Wall clock time and date at job start Mon Mar 30 2020 03:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00199 * 2 1 4 4 O 1.21684 * 120.00365 * 180.27451 * 3 2 1 5 5 C 1.46375 * 119.99722 * 0.27654 * 3 2 1 6 6 H 1.08001 * 120.00011 * 355.29985 * 5 3 2 7 7 C 1.40049 * 120.00030 * 175.29887 * 5 3 2 8 8 N 1.30675 * 119.99994 * 6.30365 * 7 5 3 9 9 Si 1.86801 * 120.00189 * 186.30562 * 7 5 3 10 10 H 1.48495 * 109.47397 * 94.97915 * 9 7 5 11 11 H 1.48501 * 109.47128 * 214.98043 * 9 7 5 12 12 H 1.48505 * 109.46794 * 334.98012 * 9 7 5 13 13 C 1.47585 * 120.00237 * 180.27529 * 2 1 3 14 14 H 1.09040 * 107.05251 * 179.72359 * 13 2 1 15 15 C 1.52320 * 108.42103 * 60.83624 * 13 2 1 16 16 C 1.52312 * 112.59277 * 195.20766 * 15 13 2 17 17 H 1.10071 * 108.71196 * 171.13109 * 16 15 13 18 18 C 1.52354 * 111.61119 * 291.00356 * 16 15 13 19 19 C 1.52175 * 112.54785 * 69.14793 * 18 16 15 20 20 C 1.52243 * 112.63732 * 44.92131 * 19 18 16 21 21 N 1.45821 * 112.48063 * 313.49967 * 20 19 18 22 22 C 1.46529 * 112.01321 * 57.79340 * 21 20 19 23 23 C 1.45771 * 114.06178 * 289.19985 * 21 20 19 24 24 H 1.09000 * 109.46612 * 269.72555 * 1 2 3 25 25 H 1.09006 * 109.47145 * 29.72174 * 1 2 3 26 26 H 1.08997 * 109.46918 * 149.72536 * 1 2 3 27 27 H 0.96996 * 119.99705 * 180.02562 * 8 7 5 28 28 H 1.09693 * 109.16348 * 316.62962 * 15 13 2 29 29 H 1.09707 * 109.10581 * 73.87417 * 15 13 2 30 30 H 1.09710 * 109.10586 * 190.50902 * 18 16 15 31 31 H 1.09699 * 109.14208 * 307.70746 * 18 16 15 32 32 H 1.10562 * 108.03091 * 164.03217 * 19 18 16 33 33 H 1.08710 * 110.88310 * 280.11555 * 19 18 16 34 34 H 1.09681 * 109.06008 * 74.78210 * 20 19 18 35 35 H 1.09639 * 109.14789 * 192.02796 * 20 19 18 36 36 H 1.08864 * 109.92305 * 175.73130 * 22 21 20 37 37 H 1.08842 * 109.94790 * 54.58476 * 22 21 20 38 38 H 1.09687 * 109.25183 * 309.57169 * 23 21 20 39 39 H 1.09667 * 109.27715 * 192.15277 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 -0.0050 5 6 1.4071 2.4348 0.0061 6 1 0.3295 2.4366 -0.0660 7 6 2.1042 3.6454 0.1055 8 7 3.4104 3.6522 0.0687 9 14 1.1668 5.2506 0.2908 10 1 1.0633 5.6001 1.7303 11 1 1.8872 6.3306 -0.4302 12 1 -0.1953 5.0971 -0.2805 13 6 2.2030 -1.2781 -0.0061 14 1 3.2656 -1.0337 -0.0100 15 6 1.8338 -2.0410 -1.2718 16 6 2.2377 -3.5082 -1.2094 17 1 1.8044 -4.0309 -2.0758 18 6 3.7516 -3.6755 -1.2455 19 6 4.4243 -3.1766 0.0250 20 6 3.7054 -3.6333 1.2869 21 7 2.2621 -3.4406 1.2070 22 6 1.6762 -4.1459 0.0641 23 6 1.8450 -2.0449 1.2608 24 1 -0.3632 -0.0049 1.0277 25 1 -0.3634 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 3.8932 4.4906 0.1379 28 1 0.7507 -1.9718 -1.4309 29 1 2.3248 -1.5689 -2.1318 30 1 3.9924 -4.7363 -1.3883 31 1 4.1537 -3.1272 -2.1064 32 1 5.4513 -3.5852 0.0516 33 1 4.5272 -2.0944 0.0097 34 1 3.9183 -4.6960 1.4557 35 1 4.0981 -3.0768 2.1460 36 1 0.5927 -4.0420 0.0798 37 1 1.9485 -5.1992 0.0985 38 1 2.3222 -1.5577 2.1199 39 1 0.7602 -1.9969 1.4140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717470575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:32 Heat of formation + Delta-G solvation = -35.209345 kcal Electronic energy + Delta-G solvation = -19977.449041 eV Core-core repulsion = 17112.474850 eV Total energy + Delta-G solvation = -2864.974190 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30318 -37.39175 -34.23928 -33.04021 -32.46183 -31.70683 -29.72763 -26.15494 -26.06517 -25.57112 -23.42236 -21.94277 -21.19182 -18.86534 -18.20831 -16.51274 -15.82182 -15.44726 -14.87455 -14.85369 -14.61394 -14.07533 -13.86931 -13.56482 -13.12528 -12.74118 -12.41818 -12.25270 -11.96584 -11.62977 -11.45542 -11.36361 -11.13756 -11.11494 -11.06911 -10.87828 -10.67109 -10.40689 -10.24668 -10.18164 -9.97758 -9.53001 -8.85657 -7.98725 -7.56127 -7.07520 -6.20233 -4.64141 3.13069 3.20391 3.23501 4.04055 4.19778 4.52759 4.59854 4.87399 4.96080 5.02302 5.28164 5.36146 5.45823 5.49905 5.57080 5.66118 5.72181 5.79339 5.90640 5.96201 5.99827 6.01877 6.14714 6.17027 6.26096 6.32341 6.37018 6.42036 6.49477 6.59953 6.74572 6.86866 7.37294 7.44554 7.45165 7.70813 8.15510 8.36919 9.02352 9.44315 10.57436 10.76348 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037998 B = 0.006064 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.694958 B = 4616.153431 C = 4850.488093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.645 5.645 3 C 0.558 3.442 4 O -0.580 6.580 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.088 3.912 8 N -0.767 5.767 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.115 3.885 14 H 0.099 0.901 15 C -0.117 4.117 16 C -0.118 4.118 17 H 0.066 0.934 18 C -0.104 4.104 19 C -0.159 4.159 20 C 0.070 3.930 21 N -0.547 5.547 22 C 0.070 3.930 23 C 0.062 3.938 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.268 0.732 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 -13.022 -0.503 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.383 5.383 3 C 0.364 3.636 4 O -0.463 6.463 5 C -0.580 4.580 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.396 5.396 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.009 3.991 14 H 0.117 0.883 15 C -0.156 4.156 16 C -0.138 4.138 17 H 0.085 0.915 18 C -0.141 4.141 19 C -0.198 4.198 20 C -0.058 4.058 21 N -0.268 5.268 22 C -0.058 4.058 23 C -0.067 4.067 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.960 -13.093 -0.092 13.423 hybrid contribution -0.220 1.249 -0.728 1.463 sum -3.180 -11.843 -0.819 12.290 Atomic orbital electron populations 1.21367 0.82740 1.00886 0.99503 1.48325 1.04887 1.05014 1.80119 1.18259 0.86959 0.82314 0.76104 1.90571 1.14130 1.86166 1.55453 1.21017 0.93963 0.89327 1.53728 0.90949 1.25739 0.94597 1.00223 0.92660 1.70031 1.07236 1.27167 1.35161 0.86388 0.80300 0.81429 0.78834 1.19776 1.20484 1.18866 1.21335 0.99686 0.84940 0.93112 0.88286 1.21708 1.01268 0.93624 0.99004 1.21524 0.96050 0.96768 0.99468 0.91536 1.21232 0.94679 1.00429 0.97783 1.22044 0.99235 1.02866 0.95690 1.21708 0.86487 1.00939 0.96694 1.60228 1.10614 1.13670 1.42297 1.21932 0.98945 0.97208 0.87754 1.22135 1.01009 0.85793 0.97800 0.95089 0.91166 0.94021 0.92161 0.92127 0.92315 0.92726 0.92277 0.92529 0.90579 0.91533 0.91107 0.90866 0.91022 0.91142 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.86 8.95 59.85 0.54 2.40 16 2 N -0.65 -14.70 2.71 -175.52 -0.48 -15.18 16 3 C 0.56 15.93 7.61 -12.99 -0.10 15.83 16 4 O -0.58 -18.76 14.30 5.20 0.07 -18.69 16 5 C -0.54 -15.32 8.76 -35.63 -0.31 -15.64 16 6 H 0.07 1.87 5.96 -52.49 -0.31 1.56 16 7 C 0.09 2.45 5.49 -17.36 -0.10 2.35 16 8 N -0.77 -23.05 11.85 55.55 0.66 -22.39 16 9 Si 0.91 20.16 29.56 -169.99 -5.03 15.14 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.12 2.26 2.11 -68.01 -0.14 2.12 16 14 H 0.10 2.30 4.24 -51.91 -0.22 2.08 16 15 C -0.12 -1.96 4.86 -27.43 -0.13 -2.09 16 16 C -0.12 -1.58 2.91 -91.25 -0.27 -1.84 16 17 H 0.07 0.79 8.23 -51.32 -0.42 0.37 16 18 C -0.10 -1.37 5.38 -27.48 -0.15 -1.52 16 19 C -0.16 -2.28 5.13 -27.54 -0.14 -2.42 16 20 C 0.07 0.96 5.76 -4.79 -0.03 0.93 16 21 N -0.55 -7.99 4.78 -236.53 -1.13 -9.12 16 22 C 0.07 0.88 5.70 -3.98 -0.02 0.86 16 23 C 0.06 1.06 5.24 -4.76 -0.02 1.03 16 24 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 25 H 0.07 1.37 6.03 -51.93 -0.31 1.05 16 26 H 0.04 0.66 6.20 -51.93 -0.32 0.34 16 27 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 28 H 0.06 0.97 6.13 -51.54 -0.32 0.65 16 29 H 0.06 1.08 8.20 -51.53 -0.42 0.66 16 30 H 0.05 0.62 8.20 -51.53 -0.42 0.20 16 31 H 0.06 0.82 8.20 -51.53 -0.42 0.40 16 32 H 0.06 0.71 8.27 -51.03 -0.42 0.29 16 33 H 0.08 1.35 5.71 -52.09 -0.30 1.05 16 34 H 0.07 0.79 8.20 -51.54 -0.42 0.36 16 35 H 0.07 1.00 8.11 -51.57 -0.42 0.58 16 36 H 0.07 0.89 8.13 -52.01 -0.42 0.47 16 37 H 0.07 0.79 8.13 -52.02 -0.42 0.37 16 38 H 0.07 1.33 8.11 -51.54 -0.42 0.91 16 39 H 0.07 1.17 7.14 -51.55 -0.37 0.80 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -32.83 291.98 -8.30 -41.13 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.92 Total: 2.71 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.88 Total: 2.01 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.95 Total: -46.69 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.07 Total: -18.69 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.83 -8.30 -41.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717470575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.918 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds