Wall clock time and date at job start Mon Mar 30 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34781 * 120.00199 * 2 1 4 4 O 1.21684 * 120.00365 * 180.27451 * 3 2 1 5 5 C 1.46375 * 119.99722 * 0.27654 * 3 2 1 6 6 H 1.08001 * 120.00011 * 355.29985 * 5 3 2 7 7 C 1.40049 * 120.00030 * 175.29887 * 5 3 2 8 8 N 1.30675 * 119.99994 * 6.30365 * 7 5 3 9 9 Si 1.86801 * 120.00189 * 186.30562 * 7 5 3 10 10 H 1.48495 * 109.47397 * 94.97915 * 9 7 5 11 11 H 1.48501 * 109.47128 * 214.98043 * 9 7 5 12 12 H 1.48505 * 109.46794 * 334.98012 * 9 7 5 13 13 C 1.47585 * 120.00237 * 180.27529 * 2 1 3 14 14 H 1.09040 * 107.05251 * 179.72359 * 13 2 1 15 15 C 1.52320 * 108.42103 * 60.83624 * 13 2 1 16 16 C 1.52312 * 112.59277 * 195.20766 * 15 13 2 17 17 H 1.10071 * 108.71196 * 171.13109 * 16 15 13 18 18 C 1.52354 * 111.61119 * 291.00356 * 16 15 13 19 19 C 1.52175 * 112.54785 * 69.14793 * 18 16 15 20 20 C 1.52243 * 112.63732 * 44.92131 * 19 18 16 21 21 N 1.45821 * 112.48063 * 313.49967 * 20 19 18 22 22 C 1.46529 * 112.01321 * 57.79340 * 21 20 19 23 23 C 1.45771 * 114.06178 * 289.19985 * 21 20 19 24 24 H 1.09000 * 109.46612 * 269.72555 * 1 2 3 25 25 H 1.09006 * 109.47145 * 29.72174 * 1 2 3 26 26 H 1.08997 * 109.46918 * 149.72536 * 1 2 3 27 27 H 0.96996 * 119.99705 * 180.02562 * 8 7 5 28 28 H 1.09693 * 109.16348 * 316.62962 * 15 13 2 29 29 H 1.09707 * 109.10581 * 73.87417 * 15 13 2 30 30 H 1.09710 * 109.10586 * 190.50902 * 18 16 15 31 31 H 1.09699 * 109.14208 * 307.70746 * 18 16 15 32 32 H 1.10562 * 108.03091 * 164.03217 * 19 18 16 33 33 H 1.08710 * 110.88310 * 280.11555 * 19 18 16 34 34 H 1.09681 * 109.06008 * 74.78210 * 20 19 18 35 35 H 1.09639 * 109.14789 * 192.02796 * 20 19 18 36 36 H 1.08864 * 109.92305 * 175.73130 * 22 21 20 37 37 H 1.08842 * 109.94790 * 54.58476 * 22 21 20 38 38 H 1.09687 * 109.25183 * 309.57169 * 23 21 20 39 39 H 1.09667 * 109.27715 * 192.15277 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 -0.0050 5 6 1.4071 2.4348 0.0061 6 1 0.3295 2.4366 -0.0660 7 6 2.1042 3.6454 0.1055 8 7 3.4104 3.6522 0.0687 9 14 1.1668 5.2506 0.2908 10 1 1.0633 5.6001 1.7303 11 1 1.8872 6.3306 -0.4302 12 1 -0.1953 5.0971 -0.2805 13 6 2.2030 -1.2781 -0.0061 14 1 3.2656 -1.0337 -0.0100 15 6 1.8338 -2.0410 -1.2718 16 6 2.2377 -3.5082 -1.2094 17 1 1.8044 -4.0309 -2.0758 18 6 3.7516 -3.6755 -1.2455 19 6 4.4243 -3.1766 0.0250 20 6 3.7054 -3.6333 1.2869 21 7 2.2621 -3.4406 1.2070 22 6 1.6762 -4.1459 0.0641 23 6 1.8450 -2.0449 1.2608 24 1 -0.3632 -0.0049 1.0277 25 1 -0.3634 0.8925 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 3.8932 4.4906 0.1379 28 1 0.7507 -1.9718 -1.4309 29 1 2.3248 -1.5689 -2.1318 30 1 3.9924 -4.7363 -1.3883 31 1 4.1537 -3.1272 -2.1064 32 1 5.4513 -3.5852 0.0516 33 1 4.5272 -2.0944 0.0097 34 1 3.9183 -4.6960 1.4557 35 1 4.0981 -3.0768 2.1460 36 1 0.5927 -4.0420 0.0798 37 1 1.9485 -5.1992 0.0985 38 1 2.3222 -1.5577 2.1199 39 1 0.7602 -1.9969 1.4140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717470575.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:31 Heat of formation + Delta-G solvation = -58.800768 kcal Electronic energy + Delta-G solvation = -19978.472042 eV Core-core repulsion = 17112.474850 eV Total energy + Delta-G solvation = -2865.997191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60094 -39.31029 -36.10266 -34.63126 -34.22022 -33.03967 -31.16621 -28.19046 -27.35545 -27.22034 -24.67398 -23.16074 -22.77558 -20.65595 -19.48605 -18.40065 -17.73430 -16.90864 -16.56472 -16.15238 -15.88561 -15.73764 -15.28052 -14.99193 -14.59721 -14.15065 -13.99601 -13.74596 -13.46060 -13.18763 -13.15854 -13.01424 -12.78187 -12.59093 -12.30893 -12.27728 -12.16576 -12.03391 -12.01723 -11.49932 -11.24914 -10.95207 -10.87945 -9.78583 -9.41708 -8.74247 -8.30836 -6.85293 1.37547 1.38985 1.54723 2.21612 2.44436 2.72521 3.15955 3.57314 3.66792 3.82458 3.86645 4.03816 4.16427 4.18016 4.24947 4.40994 4.45830 4.51919 4.58693 4.64224 4.77801 4.82308 4.89403 4.93417 4.97537 5.03967 5.11095 5.16083 5.20005 5.28817 5.36548 5.37777 5.40465 5.77668 6.09194 6.19638 6.30731 6.46807 6.86119 7.42304 8.46249 8.66089 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037998 B = 0.006064 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.694958 B = 4616.153431 C = 4850.488093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.648 5.648 3 C 0.538 3.462 4 O -0.636 6.636 5 C -0.570 4.570 6 H 0.093 0.907 7 C 0.027 3.973 8 N -0.824 5.824 9 Si 0.996 3.004 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.245 1.245 13 C 0.116 3.884 14 H 0.054 0.946 15 C -0.110 4.110 16 C -0.114 4.114 17 H 0.097 0.903 18 C -0.104 4.104 19 C -0.158 4.158 20 C 0.069 3.931 21 N -0.544 5.544 22 C 0.070 3.930 23 C 0.076 3.924 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.273 0.727 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.040 0.960 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 -14.870 -0.630 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.385 5.385 3 C 0.344 3.656 4 O -0.523 6.523 5 C -0.606 4.606 6 H 0.111 0.889 7 C -0.188 4.188 8 N -0.453 5.453 9 Si 0.816 3.184 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.168 1.168 13 C 0.011 3.989 14 H 0.072 0.928 15 C -0.148 4.148 16 C -0.134 4.134 17 H 0.115 0.885 18 C -0.142 4.142 19 C -0.197 4.197 20 C -0.059 4.059 21 N -0.265 5.265 22 C -0.057 4.057 23 C -0.053 4.053 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.577 -15.004 -0.223 16.008 hybrid contribution 0.620 1.737 -0.703 1.974 sum -4.957 -13.267 -0.926 14.193 Atomic orbital electron populations 1.21540 0.79979 1.02245 1.00792 1.48232 1.06741 1.04781 1.78739 1.18688 0.86613 0.84395 0.75904 1.90523 1.16473 1.87500 1.57841 1.21548 0.95116 0.89913 1.54017 0.88881 1.27033 0.95503 1.04888 0.91330 1.70215 1.09804 1.28750 1.36558 0.85030 0.79096 0.75122 0.79199 1.18826 1.19837 1.16844 1.21473 0.96892 0.84336 0.96186 0.92822 1.21641 1.01680 0.95656 0.95847 1.21550 0.96166 0.94174 1.01539 0.88510 1.21258 0.94636 1.02097 0.96192 1.22008 1.00808 0.99813 0.97112 1.21778 0.85954 1.02598 0.95606 1.60302 1.11149 1.11467 1.43580 1.22125 0.99571 0.98264 0.85726 1.21883 1.01263 0.87146 0.95053 0.93722 0.91972 0.90444 0.91713 0.90686 0.95280 0.89281 0.93927 0.90932 0.95529 0.88096 0.92642 0.89528 0.87898 0.94086 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.54 8.95 127.77 1.14 4.68 16 2 N -0.65 -30.44 2.71 -827.45 -2.24 -32.68 16 3 C 0.54 32.34 7.61 86.36 0.66 32.99 16 4 O -0.64 -44.24 14.30 -4.30 -0.06 -44.30 16 5 C -0.57 -32.92 8.76 24.83 0.22 -32.70 16 6 H 0.09 4.80 5.96 -2.91 -0.02 4.78 16 7 C 0.03 1.55 5.49 85.30 0.47 2.02 16 8 N -0.82 -51.76 11.85 21.84 0.26 -51.50 16 9 Si 1.00 41.68 29.56 68.60 2.03 43.70 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 13 C 0.12 4.74 2.11 44.35 0.09 4.83 16 14 H 0.05 2.72 4.24 -2.37 -0.01 2.71 16 15 C -0.11 -3.61 4.86 30.14 0.15 -3.46 16 16 C -0.11 -2.74 2.91 -11.20 -0.03 -2.77 16 17 H 0.10 1.85 8.23 -1.81 -0.01 1.83 16 18 C -0.10 -2.59 5.38 30.11 0.16 -2.43 16 19 C -0.16 -4.57 5.13 30.07 0.15 -4.41 16 20 C 0.07 1.80 5.76 86.26 0.50 2.30 16 21 N -0.54 -14.81 4.78 -902.26 -4.31 -19.12 16 22 C 0.07 1.48 5.70 86.41 0.49 1.98 16 23 C 0.08 2.62 5.24 86.30 0.45 3.07 16 24 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 25 H 0.06 2.35 6.03 -2.38 -0.01 2.34 16 26 H 0.08 2.24 6.20 -2.39 -0.01 2.23 16 27 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 28 H 0.07 2.22 6.13 -2.02 -0.01 2.21 16 29 H 0.03 1.10 8.20 -2.01 -0.02 1.08 16 30 H 0.09 1.66 8.20 -2.01 -0.02 1.64 16 31 H 0.04 1.19 8.20 -2.01 -0.02 1.17 16 32 H 0.07 1.81 8.27 -1.55 -0.01 1.79 16 33 H 0.03 1.03 5.71 -2.54 -0.01 1.01 16 34 H 0.10 2.02 8.20 -2.02 -0.02 2.01 16 35 H 0.05 1.60 8.11 -2.05 -0.02 1.59 16 36 H 0.09 1.66 8.13 -2.46 -0.02 1.64 16 37 H 0.10 1.65 8.13 -2.47 -0.02 1.63 16 38 H 0.04 1.62 8.11 -2.02 -0.02 1.60 16 39 H 0.08 2.62 7.14 -2.03 -0.01 2.61 16 Total: -1.00 -77.77 291.98 1.19 -76.58 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.07 Total: 21.22 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 4.45 Total: 6.09 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -6.30 Total: -103.30 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.06 Total: -44.30 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -77.77 1.19 -76.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717470575.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.782 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds