -14.92949 -14.57945 -14.40950 -13.92445 -13.26209 -12.95955 -12.75817 -12.54962 -12.48259 -12.06012 -11.95857 -11.65257 -11.48213 -11.22828 -10.91702 -10.78239 -10.58015 -10.46233 -10.42096 -9.93070 -9.82342 -9.69914 -9.46039 -8.99285 -8.77958 -8.25347 -7.07058 -5.88926 -3.88733 1.74115 2.39168 2.83968 3.38457 3.46442 3.53275 4.20489 4.51809 4.52762 4.59028 4.75189 5.00591 5.12559 5.22099 5.31823 5.43304 5.58873 5.71030 5.75259 5.99321 6.03551 6.24214 6.41171 6.45574 6.46910 6.58924 6.65526 6.70961 6.87895 6.99322 7.36843 7.38985 7.58953 7.79258 8.01299 8.38702 8.69333 8.71247 8.83017 9.18547 9.74658 11.18504 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.004806 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.144037 B = 5824.258346 C = 5959.523705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.482 4.482 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.670 5.670 14 C 0.167 3.833 15 H 0.050 0.950 16 C -0.130 4.130 17 C -0.004 4.004 18 C -0.060 4.060 19 N -0.298 5.298 20 C 0.114 3.886 21 C -0.167 4.167 22 N -0.095 5.095 23 N -0.243 5.243 24 H 0.030 0.970 25 H 0.020 0.980 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.008 0.992 29 H 0.257 0.743 30 H 0.335 0.665 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -2.719 -18.716 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.106 3.894 4 H 0.053 0.947 5 C -0.521 4.521 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.302 5.302 14 C 0.055 3.945 15 H 0.067 0.933 16 C -0.188 4.188 17 C -0.142 4.142 18 C -0.210 4.210 19 N -0.093 5.093 20 C -0.007 4.007 21 C -0.225 4.225 22 N -0.074 5.074 23 N -0.110 5.110 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.203 0.797 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.679 -1.333 -18.661 18.721 hybrid contribution 0.460 -1.363 0.576 1.550 sum 1.139 -2.695 -18.084 18.320 Atomic orbital electron populations 1.21564 0.97728 0.97856 1.01367 1.22119 0.95049 1.01318 0.99981 1.19282 0.96087 0.88453 0.85604 0.94697 1.21127 1.29980 1.11356 0.89596 0.91863 1.24899 0.95677 0.95211 0.98655 1.69895 1.39631 1.24253 1.20119 0.86535 0.78994 0.79978 0.82509 1.19701 1.21368 1.21300 1.60832 1.03627 1.63129 1.02655 1.19786 0.93229 0.97407 0.84127 0.93258 1.21750 0.96054 0.99682 1.01315 1.22383 0.96010 0.98627 0.97220 1.23320 1.00895 1.07701 0.89131 1.47406 1.19975 1.31595 1.10294 1.21999 1.00884 1.01607 0.76200 1.22075 0.95978 1.02173 1.02300 1.78277 1.14462 1.10917 1.03758 1.75160 1.13826 1.18669 1.03340 0.95138 0.96087 0.91476 0.88955 0.97324 0.93334 0.84521 0.91458 0.93960 0.92180 0.79714 0.88617 0.87974 0.91714 0.90627 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.39 37.16 0.35 -2.51 16 2 C -0.15 -3.46 5.48 -26.73 -0.15 -3.60 16 3 C 0.21 5.33 2.14 -68.87 -0.15 5.18 16 4 H 0.04 0.94 7.08 -51.93 -0.37 0.57 16 5 C -0.48 -13.29 7.35 -34.44 -0.25 -13.54 16 6 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.50 11.38 55.43 0.63 -24.87 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.67 -14.96 5.95 -102.17 -0.61 -15.57 16 14 C 0.17 3.11 2.89 -68.86 -0.20 2.91 16 15 H 0.05 0.91 7.12 -51.93 -0.37 0.54 16 16 C -0.13 -2.24 9.38 37.16 0.35 -1.89 16 17 C 0.00 -0.07 5.94 -82.78 -0.49 -0.56 16 18 C -0.06 -0.78 11.50 -17.05 -0.20 -0.98 16 19 N -0.30 -3.73 3.44 -61.26 -0.21 -3.94 16 20 C 0.11 0.81 7.17 -4.04 -0.03 0.78 16 21 C -0.17 -1.12 10.04 37.16 0.37 -0.75 16 22 N -0.09 -1.57 12.92 60.35 0.78 -0.79 16 23 N -0.24 -4.65 11.97 33.29 0.40 -4.25 16 24 H 0.03 0.65 6.42 -51.93 -0.33 0.31 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 1.64 7.05 -51.93 -0.37 1.27 16 27 H 0.09 2.44 6.25 -51.93 -0.32 2.12 16 28 H 0.01 0.18 7.39 -51.93 -0.38 -0.20 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.34 7.63 5.95 -39.29 -0.23 7.40 16 31 H 0.07 1.25 7.40 -51.92 -0.38 0.86 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -31.62 316.91 -5.85 -37.47 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.11 Total: 3.95 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.49 Total: -13.53 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.99 Total: -49.42 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.62 -5.85 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715926530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.773 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds