Wall clock time and date at job start Mon Mar 30 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48506 * 109.46923 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47525 * 119.99704 * 3 2 1 6 6 H 1.48498 * 109.47036 * 239.99917 * 3 2 1 7 7 C 1.37878 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00044 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99860 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46892 * 175.92983 * 9 7 2 11 11 C 1.46897 * 111.00631 * 75.44002 * 10 9 7 12 12 C 1.53006 * 117.50127 * 257.43913 * 11 10 9 13 13 C 1.52991 * 117.50477 * 188.81244 * 11 10 9 14 14 C 1.46905 * 110.99971 * 199.39539 * 10 9 7 15 15 H 1.09001 * 109.47273 * 186.04530 * 14 10 9 16 16 C 1.52998 * 109.47003 * 306.04598 * 14 10 9 17 17 C 1.52994 * 109.47192 * 180.02562 * 16 14 10 18 18 C 1.53001 * 109.46864 * 299.99513 * 17 16 14 19 19 C 1.53004 * 109.47093 * 60.00295 * 18 17 16 20 20 H 1.09001 * 109.47054 * 59.99866 * 19 18 17 21 21 C 1.53001 * 109.47093 * 179.97438 * 19 18 17 22 22 N 1.46897 * 109.47022 * 294.99799 * 21 19 18 23 23 C 1.52997 * 109.47048 * 66.04527 * 14 10 9 24 24 H 0.96995 * 120.00184 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46995 * 295.92581 * 9 7 2 26 26 H 1.08991 * 109.47153 * 55.92949 * 9 7 2 27 27 H 1.09006 * 115.54895 * 43.13844 * 11 10 9 28 28 H 1.09004 * 117.49345 * 359.97438 * 12 11 10 29 29 H 1.08993 * 117.49866 * 145.01829 * 12 11 10 30 30 H 1.09002 * 117.49880 * 214.97901 * 13 11 10 31 31 H 1.09002 * 117.49683 * 359.97438 * 13 11 10 32 32 H 1.09010 * 109.46817 * 299.99618 * 16 14 10 33 33 H 1.09001 * 109.47544 * 59.99482 * 16 14 10 34 34 H 1.09005 * 109.47258 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.47417 * 59.99728 * 17 16 14 36 36 H 1.09001 * 109.47280 * 300.00300 * 18 17 16 37 37 H 1.09009 * 109.47297 * 179.97438 * 18 17 16 38 38 H 1.08992 * 109.46922 * 54.99839 * 21 19 18 39 39 H 1.09007 * 109.46765 * 174.99908 * 21 19 18 40 40 H 1.00901 * 110.99738 * 180.02562 * 22 21 19 41 41 H 1.00899 * 111.00123 * 303.95648 * 22 21 19 42 42 H 1.09001 * 109.47086 * 300.00118 * 23 14 10 43 43 H 1.08998 * 109.47501 * 60.00061 * 23 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6966 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2027 -3.6140 -0.0962 11 6 2.8877 -3.8356 1.1842 12 6 4.3220 -3.3197 1.3168 13 6 4.0571 -4.8220 1.1985 14 6 1.5333 -4.8388 -0.5541 15 1 2.2346 -5.6724 -0.5153 16 6 0.3374 -5.1359 0.3529 17 6 -0.3594 -6.4119 -0.1235 18 6 -0.8452 -6.2211 -1.5618 19 6 0.3507 -5.9240 -2.4688 20 1 1.0522 -6.7574 -2.4298 21 6 -0.1350 -5.7338 -3.9072 22 7 -0.6964 -6.9966 -4.4054 23 6 1.0475 -4.6475 -1.9922 24 1 -0.4850 0.8400 -0.0004 25 1 0.6807 -2.5885 0.9262 26 1 0.5706 -2.5265 -0.8492 27 1 2.2537 -3.7939 2.0700 28 1 4.7575 -2.8162 0.4536 29 1 4.6318 -2.9385 2.2897 30 1 4.1927 -5.4289 2.0936 31 1 4.3180 -5.3068 0.2577 32 1 0.6835 -5.2723 1.3775 33 1 -0.3639 -4.3024 0.3142 34 1 -1.2112 -6.6238 0.5229 35 1 0.3421 -7.2453 -0.0845 36 1 -1.5467 -5.3877 -1.6009 37 1 -1.3413 -7.1304 -1.9015 38 1 -0.9023 -4.9601 -3.9322 39 1 0.7030 -5.4351 -4.5371 40 1 -1.0241 -6.8970 -5.3545 41 1 -0.0239 -7.7452 -4.3320 42 1 0.3462 -3.8139 -2.0310 43 1 1.8995 -4.4358 -2.6384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724019214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:22 Heat of formation + Delta-G solvation = -11.031525 kcal Electronic energy + Delta-G solvation = -19759.400520 eV Core-core repulsion = 17031.307853 eV Total energy + Delta-G solvation = -2728.092667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64033 -38.32096 -35.83970 -35.04570 -33.71225 -31.47440 -30.23123 -27.96616 -25.57460 -24.58402 -23.21708 -22.78546 -22.44824 -20.83965 -19.95232 -18.52840 -17.06071 -16.88752 -16.28783 -16.02855 -15.76129 -15.54211 -15.39809 -14.97970 -14.86429 -14.25207 -13.79902 -13.66235 -13.30978 -13.04231 -12.85175 -12.79955 -12.72934 -12.52267 -12.26636 -12.24578 -11.85983 -11.69155 -11.40609 -11.30069 -11.23644 -11.10112 -10.92464 -10.66721 -10.50852 -9.53033 -8.88264 -8.14747 -6.23167 1.39356 1.42384 1.50001 2.41738 3.06026 3.11953 3.20750 3.69489 3.76095 3.92679 4.10074 4.16295 4.19627 4.27138 4.37826 4.43934 4.51534 4.61506 4.67873 4.72603 4.74701 4.81250 4.84804 4.86501 4.94587 5.08321 5.12609 5.24536 5.27076 5.31659 5.33448 5.38984 5.42036 5.44899 5.50863 5.64496 5.73261 6.15508 6.26383 6.52765 6.68144 6.74800 6.93535 7.45334 8.95151 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.006721 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.251278 B = 4164.944195 C = 4989.248629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.218 3.782 10 N -0.511 5.511 11 C 0.003 3.997 12 C -0.165 4.165 13 C -0.147 4.147 14 C 0.094 3.906 15 H 0.088 0.912 16 C -0.143 4.143 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.070 4.070 20 H 0.083 0.917 21 C 0.070 3.930 22 N -0.849 5.849 23 C -0.099 4.099 24 H 0.261 0.739 25 H -0.045 1.045 26 H 0.011 0.989 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.348 0.652 41 H 0.348 0.652 42 H 0.034 0.966 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -15.133 -3.783 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.092 3.908 10 N -0.234 5.234 11 C -0.106 4.106 12 C -0.202 4.202 13 C -0.185 4.185 14 C -0.014 4.014 15 H 0.106 0.894 16 C -0.182 4.182 17 C -0.144 4.144 18 C -0.136 4.136 19 C -0.089 4.089 20 H 0.102 0.898 21 C -0.062 4.062 22 N -0.380 5.380 23 C -0.138 4.138 24 H 0.070 0.930 25 H -0.027 1.027 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.053 0.947 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.836 -14.793 -3.555 15.476 hybrid contribution 0.035 1.467 0.064 1.469 sum 2.871 -13.326 -3.491 14.071 Atomic orbital electron populations 1.70086 1.07616 1.27566 1.52625 1.25860 0.95661 1.02914 0.95381 0.85537 0.78215 0.78475 0.78991 1.21047 1.19406 1.19463 1.21512 0.93663 0.91198 1.48629 0.92070 1.19293 0.89972 0.88530 0.92987 1.62049 1.30378 1.04797 1.26129 1.22146 0.90412 1.06536 0.91503 1.22905 0.98072 0.96979 1.02285 1.23058 0.99890 0.91861 1.03657 1.21677 0.93641 0.92157 0.93962 0.89378 1.22138 0.98450 0.98345 0.99274 1.21460 0.99975 0.96436 0.96555 1.21415 0.96811 1.01447 0.93901 1.21041 0.97012 0.96762 0.94082 0.89847 1.21693 0.97398 0.92335 0.94725 1.58652 1.44392 1.06366 1.28571 1.21534 0.99299 0.97378 0.95574 0.93002 1.02701 0.97117 0.92455 0.89949 0.88607 0.86927 0.88171 0.93109 0.95209 0.91976 0.90366 0.94750 0.89841 0.92750 0.95271 0.83844 0.83897 0.94735 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.51 -29.64 8.99 25.60 0.23 -29.41 16 8 H 0.06 3.48 7.24 -2.91 -0.02 3.46 16 9 C 0.22 11.81 3.35 85.56 0.29 12.10 16 10 N -0.51 -22.15 4.50 -850.43 -3.83 -25.98 16 11 C 0.00 0.12 3.93 44.91 0.18 0.30 16 12 C -0.16 -5.72 9.98 30.60 0.31 -5.41 16 13 C -0.15 -4.24 9.73 30.59 0.30 -3.94 16 14 C 0.09 3.33 2.14 44.91 0.10 3.43 16 15 H 0.09 2.74 7.17 -2.39 -0.02 2.72 16 16 C -0.14 -5.01 4.57 30.59 0.14 -4.87 16 17 C -0.11 -2.85 5.92 30.59 0.18 -2.67 16 18 C -0.10 -2.64 5.09 30.60 0.16 -2.48 16 19 C -0.07 -1.81 2.33 -10.78 -0.03 -1.84 16 20 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 21 C 0.07 1.66 6.18 86.30 0.53 2.19 16 22 N -0.85 -15.68 9.08 -186.72 -1.69 -17.38 16 23 C -0.10 -3.43 4.46 30.61 0.14 -3.29 16 24 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 25 H -0.04 -2.67 7.21 -2.39 -0.02 -2.69 16 26 H 0.01 0.64 5.87 -2.39 -0.01 0.62 16 27 H 0.06 2.40 7.73 -2.38 -0.02 2.39 16 28 H 0.08 3.10 8.06 -2.38 -0.02 3.08 16 29 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.10 2.72 7.82 -2.39 -0.02 2.70 16 32 H 0.05 1.77 7.32 -2.38 -0.02 1.76 16 33 H 0.03 1.27 6.76 -2.39 -0.02 1.25 16 34 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 2.00 7.75 -2.38 -0.02 1.98 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.35 5.29 9.08 -89.69 -0.81 4.48 16 41 H 0.35 5.21 8.99 -89.70 -0.81 4.40 16 42 H 0.03 1.45 6.25 -2.39 -0.01 1.43 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.61 328.71 -0.88 -66.48 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.64 Total: 22.43 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 2.98 Total: -35.50 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -5.24 Total: -101.02 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.61 -0.88 -66.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724019214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.452 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds