Wall clock time and date at job start Mon Mar 30 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 125.83650 * 2 1 4 4 N 1.40069 * 108.39021 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.04233 * 180.02562 * 4 3 2 6 6 C 1.35247 * 107.91064 * 0.02562 * 4 3 2 7 7 N 1.39213 * 126.21763 * 179.97438 * 6 4 3 8 8 C 1.46898 * 111.00001 * 68.61302 * 7 6 4 9 9 C 1.46906 * 111.00007 * 304.65775 * 7 6 4 10 10 H 1.08998 * 109.46971 * 60.00092 * 9 7 6 11 11 C 1.52998 * 109.47055 * 300.00312 * 9 7 6 12 12 C 1.50692 * 109.47087 * 179.97438 * 9 7 6 13 13 H 1.07996 * 120.00199 * 26.20624 * 12 9 7 14 14 C 1.37882 * 120.00048 * 206.48075 * 12 9 7 15 15 N 1.31510 * 119.99970 * 184.81314 * 14 12 9 16 16 Si 1.86798 * 119.99840 * 4.81687 * 14 12 9 17 17 H 1.48499 * 109.47026 * 94.19722 * 16 14 12 18 18 H 1.48496 * 109.47373 * 214.19388 * 16 14 12 19 19 H 1.48496 * 109.47216 * 334.19788 * 16 14 12 20 20 C 1.36169 * 107.56342 * 0.26262 * 6 4 3 21 21 C 1.50699 * 126.09711 * 179.73802 * 20 6 4 22 22 N 1.46894 * 109.47137 * 89.99663 * 21 20 6 23 23 H 1.09002 * 109.47105 * 90.02337 * 1 2 3 24 24 H 1.08995 * 109.46975 * 210.01737 * 1 2 3 25 25 H 1.08996 * 109.47078 * 330.02291 * 1 2 3 26 26 H 1.09002 * 109.47302 * 274.04975 * 5 4 3 27 27 H 1.09002 * 109.47085 * 34.05044 * 5 4 3 28 28 H 1.08997 * 109.47095 * 154.04924 * 5 4 3 29 29 H 1.09007 * 109.46927 * 289.17214 * 8 7 6 30 30 H 1.09002 * 109.47089 * 49.17302 * 8 7 6 31 31 H 1.09001 * 109.47086 * 169.17916 * 8 7 6 32 32 H 1.09003 * 109.47441 * 65.63262 * 11 9 7 33 33 H 1.09001 * 109.47187 * 185.63106 * 11 9 7 34 34 H 1.09002 * 109.47121 * 305.62873 * 11 9 7 35 35 H 0.97004 * 120.00361 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47094 * 209.99930 * 21 20 6 37 37 H 1.09000 * 109.46779 * 330.00046 * 21 20 6 38 38 H 1.00898 * 111.00064 * 56.04598 * 22 21 20 39 39 H 1.00902 * 110.99920 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2730 1.0607 0.0000 4 7 3.6093 0.6408 0.0006 5 6 4.7867 1.5124 0.0013 6 6 3.6202 -0.7117 0.0004 7 7 4.7500 -1.5251 0.0003 8 6 5.4694 -1.4270 1.2773 9 6 5.6330 -1.1996 -1.1277 10 1 5.9510 -0.1598 -1.0519 11 6 4.8786 -1.4076 -2.4424 12 6 6.8425 -2.0979 -1.0944 13 1 6.7806 -3.0697 -0.6273 14 6 8.0296 -1.6769 -1.6552 15 7 9.0574 -2.4955 -1.7108 16 14 8.1782 0.0563 -2.3358 17 1 8.7437 0.9505 -1.2939 18 1 9.0739 0.0480 -3.5202 19 1 6.8350 0.5484 -2.7345 20 6 2.3254 -1.1331 -0.0063 21 6 1.8580 -2.5657 -0.0145 22 7 1.7012 -3.0376 1.3677 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3633 0.8902 0.5135 26 1 5.0361 1.7871 -1.0236 27 1 4.5719 2.4128 0.5768 28 1 5.6283 0.9858 0.4513 29 1 5.9455 -0.4493 1.3520 30 1 4.7665 -1.5527 2.1009 31 1 6.2300 -2.2062 1.3266 32 1 4.0625 -0.6882 -2.5108 33 1 5.5613 -1.2632 -3.2799 34 1 4.4746 -2.4195 -2.4734 35 1 9.8927 -2.1992 -2.1050 36 1 0.9011 -2.6328 -0.5322 37 1 2.5934 -3.1848 -0.5285 38 1 1.0730 -2.4406 1.8845 39 1 1.3886 -3.9967 1.3891 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723195919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:04 Heat of formation + Delta-G solvation = 89.097418 kcal Electronic energy + Delta-G solvation = -19932.716477 eV Core-core repulsion = 17105.425383 eV Total energy + Delta-G solvation = -2827.291093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12325 -37.05162 -34.77120 -33.03728 -32.36060 -30.41681 -29.63892 -28.63888 -26.08370 -25.11836 -24.25325 -23.23345 -20.91201 -19.30382 -18.72852 -17.06585 -16.14171 -15.66163 -15.33752 -14.70434 -14.62389 -14.04851 -13.92956 -13.44735 -13.32107 -12.97726 -12.61368 -12.50352 -12.29110 -12.03142 -11.94266 -11.88409 -11.71868 -11.47991 -11.10596 -10.73736 -10.59369 -10.50519 -10.11779 -9.88129 -9.27758 -8.72658 -8.61449 -8.35230 -7.84598 -7.71920 -6.20878 -4.20410 2.29211 2.88250 3.06900 3.11945 3.22670 3.24521 4.26240 4.46322 4.76005 5.12150 5.12332 5.27129 5.35587 5.40680 5.55981 5.63411 5.68306 5.73293 5.88749 5.94747 6.08114 6.15509 6.22991 6.41024 6.48228 6.50008 6.56415 6.76300 6.80855 7.02764 7.09748 7.21312 7.45914 7.48551 7.71913 7.76470 8.10329 8.18770 8.54297 8.89502 9.40676 10.91651 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.007829 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.127281 B = 3575.407581 C = 4038.050266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.073 3.927 3 N -0.310 5.310 4 N -0.394 5.394 5 C 0.093 3.907 6 C 0.301 3.699 7 N -0.456 5.456 8 C 0.045 3.955 9 C 0.174 3.826 10 H 0.009 0.991 11 C -0.132 4.132 12 C -0.506 4.506 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.860 3.140 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.263 1.263 20 C -0.232 4.232 21 C 0.155 3.845 22 N -0.841 5.841 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.021 0.979 37 H 0.083 0.917 38 H 0.331 0.669 39 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.164 4.146 3.900 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 N -0.134 5.134 4 N -0.180 5.180 5 C -0.049 4.049 6 C 0.081 3.919 7 N -0.180 5.180 8 C -0.102 4.102 9 C 0.069 3.931 10 H 0.027 0.973 11 C -0.190 4.190 12 C -0.545 4.545 13 H 0.104 0.896 14 C -0.126 4.126 15 N -0.528 5.528 16 Si 0.687 3.313 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.245 4.245 21 C 0.024 3.976 22 N -0.370 5.370 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.122 5.114 3.830 13.703 hybrid contribution -0.234 0.897 -0.706 1.166 sum -12.356 6.011 3.123 14.091 Atomic orbital electron populations 1.20073 0.87480 1.02473 1.02427 1.21953 0.96234 0.90709 1.00436 1.77103 0.86461 1.22722 1.27157 1.49232 1.05124 1.05741 1.57915 1.22092 0.84791 0.94832 1.03193 1.19973 0.94540 0.80571 0.96809 1.60045 1.06476 1.46317 1.05140 1.22252 0.98102 1.00819 0.89002 1.20040 0.91375 0.95488 0.86214 0.97315 1.21952 0.98139 1.00462 0.98452 1.20812 0.91898 1.03534 1.38218 0.89620 1.24906 0.95669 0.96778 0.95242 1.69872 1.02969 1.35198 1.44734 0.87119 0.78556 0.86112 0.79489 1.20229 1.20874 1.18709 1.19187 0.90269 0.95260 1.19789 1.19772 0.98005 0.91066 0.88771 1.58675 1.57492 1.06096 1.14760 0.90992 0.91200 0.91303 0.91141 0.89977 0.89036 0.96417 0.92472 0.88911 0.96332 0.93062 0.92402 0.92435 0.96108 0.89815 0.85713 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.12 36.01 0.36 -0.40 16 2 C 0.07 1.20 7.21 -82.44 -0.59 0.61 16 3 N -0.31 -5.73 12.56 33.65 0.42 -5.31 16 4 N -0.39 -7.48 4.02 -67.24 -0.27 -7.75 16 5 C 0.09 1.55 9.70 59.85 0.58 2.13 16 6 C 0.30 5.88 4.13 -153.40 -0.63 5.24 16 7 N -0.46 -9.53 4.61 -174.80 -0.81 -10.33 16 8 C 0.04 0.88 8.88 60.06 0.53 1.41 16 9 C 0.17 3.98 1.30 -68.87 -0.09 3.89 16 10 H 0.01 0.21 2.68 -51.93 -0.14 0.07 16 11 C -0.13 -2.92 8.55 37.16 0.32 -2.60 16 12 C -0.51 -13.40 7.73 -34.44 -0.27 -13.67 16 13 H 0.09 2.51 7.77 -52.49 -0.41 2.10 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 16 Si 0.86 20.27 26.42 -169.99 -4.49 15.78 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -5.95 6.06 56.52 0.34 -5.61 16 20 C -0.23 -4.09 5.64 -104.79 -0.59 -4.68 16 21 C 0.15 2.35 6.89 -4.98 -0.03 2.31 16 22 N -0.84 -11.20 9.61 -11.41 -0.11 -11.31 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.68 7.95 -51.93 -0.41 0.26 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.57 4.55 -51.93 -0.24 1.33 16 29 H 0.02 0.33 5.77 -51.93 -0.30 0.03 16 30 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 31 H 0.09 1.93 7.07 -51.93 -0.37 1.57 16 32 H 0.02 0.38 7.43 -51.93 -0.39 0.00 16 33 H 0.05 1.15 7.09 -51.93 -0.37 0.78 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.02 0.27 7.95 -51.93 -0.41 -0.14 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.33 3.96 8.98 -39.29 -0.35 3.61 16 39 H 0.33 3.66 9.08 -39.29 -0.36 3.30 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -30.32 308.39 -6.22 -36.54 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.88 Total: 6.64 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.51 Total: -3.75 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.01 Total: -59.87 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.49 Total: 15.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.32 -6.22 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723195919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.638 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds