Wall clock time and date at job start Mon Mar 30 2020 04:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99694 * 2 1 4 4 H 1.48494 * 109.47340 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47038 * 120.00153 * 3 2 1 6 6 H 1.48506 * 109.46812 * 239.99757 * 3 2 1 7 7 C 1.37873 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00201 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47463 * 174.50030 * 9 7 2 11 11 C 1.46901 * 111.00128 * 286.79278 * 10 9 7 12 12 C 1.52998 * 117.49752 * 142.68566 * 11 10 9 13 13 C 1.53002 * 117.49929 * 74.02623 * 11 10 9 14 14 C 1.46895 * 111.00184 * 162.83367 * 10 9 7 15 15 H 1.09004 * 109.47239 * 178.95774 * 14 10 9 16 16 C 1.52996 * 109.46932 * 58.95881 * 14 10 9 17 17 C 1.53003 * 109.47193 * 179.97438 * 16 14 10 18 18 C 1.53002 * 109.46891 * 59.99973 * 17 16 14 19 19 C 1.52996 * 109.47224 * 300.00008 * 18 17 16 20 20 H 1.08995 * 109.46921 * 299.99901 * 19 18 17 21 21 C 1.53002 * 109.47224 * 179.97438 * 19 18 17 22 22 N 1.46895 * 109.47231 * 64.99889 * 21 19 18 23 23 C 1.53002 * 109.47275 * 298.95778 * 14 10 9 24 24 H 0.97001 * 120.00194 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47351 * 294.50521 * 9 7 2 26 26 H 1.09000 * 109.46772 * 54.50310 * 9 7 2 27 27 H 1.08997 * 115.55054 * 288.35351 * 11 10 9 28 28 H 1.09005 * 117.50249 * 359.97438 * 12 11 10 29 29 H 1.09005 * 117.49792 * 145.02208 * 12 11 10 30 30 H 1.08996 * 117.49934 * 214.97649 * 13 11 10 31 31 H 1.09001 * 117.49965 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47071 * 299.99995 * 16 14 10 33 33 H 1.09000 * 109.47093 * 59.99745 * 16 14 10 34 34 H 1.08999 * 109.47193 * 179.97438 * 17 16 14 35 35 H 1.08995 * 109.47413 * 299.99975 * 17 16 14 36 36 H 1.09004 * 109.46991 * 59.99927 * 18 17 16 37 37 H 1.09003 * 109.47236 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47115 * 185.00286 * 21 19 18 39 39 H 1.09005 * 109.47249 * 305.00027 * 21 19 18 40 40 H 1.00896 * 111.00211 * 179.97438 * 22 21 19 41 41 H 1.00905 * 111.00033 * 303.95717 * 22 21 19 42 42 H 1.08999 * 109.47127 * 299.99865 * 23 14 10 43 43 H 1.08995 * 109.47091 * 59.99721 * 23 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2002 -3.6125 -0.1316 11 6 2.7325 -3.6912 -1.4985 12 6 4.2026 -4.0821 -1.6627 13 6 3.7609 -2.6388 -1.9178 14 6 1.5795 -4.8833 0.2656 15 1 2.2981 -5.6933 0.1406 16 6 0.3543 -5.1486 -0.6114 17 6 -0.2918 -6.4725 -0.1982 18 6 -0.7215 -6.3944 1.2682 19 6 0.5037 -6.1291 2.1453 20 1 1.2224 -6.9389 2.0200 21 6 0.0739 -6.0503 3.6116 22 7 -0.4371 -7.3582 4.0430 23 6 1.1497 -4.8046 1.7319 24 1 -0.4850 0.8400 -0.0004 25 1 0.6999 -2.6005 0.9354 26 1 0.5530 -2.5156 -0.8364 27 1 2.0313 -4.0398 -2.2567 28 1 4.7749 -4.2805 -0.7564 29 1 4.4686 -4.6875 -2.5292 30 1 3.7366 -2.2953 -2.9519 31 1 4.0422 -1.8878 -1.1795 32 1 -0.3643 -4.3385 -0.4864 33 1 0.6606 -5.2046 -1.6560 34 1 -1.1649 -6.6612 -0.8227 35 1 0.4269 -7.2823 -0.3235 36 1 -1.4403 -5.5845 1.3935 37 1 -1.1822 -7.3374 1.5625 38 1 0.9301 -5.7737 4.2268 39 1 -0.7095 -5.3002 3.7208 40 1 -0.7273 -7.3324 5.0090 41 1 -1.1905 -7.6667 3.4468 42 1 2.0226 -4.6156 2.3568 43 1 0.4312 -3.9946 1.8570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724019213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:19 Heat of formation + Delta-G solvation = 13.119443 kcal Electronic energy + Delta-G solvation = -19788.796604 eV Core-core repulsion = 17061.751202 eV Total energy + Delta-G solvation = -2727.045402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.26114 -37.00226 -34.58043 -33.15061 -32.07222 -30.32627 -28.52883 -26.24428 -24.59269 -22.65023 -21.65473 -21.58627 -20.97753 -19.49384 -18.43132 -16.67576 -15.99504 -15.14820 -14.87835 -14.81991 -14.36824 -14.01339 -13.82380 -13.49676 -13.41727 -12.81845 -12.55154 -12.06666 -11.99208 -11.55982 -11.38884 -11.26775 -11.01129 -10.81861 -10.79440 -10.62673 -10.51087 -10.17493 -9.87997 -9.75938 -9.74449 -9.53146 -9.04407 -8.98006 -8.69952 -8.32848 -7.15885 -5.96762 -3.95829 3.35363 3.39492 3.42219 4.43049 4.53121 4.63417 4.80939 4.95248 5.02837 5.24127 5.38130 5.43366 5.53149 5.64392 5.71628 5.74231 5.78465 5.83338 5.90660 5.97058 6.02471 6.07990 6.14933 6.22913 6.24927 6.34810 6.42110 6.49504 6.60330 6.61581 6.73085 6.84347 6.92035 7.02832 7.12210 7.33791 7.39367 7.48402 7.91935 8.19797 8.29919 8.64379 9.11021 9.66716 11.13853 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.006551 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.508642 B = 4273.062021 C = 5018.453932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.289 1.289 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.066 0.934 9 C 0.192 3.808 10 N -0.506 5.506 11 C 0.028 3.972 12 C -0.188 4.188 13 C -0.153 4.153 14 C 0.096 3.904 15 H 0.065 0.935 16 C -0.153 4.153 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.082 4.082 20 H 0.074 0.926 21 C 0.065 3.935 22 N -0.853 5.853 23 C -0.106 4.106 24 H 0.259 0.741 25 H 0.032 0.968 26 H -0.004 1.004 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.337 0.663 41 H 0.338 0.662 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -12.359 1.904 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.215 1.215 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.084 0.916 9 C 0.068 3.932 10 N -0.229 5.229 11 C -0.082 4.082 12 C -0.226 4.226 13 C -0.190 4.190 14 C -0.014 4.014 15 H 0.084 0.916 16 C -0.192 4.192 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.101 4.101 20 H 0.092 0.908 21 C -0.066 4.066 22 N -0.383 5.383 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.014 0.986 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.085 0.915 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.869 -12.377 2.069 12.579 hybrid contribution -1.308 1.384 -0.482 1.965 sum -0.439 -10.993 1.586 11.116 Atomic orbital electron populations 1.69944 1.05985 1.26594 1.51710 1.24961 0.94793 0.99067 0.95863 0.86658 0.79514 0.83224 0.78604 1.21521 1.20297 1.20293 1.21264 0.93543 0.89877 1.48950 0.91594 1.19764 0.90074 0.87206 0.96190 1.62124 1.37805 1.03049 1.19928 1.22041 0.90301 1.04264 0.91567 1.23012 0.98327 0.99297 1.01921 1.23034 1.02436 0.92153 1.01373 1.21508 0.93155 0.92874 0.93821 0.91649 1.22256 0.99534 0.97501 0.99896 1.21429 0.99780 0.97904 0.95761 1.21591 0.97634 1.00706 0.95230 1.21154 0.97322 0.98695 0.92957 0.90778 1.21852 0.99158 0.89131 0.96454 1.58792 1.42571 1.29659 1.07244 1.21635 1.00776 0.96140 0.95864 0.93098 0.95048 0.98585 0.91286 0.89086 0.90334 0.90258 0.86959 0.91226 0.92557 0.92774 0.92429 0.92260 0.92589 0.91008 0.95437 0.85165 0.84924 0.91486 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -13.63 8.05 -34.44 -0.28 -13.91 16 8 H 0.07 1.79 5.46 -52.48 -0.29 1.50 16 9 C 0.19 4.85 3.61 -4.98 -0.02 4.83 16 10 N -0.51 -10.68 4.57 -220.15 -1.01 -11.69 16 11 C 0.03 0.54 4.52 -67.71 -0.31 0.24 16 12 C -0.19 -3.17 10.46 -26.69 -0.28 -3.45 16 13 C -0.15 -2.95 9.38 -26.69 -0.25 -3.20 16 14 C 0.10 1.70 2.23 -67.72 -0.15 1.55 16 15 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 16 C -0.15 -2.56 4.61 -26.73 -0.12 -2.69 16 17 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 18 C -0.11 -1.47 4.97 -26.73 -0.13 -1.61 16 19 C -0.08 -1.12 2.40 -90.60 -0.22 -1.33 16 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 21 C 0.06 0.81 6.24 -3.83 -0.02 0.78 16 22 N -0.85 -9.09 9.62 -10.37 -0.10 -9.19 16 23 C -0.11 -1.78 4.34 -26.70 -0.12 -1.89 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.84 5.64 -51.93 -0.29 0.55 16 26 H 0.00 -0.10 7.20 -51.93 -0.37 -0.48 16 27 H 0.07 1.35 6.58 -51.93 -0.34 1.01 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 2.41 5.66 -51.93 -0.29 2.12 16 32 H 0.07 1.35 6.79 -51.93 -0.35 1.00 16 33 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.62 6.68 -51.93 -0.35 0.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.34 2.99 9.08 -39.29 -0.36 2.63 16 41 H 0.34 3.27 7.25 -39.29 -0.28 2.99 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.38 6.10 -51.93 -0.32 1.07 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -28.70 321.34 -10.07 -38.77 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.37 Total: 7.51 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.15 Total: -20.94 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.37 Total: -46.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.70 -10.07 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724019213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.888 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds