Wall clock time and date at job start Mon Mar 30 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 H 1.08996 * 109.47238 * 174.23493 * 3 2 1 5 5 C 1.50699 * 109.47060 * 54.23784 * 3 2 1 6 6 H 1.08001 * 120.00286 * 240.00077 * 5 3 2 7 7 C 1.37882 * 120.00432 * 59.99945 * 5 3 2 8 8 N 1.31516 * 119.99650 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00468 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47286 * 119.99776 * 9 7 5 12 12 H 1.48498 * 109.47182 * 240.00013 * 9 7 5 13 13 N 1.46895 * 109.47358 * 294.23959 * 3 2 1 14 14 C 1.46899 * 110.99690 * 274.65661 * 13 3 2 15 15 H 1.09004 * 109.47719 * 35.43676 * 14 13 3 16 16 C 1.53005 * 109.47197 * 275.43624 * 14 13 3 17 17 C 1.50705 * 109.47400 * 155.43807 * 14 13 3 18 18 C 1.35342 * 126.75343 * 205.00101 * 17 14 13 19 19 N 1.35314 * 106.17571 * 179.97438 * 18 17 14 20 20 C 1.46496 * 125.86848 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47303 * 125.00053 * 20 19 18 22 22 N 1.28717 * 108.26351 * 0.02562 * 19 18 17 23 23 N 1.28641 * 110.17723 * 359.72021 * 22 19 18 24 24 H 1.09000 * 109.47506 * 58.77639 * 1 2 3 25 25 H 1.09000 * 109.47215 * 178.77685 * 1 2 3 26 26 H 1.09005 * 109.47229 * 298.77953 * 1 2 3 27 27 H 1.09002 * 109.46592 * 120.00102 * 2 1 3 28 28 H 1.08997 * 109.46836 * 240.00016 * 2 1 3 29 29 H 0.97001 * 120.00295 * 180.02562 * 8 7 5 30 30 H 1.00903 * 110.99944 * 38.60663 * 13 3 2 31 31 H 1.09009 * 109.46684 * 60.00194 * 16 14 13 32 32 H 1.09003 * 109.47227 * 179.97438 * 16 14 13 33 33 H 1.08992 * 109.47141 * 300.00436 * 16 14 13 34 34 H 1.08002 * 126.91032 * 0.02945 * 18 17 14 35 35 H 1.09000 * 109.46964 * 244.99998 * 20 19 18 36 36 H 1.08999 * 109.47140 * 4.99993 * 20 19 18 37 37 H 1.09001 * 109.46555 * 299.99754 * 21 20 19 38 38 H 1.08999 * 109.47071 * 59.99898 * 21 20 19 39 39 H 1.08995 * 109.47377 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4246 2.1929 1.1529 6 1 0.8172 3.0662 0.9662 7 6 1.6368 1.7646 2.4462 8 7 2.3760 0.7008 2.6736 9 14 0.8734 2.6942 3.8753 10 1 0.0923 3.8455 3.3560 11 1 -0.0257 1.7867 4.6324 12 1 1.9471 3.1899 4.7734 13 7 1.6672 2.0937 -1.2628 14 6 2.6593 1.8177 -2.3104 15 1 3.0447 0.8054 -2.1884 16 6 3.8111 2.8187 -2.1984 17 6 2.0102 1.9483 -3.6642 18 6 2.4030 1.3483 -4.8119 19 7 1.5318 1.7516 -5.7655 20 6 1.5599 1.3572 -7.1761 21 6 0.2057 0.7615 -7.5662 22 7 0.6746 2.5422 -5.2203 23 7 0.9291 2.6759 -3.9665 24 1 -0.3634 0.5327 -0.8788 25 1 -0.3633 -1.0274 -0.0219 26 1 -0.3634 0.4948 0.9008 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.5251 0.3992 3.5834 30 1 0.7437 1.8119 -1.5561 31 1 4.2807 2.7241 -1.2192 32 1 4.5476 2.6136 -2.9754 33 1 3.4259 3.8309 -2.3204 34 1 3.2425 0.6811 -4.9406 35 1 1.7636 2.2318 -7.7938 36 1 2.3418 0.6136 -7.3299 37 1 0.0020 -0.1132 -6.9484 38 1 -0.5763 1.5051 -7.4124 39 1 0.2264 0.4684 -8.6158 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715926530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:41 Heat of formation + Delta-G solvation = 70.427755 kcal Electronic energy + Delta-G solvation = -18944.720146 eV Core-core repulsion = 16116.619475 eV Total energy + Delta-G solvation = -2828.100671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.16452 -38.73534 -36.43007 -35.14886 -33.28682 -31.79880 -31.15449 -29.71453 -27.95330 -25.52948 -25.36214 -24.26559 -22.55701 -21.55254 -20.47151 -18.49754 -17.90049 -17.33174 -16.79219 -16.52257 -15.82161 -15.56561 -15.18117 -14.68239 -14.52467 -14.37091 -13.95743 -13.77459 -13.12432 -13.09441 -13.02842 -12.86013 -12.78072 -12.51747 -12.37932 -12.31733 -12.14429 -11.80991 -11.70927 -11.51935 -11.37518 -10.94970 -10.88878 -10.37996 -10.07313 -8.82817 -8.01589 -6.07842 0.70764 1.42586 1.45528 1.57122 1.58112 1.59836 2.49327 3.27303 3.37042 3.54287 3.84446 3.99764 4.02419 4.30539 4.34561 4.41787 4.53582 4.55883 4.62954 4.67153 4.75876 4.76507 4.88230 4.98412 5.06230 5.12569 5.18419 5.27651 5.43374 5.45037 5.48079 5.69705 5.78268 5.79370 5.91794 6.39204 6.78196 6.91176 7.05004 7.59493 7.63086 9.04124 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.004806 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.144037 B = 5824.258346 C = 5959.523705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.497 4.497 6 H 0.044 0.956 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.168 3.832 15 H 0.055 0.945 16 C -0.122 4.122 17 C -0.035 4.035 18 C -0.033 4.033 19 N -0.284 5.284 20 C 0.102 3.898 21 C -0.164 4.164 22 N -0.120 5.120 23 N -0.293 5.293 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.258 0.742 30 H 0.331 0.669 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.232 0.768 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -3.752 -20.851 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.113 3.887 4 H 0.028 0.972 5 C -0.536 4.536 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.312 5.312 14 C 0.056 3.944 15 H 0.073 0.927 16 C -0.180 4.180 17 C -0.175 4.175 18 C -0.185 4.185 19 N -0.079 5.079 20 C -0.017 4.017 21 C -0.222 4.222 22 N -0.099 5.099 23 N -0.159 5.159 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.249 0.751 35 H 0.131 0.869 36 H 0.161 0.839 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.357 -2.355 -20.833 21.009 hybrid contribution 0.281 -1.071 1.092 1.555 sum 1.638 -3.426 -19.741 20.103 Atomic orbital electron populations 1.21439 0.96666 0.99058 1.00391 1.21957 0.95908 1.00285 0.99491 1.19013 0.94207 0.89108 0.86324 0.97188 1.21295 1.30038 1.11139 0.91083 0.93726 1.25504 0.96051 0.95936 1.00647 1.69996 1.40272 1.25068 1.20577 0.85672 0.78304 0.78815 0.79834 1.19956 1.20734 1.20794 1.60708 1.04341 1.63133 1.03004 1.19761 0.92607 0.97820 0.84191 0.92708 1.21685 0.96401 0.98478 1.01463 1.22233 0.96822 1.00736 0.97682 1.23858 1.00931 1.06116 0.87576 1.47877 1.18399 1.29609 1.12016 1.22593 1.02281 1.03510 0.73307 1.22069 0.95149 1.00885 1.04110 1.78178 1.15948 1.12583 1.03144 1.75087 1.15419 1.20493 1.04864 0.94445 0.93801 0.93963 0.91614 0.95403 0.93230 0.85015 0.93510 0.90158 0.93894 0.75146 0.86902 0.83943 0.92872 0.92944 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 9.39 71.98 0.68 -4.60 16 2 C -0.14 -6.53 5.48 30.59 0.17 -6.36 16 3 C 0.22 11.32 2.14 44.17 0.09 11.42 16 4 H 0.01 0.57 7.08 -2.39 -0.02 0.55 16 5 C -0.50 -28.13 7.35 25.60 0.19 -27.94 16 6 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.02 0.93 5.23 84.66 0.44 1.37 16 8 N -0.92 -52.77 11.38 21.45 0.24 -52.53 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.68 -30.95 5.95 -477.16 -2.84 -33.79 16 14 C 0.17 6.18 2.89 44.17 0.13 6.31 16 15 H 0.06 1.94 7.12 -2.38 -0.02 1.93 16 16 C -0.12 -4.17 9.38 71.98 0.67 -3.50 16 17 C -0.04 -1.16 5.94 41.60 0.25 -0.92 16 18 C -0.03 -0.75 11.50 83.49 0.96 0.21 16 19 N -0.28 -6.34 3.44 -347.74 -1.20 -7.53 16 20 C 0.10 1.04 7.17 86.38 0.62 1.66 16 21 C -0.16 -1.76 10.04 71.98 0.72 -1.04 16 22 N -0.12 -3.85 12.92 37.02 0.48 -3.37 16 23 N -0.29 -11.19 11.97 -48.60 -0.58 -11.77 16 24 H 0.04 1.59 6.42 -2.39 -0.02 1.57 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 26 H 0.04 2.07 7.05 -2.38 -0.02 2.05 16 27 H 0.07 3.51 6.25 -2.39 -0.01 3.49 16 28 H 0.03 1.19 7.39 -2.39 -0.02 1.17 16 29 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.33 15.36 5.95 -89.69 -0.53 14.82 16 31 H 0.05 1.76 7.40 -2.38 -0.02 1.74 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.14 0.38 8.07 -2.39 -0.02 0.36 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -71.28 316.91 3.55 -67.72 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.50 Total: 17.37 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 4.92 Total: -23.38 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -3.90 Total: -108.99 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.28 3.55 -67.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715926530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.153 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds