Wall clock time and date at job start Mon Mar 30 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09001 * 109.46905 * 181.46705 * 3 2 1 5 5 C 1.50700 * 109.47196 * 301.46922 * 3 2 1 6 6 H 1.07998 * 120.00301 * 119.99799 * 5 3 2 7 7 C 1.37871 * 119.99814 * 300.00050 * 5 3 2 8 8 N 1.31520 * 120.00121 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47002 * 60.00040 * 9 7 5 11 11 H 1.48499 * 109.47591 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47005 * 300.00140 * 9 7 5 13 13 N 1.46902 * 109.47337 * 61.46932 * 3 2 1 14 14 C 1.46896 * 111.00229 * 85.88456 * 13 3 2 15 15 H 1.09004 * 109.47513 * 326.88932 * 14 13 3 16 16 C 1.53009 * 109.47138 * 86.88718 * 14 13 3 17 17 C 1.50699 * 109.47439 * 206.88886 * 14 13 3 18 18 C 1.35350 * 126.75299 * 154.71699 * 17 14 13 19 19 N 1.35313 * 106.17615 * 179.85083 * 18 17 14 20 20 C 1.46499 * 125.86964 * 180.11492 * 19 18 17 21 21 C 1.52995 * 109.47387 * 125.32443 * 20 19 18 22 22 N 1.28716 * 108.25967 * 0.41512 * 19 18 17 23 23 N 1.28628 * 110.17921 * 359.73471 * 22 19 18 24 24 H 1.09000 * 109.47038 * 185.40831 * 1 2 3 25 25 H 1.08998 * 109.47436 * 305.41196 * 1 2 3 26 26 H 1.08994 * 109.46663 * 65.41138 * 1 2 3 27 27 H 1.08993 * 109.47184 * 239.99374 * 2 1 3 28 28 H 1.09002 * 109.46420 * 119.99392 * 2 1 3 29 29 H 0.97002 * 119.99588 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00370 * 209.83912 * 13 3 2 31 31 H 1.08996 * 109.46932 * 180.02562 * 16 14 13 32 32 H 1.08994 * 109.46745 * 300.00418 * 16 14 13 33 33 H 1.08995 * 109.46550 * 59.99704 * 16 14 13 34 34 H 1.08005 * 126.91155 * 359.97438 * 18 17 14 35 35 H 1.09000 * 109.47059 * 245.33001 * 20 19 18 36 36 H 1.09004 * 109.47097 * 5.32463 * 20 19 18 37 37 H 1.09003 * 109.47167 * 300.00725 * 21 20 19 38 38 H 1.09004 * 109.46986 * 59.99952 * 21 20 19 39 39 H 1.08997 * 109.47504 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0263 5 6 1.5082 2.1633 -1.2118 6 1 0.8899 3.0404 -1.0903 7 6 1.8108 1.7030 -2.4757 8 7 2.5633 0.6346 -2.6237 9 14 1.1522 2.5969 -3.9779 10 1 1.6478 3.9968 -3.9777 11 1 1.6171 1.9069 -5.2080 12 1 -0.3324 2.5974 -3.9423 13 7 1.5796 2.1247 1.2168 14 6 2.5019 1.8864 2.3350 15 1 2.9331 0.8894 2.2443 16 6 3.6201 2.9304 2.3053 17 6 1.7506 1.9920 3.6371 18 6 2.0777 1.4028 4.8109 19 7 1.1275 1.7775 5.6985 20 6 1.0665 1.3837 7.1082 21 6 0.9908 2.6354 7.9847 22 7 0.2829 2.5344 5.0896 23 7 0.6262 2.6819 3.8588 24 1 -0.3633 -1.0231 0.0969 25 1 -0.3634 0.5955 0.8375 26 1 -0.3632 0.4276 -0.9345 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.7765 0.3110 -3.5130 30 1 1.4574 3.1128 1.0532 31 1 4.3046 2.7532 3.1347 32 1 4.1634 2.8540 1.3635 33 1 3.1888 3.9272 2.3960 34 1 2.9273 0.7638 5.0014 35 1 0.1823 0.7687 7.2757 36 1 1.9594 0.8137 7.3652 37 1 1.8751 3.2504 7.8171 38 1 0.0979 3.2054 7.7277 39 1 0.9450 2.3424 9.0335 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715926532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:44 Heat of formation + Delta-G solvation = 68.724068 kcal Electronic energy + Delta-G solvation = -18917.608039 eV Core-core repulsion = 16089.433491 eV Total energy + Delta-G solvation = -2828.174548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.05380 -38.59885 -36.35673 -35.19568 -33.19516 -31.78655 -31.27130 -29.68887 -27.67805 -25.47096 -25.19685 -24.44955 -22.50180 -21.51136 -20.40161 -18.57504 -17.91963 -17.22796 -16.89118 -15.92497 -15.80834 -15.48261 -15.21023 -14.90831 -14.68503 -13.97679 -13.84272 -13.61641 -13.43963 -13.21098 -13.08545 -12.78680 -12.70209 -12.53696 -12.38172 -12.28401 -12.08387 -11.82655 -11.62175 -11.48896 -11.26887 -10.83188 -10.74506 -10.48559 -9.97035 -8.83219 -8.05114 -6.15166 0.79176 1.44014 1.45656 1.52580 1.64403 1.73513 2.46373 3.23704 3.49466 3.61872 3.87386 4.02880 4.10812 4.29295 4.34186 4.39617 4.52824 4.66058 4.67611 4.77712 4.82398 4.84667 4.93306 5.01161 5.09490 5.17071 5.27869 5.34455 5.39635 5.48617 5.61502 5.77101 5.86398 5.87378 5.96162 6.34069 6.60640 6.89823 7.10401 7.52930 7.73839 8.99793 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041052 B = 0.004690 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.891070 B = 5969.268161 C = 6036.661674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C 0.226 3.774 4 H -0.022 1.022 5 C -0.522 4.522 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.167 3.833 15 H 0.085 0.915 16 C -0.160 4.160 17 C -0.015 4.015 18 C -0.043 4.043 19 N -0.286 5.286 20 C 0.102 3.898 21 C -0.162 4.162 22 N -0.127 5.127 23 N -0.289 5.289 24 H 0.031 0.969 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -0.951 20.295 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C 0.118 3.882 4 H -0.005 1.005 5 C -0.561 4.561 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.302 5.302 14 C 0.054 3.946 15 H 0.103 0.897 16 C -0.219 4.219 17 C -0.155 4.155 18 C -0.195 4.195 19 N -0.081 5.081 20 C -0.017 4.017 21 C -0.220 4.220 22 N -0.105 5.105 23 N -0.154 5.154 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.771 -0.743 20.520 20.548 hybrid contribution 1.283 0.340 -1.459 1.972 sum 2.054 -0.403 19.061 19.176 Atomic orbital electron populations 1.21278 0.96831 0.97993 1.00218 1.21311 0.95588 0.98013 0.98484 1.18898 0.91495 0.91789 0.86053 1.00464 1.21411 1.31254 1.11841 0.91591 0.93194 1.25520 0.95389 0.95700 1.01201 1.69993 1.38243 1.24033 1.23080 0.85758 0.78685 0.78851 0.79191 1.19860 1.20952 1.20248 1.60454 1.48033 1.15955 1.05786 1.19725 0.89605 0.99223 0.86029 0.89664 1.22320 0.98641 0.98704 1.02268 1.22160 0.95802 1.00533 0.96970 1.23813 0.99643 1.06842 0.89172 1.47819 1.16356 1.31477 1.12486 1.22546 1.07443 0.99514 0.72215 1.22048 1.02477 0.96427 1.01011 1.78159 1.17146 1.13517 1.01724 1.75047 1.13145 1.20870 1.06346 0.94970 0.93664 0.95219 0.92192 0.95888 0.93055 0.85164 0.90070 0.93195 0.93396 0.75485 0.87453 0.84078 0.92576 0.93021 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 9.46 71.98 0.68 -4.33 16 2 C -0.10 -4.71 5.56 30.60 0.17 -4.54 16 3 C 0.23 11.41 2.11 44.17 0.09 11.50 16 4 H -0.02 -1.21 7.26 -2.39 -0.02 -1.22 16 5 C -0.52 -28.87 7.36 25.60 0.19 -28.68 16 6 H 0.05 2.79 7.60 -2.91 -0.02 2.77 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -52.35 11.33 21.45 0.24 -52.10 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.67 -29.74 5.13 -477.15 -2.45 -32.19 16 14 C 0.17 5.98 2.87 44.17 0.13 6.11 16 15 H 0.09 3.02 7.17 -2.38 -0.02 3.00 16 16 C -0.16 -5.06 9.13 71.99 0.66 -4.41 16 17 C -0.01 -0.49 6.18 41.60 0.26 -0.23 16 18 C -0.04 -1.02 11.50 83.49 0.96 -0.06 16 19 N -0.29 -6.72 3.44 -347.73 -1.20 -7.92 16 20 C 0.10 1.16 7.17 86.38 0.62 1.78 16 21 C -0.16 -1.76 10.04 71.98 0.72 -1.04 16 22 N -0.13 -4.21 12.91 37.02 0.48 -3.73 16 23 N -0.29 -11.19 12.24 -48.60 -0.59 -11.78 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 2.15 7.49 -2.39 -0.02 2.13 16 26 H 0.03 1.49 7.38 -2.39 -0.02 1.48 16 27 H 0.06 3.28 6.11 -2.39 -0.01 3.27 16 28 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 15.23 7.91 -89.69 -0.71 14.52 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.73 7.58 -2.39 -0.02 1.71 16 33 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 34 H 0.23 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.14 0.54 8.07 -2.38 -0.02 0.52 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.82 8.12 -2.38 -0.02 0.80 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -69.93 320.00 3.75 -66.18 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.32 Total: 17.37 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.93 Total: -22.29 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.52 Total: -107.72 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.93 3.75 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715926532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.904 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds