Wall clock time and date at job start Mon Mar 30 2020 03:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00116 * 2 1 4 4 O 1.21686 * 119.99746 * 180.02562 * 3 2 1 5 5 C 1.46372 * 119.99872 * 359.97438 * 3 2 1 6 6 H 1.07997 * 120.00386 * 4.68485 * 5 3 2 7 7 C 1.40055 * 119.99630 * 184.40027 * 5 3 2 8 8 N 1.30671 * 119.99968 * 353.98875 * 7 5 3 9 9 Si 1.86802 * 119.99679 * 173.98685 * 7 5 3 10 10 H 1.48496 * 109.46955 * 94.98461 * 9 7 5 11 11 H 1.48503 * 109.46800 * 214.98377 * 9 7 5 12 12 H 1.48493 * 109.47238 * 334.98394 * 9 7 5 13 13 C 1.46735 * 119.99721 * 180.02562 * 2 1 3 14 14 H 1.09027 * 108.97765 * 180.02562 * 13 2 1 15 15 C 1.52994 * 109.27457 * 299.82343 * 13 2 1 16 16 C 1.52996 * 109.59873 * 176.69815 * 15 13 2 17 17 H 1.08997 * 109.74951 * 119.65347 * 16 15 13 18 18 C 1.53142 * 109.51101 * 240.11020 * 16 15 13 19 19 C 1.52983 * 109.54812 * 61.64919 * 18 16 15 20 20 C 1.52865 * 109.92037 * 55.83563 * 19 18 16 21 21 N 1.46677 * 110.20622 * 303.25732 * 20 19 18 22 22 C 1.46726 * 111.26676 * 60.88269 * 21 20 19 23 23 C 1.46577 * 111.63524 * 295.14022 * 21 20 19 24 24 H 1.09000 * 109.47111 * 89.99560 * 1 2 3 25 25 H 1.09000 * 109.47544 * 210.00442 * 1 2 3 26 26 H 1.09007 * 109.47026 * 330.00216 * 1 2 3 27 27 H 0.97001 * 119.99539 * 179.97438 * 8 7 5 28 28 H 1.09226 * 109.33027 * 296.56936 * 15 13 2 29 29 H 1.08970 * 109.65214 * 56.08575 * 15 13 2 30 30 H 1.09097 * 109.44647 * 181.74721 * 18 16 15 31 31 H 1.09044 * 109.48268 * 301.49056 * 18 16 15 32 32 H 1.08930 * 109.81519 * 294.93882 * 19 18 16 33 33 H 1.09304 * 109.17561 * 175.62647 * 19 18 16 34 34 H 1.09144 * 109.37376 * 182.96488 * 20 19 18 35 35 H 1.09115 * 109.39504 * 63.56603 * 20 19 18 36 36 H 1.08765 * 110.11400 * 176.56379 * 22 21 20 37 37 H 1.09165 * 109.34139 * 56.51082 * 22 21 20 38 38 H 1.09071 * 109.71990 * 359.68569 * 23 21 20 39 39 H 1.09318 * 109.22158 * 240.55535 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1671 -0.0005 5 6 1.4071 2.4348 -0.0006 6 1 0.3298 2.4365 0.0754 7 6 2.1044 3.6459 -0.0936 8 7 3.4107 3.6518 -0.0615 9 14 1.1669 5.2526 -0.2637 10 1 0.9889 5.8661 1.0769 11 1 1.9303 6.1812 -1.1356 12 1 -0.1637 4.9879 -0.8674 13 6 2.1986 -1.2708 -0.0006 14 1 3.2688 -1.0624 0.0000 15 6 1.8291 -2.0678 1.2520 16 6 2.5264 -3.4292 1.2183 17 1 3.1821 -3.5287 2.0833 18 6 1.4754 -4.5428 1.2369 19 6 0.5905 -4.4323 -0.0061 20 6 1.4557 -4.4637 -1.2659 21 7 2.4551 -3.3910 -1.2210 22 6 3.3496 -3.5450 -0.0682 23 6 1.8281 -2.0665 -1.2521 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 3.8935 4.4905 -0.1264 28 1 2.1513 -1.5176 2.1388 29 1 0.7491 -2.2069 1.2925 30 1 1.9743 -5.5130 1.2442 31 1 0.8605 -4.4477 2.1323 32 1 0.0211 -3.5043 0.0273 33 1 -0.1062 -5.2743 -0.0269 34 1 0.8214 -4.3314 -2.1442 35 1 1.9620 -5.4279 -1.3339 36 1 4.1191 -2.7765 -0.0866 37 1 3.8220 -4.5285 -0.1059 38 1 0.7441 -2.1738 -1.3079 39 1 2.1739 -1.5253 -2.1366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717470577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:34 Heat of formation + Delta-G solvation = -32.481275 kcal Electronic energy + Delta-G solvation = -19894.024080 eV Core-core repulsion = 17029.168188 eV Total energy + Delta-G solvation = -2864.855892 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51874 -37.45421 -34.30456 -33.05172 -32.45180 -32.01303 -29.24934 -26.12343 -25.95405 -25.72782 -23.56218 -21.92555 -21.32189 -19.01902 -17.53364 -16.82531 -16.05986 -15.56728 -15.28414 -14.95025 -14.57722 -14.12084 -13.81925 -13.30800 -13.10791 -13.01496 -12.49451 -12.11967 -11.96695 -11.60133 -11.46041 -11.34013 -11.21575 -11.13748 -11.09344 -10.91787 -10.81240 -10.52137 -10.36046 -10.19370 -10.09938 -9.63736 -8.84865 -7.96876 -7.56439 -7.14146 -6.20043 -4.64189 3.12995 3.20630 3.24334 4.02288 4.18999 4.53864 4.59094 4.78915 4.88304 4.96823 5.14794 5.30032 5.41202 5.42203 5.56550 5.58801 5.70023 5.78459 5.83476 5.87770 5.92351 5.98989 6.05128 6.08906 6.13326 6.27065 6.34294 6.39199 6.45235 6.53552 6.71307 6.74422 7.32901 7.38564 7.45007 7.65837 8.15110 8.36469 9.02323 9.42910 10.57521 10.76304 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.042976 B = 0.005671 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.376348 B = 4936.290042 C = 5093.967540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.641 5.641 3 C 0.557 3.443 4 O -0.578 6.578 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.088 3.912 8 N -0.766 5.766 9 Si 0.905 3.095 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.264 1.264 13 C 0.133 3.867 14 H 0.099 0.901 15 C -0.124 4.124 16 C -0.121 4.121 17 H 0.073 0.927 18 C -0.109 4.109 19 C -0.157 4.157 20 C 0.058 3.942 21 N -0.535 5.535 22 C 0.059 3.941 23 C 0.051 3.949 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.268 0.732 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -13.745 0.748 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.379 5.379 3 C 0.363 3.637 4 O -0.460 6.460 5 C -0.580 4.580 6 H 0.090 0.910 7 C -0.132 4.132 8 N -0.395 5.395 9 Si 0.730 3.270 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.188 1.188 13 C 0.027 3.973 14 H 0.117 0.883 15 C -0.163 4.163 16 C -0.142 4.142 17 H 0.091 0.909 18 C -0.146 4.146 19 C -0.196 4.196 20 C -0.070 4.070 21 N -0.257 5.257 22 C -0.069 4.069 23 C -0.077 4.077 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.811 -13.645 0.301 14.471 hybrid contribution -1.205 0.851 0.721 1.642 sum -6.016 -12.794 1.023 14.175 Atomic orbital electron populations 1.21363 0.82636 1.00848 0.99489 1.48009 1.04885 1.04917 1.80086 1.18268 0.86976 0.82256 0.76162 1.90585 1.14071 1.86122 1.55247 1.20996 0.93938 0.89282 1.53796 0.90983 1.25736 0.94595 1.00230 0.92661 1.70029 1.07219 1.27180 1.35065 0.86392 0.80335 0.81619 0.78649 1.19862 1.20370 1.18818 1.20928 0.99510 0.84625 0.92250 0.88311 1.22012 1.00154 0.94639 0.99508 1.21788 0.97646 0.95075 0.99685 0.90870 1.21566 0.97262 0.98153 0.97656 1.22155 0.98820 1.02234 0.96404 1.22126 0.93270 0.95120 0.96499 1.61831 1.20013 1.02587 1.41261 1.22075 0.95231 1.02107 0.87502 1.22452 0.97818 0.88320 0.99147 0.95133 0.94258 0.91053 0.92120 0.91863 0.91988 0.92251 0.92259 0.91546 0.92046 0.91116 0.91139 0.89881 0.91226 0.92842 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 9.12 59.85 0.55 2.44 16 2 N -0.64 -14.59 2.76 -175.49 -0.48 -15.07 16 3 C 0.56 15.92 7.61 -12.99 -0.10 15.82 16 4 O -0.58 -18.73 14.35 5.20 0.07 -18.66 16 5 C -0.54 -15.29 8.76 -35.63 -0.31 -15.60 16 6 H 0.07 1.85 5.96 -52.49 -0.31 1.54 16 7 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 8 N -0.77 -23.01 11.85 55.55 0.66 -22.35 16 9 Si 0.91 20.11 29.56 -169.99 -5.03 15.08 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.13 2.62 2.25 -67.88 -0.15 2.46 16 14 H 0.10 2.30 5.67 -51.91 -0.29 2.00 16 15 C -0.12 -2.05 4.81 -26.74 -0.13 -2.18 16 16 C -0.12 -1.64 3.26 -90.46 -0.29 -1.93 16 17 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.11 -1.23 5.31 -26.67 -0.14 -1.37 16 19 C -0.16 -1.77 5.45 -26.81 -0.15 -1.91 16 20 C 0.06 0.70 5.58 -4.02 -0.02 0.68 16 21 N -0.53 -7.95 5.08 -235.04 -1.19 -9.14 16 22 C 0.06 0.83 5.37 -3.83 -0.02 0.81 16 23 C 0.05 0.88 5.29 -4.07 -0.02 0.86 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.62 6.36 -51.93 -0.33 0.29 16 26 H 0.07 1.38 6.04 -51.93 -0.31 1.07 16 27 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 28 H 0.06 1.14 8.16 -51.80 -0.42 0.72 16 29 H 0.06 0.97 4.77 -51.95 -0.25 0.72 16 30 H 0.06 0.60 8.15 -51.87 -0.42 0.18 16 31 H 0.06 0.65 8.15 -51.90 -0.42 0.23 16 32 H 0.07 0.84 5.55 -51.97 -0.29 0.55 16 33 H 0.06 0.59 8.17 -51.76 -0.42 0.16 16 34 H 0.07 0.81 8.15 -51.85 -0.42 0.39 16 35 H 0.07 0.76 8.15 -51.86 -0.42 0.34 16 36 H 0.08 1.32 6.84 -52.06 -0.36 0.96 16 37 H 0.07 0.85 8.15 -51.84 -0.42 0.43 16 38 H 0.05 0.86 5.90 -51.89 -0.31 0.56 16 39 H 0.07 1.39 8.17 -51.75 -0.42 0.97 16 LS Contribution 290.14 15.07 4.37 4.37 Total: -1.00 -32.81 290.14 -8.30 -41.11 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.81 Total: 2.24 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.89 Total: 2.43 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -1.02 Total: -46.57 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.07 Total: -18.66 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.81 -8.30 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717470577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.624 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds