Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37098 * 119.99963 * 2 1 4 4 H 1.08000 * 119.99898 * 188.08785 * 3 2 1 5 5 C 1.38943 * 120.00112 * 8.08718 * 3 2 1 6 6 N 1.31408 * 120.00245 * 8.32960 * 5 3 2 7 7 Si 1.86803 * 120.00067 * 188.32929 * 5 3 2 8 8 H 1.48500 * 109.47185 * 94.99682 * 7 5 3 9 9 H 1.48503 * 109.47201 * 214.99577 * 7 5 3 10 10 H 1.48496 * 109.47316 * 334.99246 * 7 5 3 11 11 C 1.34778 * 120.00251 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00289 * 184.96621 * 11 2 1 13 13 C 1.50699 * 119.99823 * 4.96678 * 11 2 1 14 14 H 1.09001 * 110.54529 * 327.01145 * 13 11 2 15 15 C 1.55193 * 110.61174 * 90.03812 * 13 11 2 16 16 C 1.54994 * 104.93132 * 94.51415 * 15 13 11 17 17 C 1.53257 * 104.18525 * 357.51108 * 16 15 13 18 18 H 1.09003 * 110.29447 * 269.71104 * 17 16 15 19 19 C 1.52251 * 114.44934 * 144.69672 * 17 16 15 20 20 C 1.52327 * 108.26620 * 183.01131 * 19 17 16 21 21 C 1.52822 * 110.74184 * 55.64218 * 20 19 17 22 22 C 1.53622 * 110.70220 * 306.55378 * 21 20 19 23 23 N 1.45675 * 107.80162 * 57.37978 * 22 21 20 24 24 H 1.08993 * 109.47161 * 174.75231 * 1 2 3 25 25 H 1.08994 * 109.47193 * 294.75465 * 1 2 3 26 26 H 1.09002 * 109.46886 * 54.75078 * 1 2 3 27 27 H 0.97002 * 120.00361 * 180.02562 * 6 5 3 28 28 H 1.09000 * 110.35269 * 213.37870 * 15 13 11 29 29 H 1.08996 * 110.34613 * 335.65351 * 15 13 11 30 30 H 1.08996 * 110.48906 * 238.83294 * 16 15 13 31 31 H 1.09001 * 110.48565 * 116.18069 * 16 15 13 32 32 H 1.09004 * 109.83402 * 301.96563 * 19 17 16 33 33 H 1.08999 * 109.83712 * 62.93123 * 19 17 16 34 34 H 1.09003 * 108.93611 * 295.47141 * 20 19 17 35 35 H 1.08996 * 109.39675 * 176.11173 * 20 19 17 36 36 H 1.08997 * 109.22911 * 186.24192 * 21 20 19 37 37 H 1.09004 * 109.19846 * 66.85332 * 21 20 19 38 38 H 1.08994 * 109.79619 * 297.80463 * 22 21 20 39 39 H 1.09002 * 109.84102 * 176.97857 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2224 1.1920 -0.1316 5 6 1.4662 2.3846 0.1693 6 7 0.1923 2.3735 0.4918 7 14 2.3569 4.0103 -0.0615 8 1 2.1478 4.4967 -1.4489 9 1 1.8219 5.0086 0.8989 10 1 3.8091 3.8180 0.1820 11 6 2.1389 -1.1672 0.0005 12 8 3.3484 -1.1691 0.0914 13 6 1.3897 -2.4699 -0.1119 14 1 0.4178 -2.3955 0.3760 15 6 1.2278 -2.8804 -1.5998 16 6 2.4186 -3.8311 -1.8836 17 6 3.2076 -3.8473 -0.5698 18 1 3.9621 -3.0607 -0.5721 19 6 3.8452 -5.1886 -0.2342 20 6 4.5241 -5.0680 1.1240 21 6 3.5307 -4.5977 2.1858 22 6 2.8299 -3.3056 1.7395 23 7 2.1759 -3.5710 0.4651 24 1 -0.3633 -1.0233 -0.0940 25 1 -0.3633 0.4303 0.9332 26 1 -0.3633 0.5931 -0.8393 27 1 -0.2856 3.2094 0.6096 28 1 0.2825 -3.4023 -1.7483 29 1 1.2822 -2.0023 -2.2432 30 1 3.0343 -3.4400 -2.6935 31 1 2.0591 -4.8313 -2.1250 32 1 3.0770 -5.9601 -0.1804 33 1 4.5801 -5.4496 -0.9957 34 1 5.3385 -4.3473 1.0497 35 1 4.9279 -6.0379 1.4143 36 1 4.0630 -4.4134 3.1190 37 1 2.7832 -5.3746 2.3465 38 1 3.5649 -2.5099 1.6185 39 1 2.0872 -3.0122 2.4814 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900452542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = -36.591923 kcal Electronic energy + Delta-G solvation = -20048.440240 eV Core-core repulsion = 17183.406097 eV Total energy + Delta-G solvation = -2865.034143 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75438 -39.31331 -36.67191 -35.83977 -33.64400 -33.09834 -30.25254 -28.99680 -27.95957 -26.27961 -23.99015 -23.37494 -21.99963 -20.82674 -20.14162 -18.98469 -18.08624 -16.92077 -16.59108 -16.19998 -15.97772 -15.72190 -15.22847 -15.05249 -14.60410 -14.29872 -13.98701 -13.61563 -13.49538 -13.26790 -13.17566 -12.89409 -12.74031 -12.44879 -12.31028 -12.19367 -12.14367 -11.80837 -11.52760 -11.46534 -11.27717 -11.11493 -11.05623 -10.80498 -9.85025 -9.11753 -8.25218 -5.95482 1.31599 1.35933 1.48614 1.95702 2.22265 3.00707 3.07970 3.13272 3.66124 3.77512 3.96721 4.07342 4.13935 4.17800 4.27270 4.42517 4.50707 4.61374 4.67643 4.79851 4.85281 4.92921 4.95652 5.02113 5.08718 5.12010 5.15535 5.18690 5.21250 5.31638 5.39327 5.40009 5.48650 5.58699 5.95703 6.03319 6.19408 6.45932 7.14016 7.47348 8.01210 8.63649 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.033141 B = 0.006421 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.670778 B = 4359.736702 C = 4577.351885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.462 5.462 3 C -0.341 4.341 4 H 0.072 0.928 5 C -0.005 4.005 6 N -0.897 5.897 7 Si 0.991 3.009 8 H -0.267 1.267 9 H -0.270 1.270 10 H -0.279 1.279 11 C 0.415 3.585 12 O -0.626 6.626 13 C 0.056 3.944 14 H 0.107 0.893 15 C -0.102 4.102 16 C -0.106 4.106 17 C 0.047 3.953 18 H 0.036 0.964 19 C -0.095 4.095 20 C -0.118 4.118 21 C -0.102 4.102 22 C 0.037 3.963 23 N -0.487 5.487 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -13.156 -1.766 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.181 5.181 3 C -0.469 4.469 4 H 0.090 0.910 5 C -0.206 4.206 6 N -0.536 5.536 7 Si 0.815 3.185 8 H -0.192 1.192 9 H -0.194 1.194 10 H -0.204 1.204 11 C 0.203 3.797 12 O -0.515 6.515 13 C -0.056 4.056 14 H 0.125 0.875 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.061 4.061 18 H 0.054 0.946 19 C -0.133 4.133 20 C -0.155 4.155 21 C -0.139 4.139 22 C -0.092 4.092 23 N -0.210 5.210 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.096 -13.411 -1.533 13.499 hybrid contribution 0.848 2.344 0.081 2.494 sum 0.944 -11.067 -1.452 11.202 Atomic orbital electron populations 1.21707 0.79004 0.98605 1.02883 1.44082 1.07039 1.04923 1.62016 1.19700 0.93244 0.84327 1.49648 0.91041 1.26042 0.96785 1.02244 0.95511 1.70193 1.09208 1.28368 1.45880 0.84955 0.77831 0.77087 0.78671 1.19185 1.19448 1.20372 1.21731 0.88290 0.86457 0.83176 1.90402 1.16124 1.87411 1.57531 1.22565 0.97546 0.86825 0.98685 0.87534 1.22477 1.00961 0.99104 0.91480 1.22109 0.95807 1.00686 0.95828 1.22629 0.93798 0.98019 0.91633 0.94569 1.21222 0.99831 0.95350 0.96892 1.21344 0.97516 1.01479 0.95197 1.21507 0.98354 0.95800 0.98281 1.22175 0.97310 0.98331 0.91359 1.64454 1.21092 1.32847 1.02587 0.91595 0.91932 0.93802 0.91780 0.87501 0.93020 0.91981 0.88216 0.89928 0.90448 0.94400 0.89360 0.91288 0.90249 0.95643 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.58 8.74 127.77 1.12 6.70 16 2 N -0.46 -24.68 3.03 -658.92 -1.99 -26.67 16 3 C -0.34 -19.99 9.52 84.04 0.80 -19.19 16 4 H 0.07 4.51 7.23 -2.91 -0.02 4.49 16 5 C 0.00 -0.27 5.38 84.93 0.46 0.19 16 6 N -0.90 -47.79 9.69 21.66 0.21 -47.58 16 7 Si 0.99 43.52 29.56 68.60 2.03 45.55 16 8 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 C 0.41 20.77 6.07 87.66 0.53 21.30 16 12 O -0.63 -35.59 11.81 -3.05 -0.04 -35.62 16 13 C 0.06 2.14 2.73 44.89 0.12 2.27 16 14 H 0.11 3.83 6.14 -2.39 -0.01 3.82 16 15 C -0.10 -3.20 6.60 32.03 0.21 -2.99 16 16 C -0.11 -3.05 6.66 31.36 0.21 -2.84 16 17 C 0.05 1.58 2.14 44.40 0.09 1.67 16 18 H 0.04 1.57 5.96 -2.39 -0.01 1.55 16 19 C -0.10 -2.41 5.59 30.12 0.17 -2.24 16 20 C -0.12 -2.99 5.91 30.31 0.18 -2.81 16 21 C -0.10 -2.80 6.06 30.74 0.19 -2.61 16 22 C 0.04 1.37 5.21 86.74 0.45 1.82 16 23 N -0.49 -17.15 4.82 -843.64 -4.07 -21.22 16 24 H 0.07 2.47 5.31 -2.39 -0.01 2.46 16 25 H 0.06 3.11 6.67 -2.39 -0.02 3.09 16 26 H 0.04 2.09 7.51 -2.39 -0.02 2.08 16 27 H 0.27 13.55 8.31 -92.71 -0.77 12.77 16 28 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.05 1.80 7.88 -2.39 -0.02 1.79 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 2.22 8.02 -2.39 -0.02 2.20 16 32 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.03 1.18 5.71 -2.39 -0.01 1.16 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -67.03 292.85 1.70 -65.33 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.03 Total: 18.95 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.53 Total: 1.26 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -5.85 Total: -95.47 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.04 Total: -35.62 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.03 1.70 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900452542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.736 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds