Wall clock time and date at job start Mon Mar 30 2020 04:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47219 * 240.00487 * 3 2 1 5 5 H 1.48503 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47276 * 119.99864 * 3 2 1 7 7 C 1.37883 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46723 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47119 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.48667 * 111.00023 * 69.87820 * 12 11 10 14 14 C 1.54417 * 104.68226 * 158.37543 * 13 12 11 15 15 C 1.54369 * 105.05229 * 336.29367 * 14 13 12 16 16 C 1.47981 * 110.99794 * 185.27355 * 12 11 10 17 17 C 1.52506 * 110.21439 * 320.53808 * 16 12 11 18 18 C 1.53145 * 109.33310 * 178.31526 * 17 16 12 19 19 N 1.46857 * 109.45239 * 301.76596 * 18 17 16 20 20 C 1.46851 * 111.29258 * 62.19107 * 19 18 17 21 21 C 1.52518 * 110.21071 * 82.80687 * 16 12 11 22 22 H 0.96998 * 119.99545 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47184 * 60.00170 * 9 7 2 24 24 H 1.08998 * 109.46784 * 299.99547 * 9 7 2 25 25 H 1.08999 * 109.47399 * 59.99574 * 10 9 7 26 26 H 1.09002 * 109.47218 * 300.00025 * 10 9 7 27 27 H 1.08997 * 109.46905 * 59.99994 * 11 10 9 28 28 H 1.09002 * 109.47176 * 300.00149 * 11 10 9 29 29 H 1.09002 * 110.39214 * 39.57059 * 13 12 11 30 30 H 1.09002 * 110.38819 * 277.17990 * 13 12 11 31 31 H 1.09003 * 110.32454 * 95.18899 * 14 13 12 32 32 H 1.09001 * 110.32272 * 217.29375 * 14 13 12 33 33 H 1.09000 * 110.34707 * 119.22851 * 15 14 13 34 34 H 1.08994 * 110.35287 * 241.40520 * 15 14 13 35 35 H 1.09001 * 109.49585 * 298.27152 * 17 16 12 36 36 H 1.08999 * 109.49525 * 58.35876 * 17 16 12 37 37 H 1.09000 * 109.47545 * 181.77583 * 18 17 16 38 38 H 1.08992 * 109.47745 * 61.76004 * 18 17 16 39 39 H 1.00907 * 111.00097 * 298.02160 * 19 18 17 40 40 H 1.09007 * 109.47732 * 177.80857 * 20 19 18 41 41 H 1.08993 * 109.47670 * 57.79852 * 20 19 18 42 42 H 1.08997 * 109.49229 * 301.63868 * 21 16 12 43 43 H 1.09004 * 109.49297 * 61.72505 * 21 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 7 2.4349 -6.1037 -0.0024 13 6 3.1439 -6.1988 1.3008 14 6 3.6501 -7.6562 1.3655 15 6 2.7148 -8.4475 0.4263 16 6 1.7338 -7.4006 -0.1299 17 6 0.4506 -7.3893 0.6942 18 6 -0.2790 -8.7237 0.5146 19 7 -0.5702 -8.9341 -0.9094 20 6 0.6647 -9.0161 -1.6998 21 6 1.4262 -7.6915 -1.5951 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.8713 -3.6048 0.8890 26 1 2.8726 -3.6040 -0.8909 27 1 0.8540 -5.0447 -0.8922 28 1 0.8532 -5.0450 0.8877 29 1 2.4566 -5.9985 2.1227 30 1 3.9830 -5.5036 1.3283 31 1 4.6797 -7.7155 1.0125 32 1 3.5773 -8.0374 2.3841 33 1 3.2860 -8.8999 -0.3843 34 1 2.1773 -9.2141 0.9843 35 1 0.6955 -7.2475 1.7468 36 1 -0.1912 -6.5755 0.3568 37 1 -1.2122 -8.7063 1.0775 38 1 0.3509 -9.5345 0.8803 39 1 -1.1796 -8.2124 -1.2644 40 1 0.4162 -9.2108 -2.7431 41 1 1.2878 -9.8246 -1.3176 42 1 0.8153 -6.8872 -2.0050 43 1 2.3585 -7.7625 -2.1554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757130822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:56 Heat of formation + Delta-G solvation = -34.512234 kcal Electronic energy + Delta-G solvation = -19594.549669 eV Core-core repulsion = 16865.438802 eV Total energy + Delta-G solvation = -2729.110867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.65778 -37.84324 -36.09490 -34.29030 -32.08796 -31.94028 -31.38743 -27.99448 -26.56253 -24.80630 -23.95878 -23.37091 -22.42640 -21.02791 -19.52938 -18.50494 -17.37378 -16.66183 -16.51595 -16.21208 -15.85810 -15.67389 -15.34296 -14.94838 -14.44232 -14.26880 -13.99118 -13.77415 -13.51810 -13.12502 -13.01557 -12.90945 -12.68365 -12.57865 -12.39268 -12.21101 -12.16477 -12.00911 -11.72770 -11.48047 -11.43110 -11.30658 -11.14764 -11.11300 -10.58390 -9.47155 -9.26430 -8.23224 -6.34906 1.37534 1.41048 1.49115 2.38472 2.95525 3.09594 3.41387 3.53516 3.69765 3.86827 4.01635 4.13098 4.19779 4.23927 4.34484 4.36002 4.42557 4.50134 4.53420 4.61771 4.65844 4.78397 4.86226 4.91520 4.96802 4.97307 5.00050 5.05393 5.08777 5.13428 5.16206 5.27545 5.33481 5.38980 5.47096 5.67779 5.80559 6.02555 6.06694 6.10371 6.24119 6.41495 6.80952 7.34458 8.88628 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031948 B = 0.004549 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.222414 B = 6154.139583 C = 6600.824157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.087 4.087 11 C 0.065 3.935 12 N -0.511 5.511 13 C 0.027 3.973 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.090 3.910 17 C -0.174 4.174 18 C 0.067 3.933 19 N -0.689 5.689 20 C 0.065 3.935 21 C -0.132 4.132 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.340 0.660 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -20.653 0.925 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.063 4.063 12 N -0.233 5.233 13 C -0.100 4.100 14 C -0.155 4.155 15 C -0.146 4.146 16 C 0.000 4.000 17 C -0.214 4.214 18 C -0.063 4.063 19 N -0.317 5.317 20 C -0.065 4.065 21 C -0.172 4.172 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.158 0.842 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.689 -21.135 0.536 21.461 hybrid contribution -0.256 2.412 0.672 2.517 sum 3.433 -18.723 1.208 19.073 Atomic orbital electron populations 1.70094 1.07829 1.27915 1.51513 1.26000 0.95796 1.03407 0.94538 0.85482 0.78301 0.77941 0.79231 1.19168 1.20562 1.19111 1.21636 0.93439 0.92387 1.50866 0.92419 1.18939 0.94296 0.93162 0.94483 1.21345 0.97913 0.92967 1.00278 1.22084 0.93927 0.90930 0.99404 1.65377 1.24686 1.01926 1.31359 1.23157 0.98131 0.98666 0.90096 1.22300 0.99970 0.92753 1.00443 1.22362 0.96313 0.96672 0.99259 1.21702 0.92752 0.89845 0.95675 1.22714 0.97989 1.00226 1.00496 1.22027 0.99982 0.94678 0.89633 1.60700 1.15888 1.52230 1.02896 1.22071 0.90236 0.95436 0.98798 1.22099 1.01473 0.98886 0.94743 0.92685 0.99224 0.99348 0.93545 0.93357 0.92398 0.95446 0.94693 0.91179 0.90573 0.89981 0.90281 0.89700 0.91920 0.93285 0.90335 0.89609 0.84225 0.89712 0.89751 0.93882 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.09 -3.86 5.21 30.59 0.16 -3.70 16 11 C 0.06 2.39 3.59 86.30 0.31 2.70 16 12 N -0.51 -15.46 5.03 -836.69 -4.21 -19.67 16 13 C 0.03 0.75 5.32 86.44 0.46 1.21 16 14 C -0.12 -2.30 7.01 31.54 0.22 -2.08 16 15 C -0.11 -2.01 5.03 31.35 0.16 -1.85 16 16 C 0.09 2.11 0.42 3.29 0.00 2.11 16 17 C -0.17 -4.03 3.74 30.48 0.11 -3.91 16 18 C 0.07 1.23 6.37 86.36 0.55 1.78 16 19 N -0.69 -12.91 6.86 -513.60 -3.52 -16.43 16 20 C 0.06 1.13 6.38 86.36 0.55 1.68 16 21 C -0.13 -2.96 4.99 30.48 0.15 -2.80 16 22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.05 2.02 7.27 -2.39 -0.02 2.00 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.20 7.17 -2.39 -0.02 2.19 16 28 H 0.03 1.03 6.45 -2.39 -0.02 1.02 16 29 H 0.03 0.99 7.22 -2.39 -0.02 0.98 16 30 H 0.07 2.04 7.79 -2.39 -0.02 2.02 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.36 7.77 -2.39 -0.02 1.34 16 34 H 0.08 1.31 6.15 -2.39 -0.01 1.30 16 35 H 0.06 1.50 7.29 -2.39 -0.02 1.48 16 36 H 0.05 1.36 6.45 -2.39 -0.02 1.34 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.38 6.47 -2.39 -0.02 1.36 16 39 H 0.34 6.57 8.85 -89.69 -0.79 5.77 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.31 7.49 -2.39 -0.02 1.29 16 42 H 0.04 1.14 7.28 -2.39 -0.02 1.12 16 43 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 Total: -1.00 -65.17 318.37 -1.72 -66.89 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.18 Total: 14.42 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.52 Total: -34.65 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -7.44 Total: -93.83 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.17 -1.72 -66.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757130822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.382 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds