Wall clock time and date at job start Mon Mar 30 2020 04:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 N 1.46508 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.35315 * 125.86815 * 125.29073 * 4 3 2 6 6 C 1.35345 * 106.17483 * 180.18859 * 5 4 3 7 7 C 1.50698 * 126.75528 * 179.85650 * 6 5 4 8 8 H 1.09001 * 109.46665 * 324.71228 * 7 6 5 9 9 C 1.53006 * 109.47184 * 84.70839 * 7 6 5 10 10 N 1.46899 * 109.47365 * 204.71075 * 7 6 5 11 11 C 1.46903 * 110.99807 * 154.99790 * 10 7 6 12 12 C 1.53001 * 109.46980 * 180.02562 * 11 10 7 13 13 C 1.50699 * 109.47166 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00173 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99942 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00252 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47378 * 90.00021 * 17 15 13 19 19 H 1.48499 * 109.47129 * 210.00035 * 17 15 13 20 20 H 1.48501 * 109.46999 * 329.99767 * 17 15 13 21 21 N 1.33772 * 106.49287 * 359.59408 * 6 5 4 22 22 N 1.28626 * 108.89239 * 0.26110 * 21 6 5 23 23 H 1.08995 * 109.47062 * 59.99513 * 1 2 3 24 24 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46336 * 300.00073 * 1 2 3 26 26 H 1.09004 * 109.46777 * 239.99883 * 2 1 3 27 27 H 1.08995 * 109.47062 * 120.00487 * 2 1 3 28 28 H 1.08998 * 109.46958 * 60.00187 * 3 2 1 29 29 H 1.09004 * 109.47015 * 299.99907 * 3 2 1 30 30 H 1.08002 * 126.91384 * 0.04536 * 5 4 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.46801 * 300.00442 * 9 7 6 33 33 H 1.09001 * 109.46998 * 60.00038 * 9 7 6 34 34 H 1.00901 * 110.99898 * 31.04470 * 10 7 6 35 35 H 1.09001 * 109.47143 * 300.00154 * 11 10 7 36 36 H 1.08998 * 109.47112 * 60.00049 * 11 10 7 37 37 H 1.08999 * 109.46902 * 300.00388 * 12 11 10 38 38 H 1.09000 * 109.46678 * 59.99879 * 12 11 10 39 39 H 0.96994 * 119.99845 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2976 2.0761 -0.8959 6 6 5.5720 1.8090 -0.5267 7 6 6.8276 2.2864 -1.2097 8 1 6.6642 2.3219 -2.2868 9 6 7.1844 3.6849 -0.7017 10 7 7.9292 1.3614 -0.9117 11 6 8.9568 1.4114 -1.9603 12 6 10.0846 0.4365 -1.6160 13 6 11.1392 0.4882 -2.6913 14 1 11.0170 1.1500 -3.5360 15 6 12.2594 -0.3100 -2.5973 16 7 12.4080 -1.1162 -1.5688 17 14 13.5669 -0.2453 -3.9298 18 1 14.5772 0.7860 -3.5824 19 1 14.2290 -1.5701 -4.0383 20 1 12.9338 0.0995 -5.2281 21 7 5.4978 1.0427 0.5673 22 7 4.2596 0.8436 0.8531 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9776 2.6728 -1.7373 31 1 8.0924 4.0303 -1.1961 32 1 6.3670 4.3712 -0.9228 33 1 7.3478 3.6494 0.3754 34 1 7.5871 0.4206 -0.7852 35 1 8.5144 1.1316 -2.9163 36 1 9.3581 2.4226 -2.0278 37 1 10.5271 0.7159 -0.6598 38 1 9.6829 -0.5746 -1.5488 39 1 13.1959 -1.6780 -1.5029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902951817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:57 Heat of formation + Delta-G solvation = 80.341512 kcal Electronic energy + Delta-G solvation = -17925.472511 eV Core-core repulsion = 15097.801733 eV Total energy + Delta-G solvation = -2827.670778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.25164 -37.02026 -35.95473 -33.38878 -32.60779 -31.65821 -29.66527 -27.90808 -27.33452 -24.47351 -23.30308 -22.58150 -21.64049 -20.37748 -19.94903 -17.45725 -16.57108 -16.21063 -15.58796 -15.28773 -14.86600 -14.52847 -14.30981 -14.00749 -13.47583 -13.03754 -12.79350 -12.58085 -12.21080 -12.17429 -11.92618 -11.80781 -11.55219 -11.33549 -11.05252 -10.99169 -10.75698 -10.73290 -10.47591 -10.04968 -9.87864 -9.35395 -9.09659 -9.04474 -8.27862 -7.69049 -5.92067 -3.94679 1.56407 2.22621 2.62988 3.36807 3.42550 3.45539 4.02960 4.26083 4.35565 4.48619 4.57805 4.68532 4.79684 4.83605 4.90802 5.11797 5.31182 5.39860 5.43446 5.48292 5.51826 5.64239 5.68898 5.80080 5.94027 6.12363 6.24508 6.41631 6.47605 6.53219 6.58007 7.08656 7.60560 7.83754 7.92823 8.07737 8.20141 8.51767 8.60227 9.13045 9.68491 11.19387 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.038827 B = 0.003343 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.970544 B = 8373.500614 C = 8672.096466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.296 5.296 5 C -0.055 4.055 6 C -0.012 4.012 7 C 0.168 3.832 8 H 0.054 0.946 9 C -0.133 4.133 10 N -0.677 5.677 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.243 5.243 22 N -0.090 5.090 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.187 0.813 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.344 0.656 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.014 0.986 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.943 7.344 0.651 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.004 4.004 4 N -0.090 5.090 5 C -0.206 4.206 6 C -0.150 4.150 7 C 0.056 3.944 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.310 5.310 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 N -0.109 5.109 22 N -0.069 5.069 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.204 0.796 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.488 6.764 2.405 25.519 hybrid contribution 0.083 0.213 -2.430 2.441 sum -24.405 6.977 -0.025 25.383 Atomic orbital electron populations 1.21700 0.93925 1.02855 1.02218 1.21830 0.96877 0.94571 1.04430 1.22162 0.73108 1.00156 1.05005 1.47415 1.08896 1.33477 1.19195 1.23304 0.90953 1.05989 1.00331 1.22220 0.95053 1.01249 0.96528 1.19797 0.85010 0.94257 0.95342 0.92839 1.21768 1.00895 0.93905 1.02549 1.60565 1.11377 1.11606 1.47424 1.22234 0.92761 1.01262 0.89977 1.19059 0.91406 0.93334 0.97432 1.21181 1.04491 1.23026 1.07218 0.92792 1.25011 0.98200 0.95468 0.95758 1.69986 1.28480 1.25309 1.29398 0.86597 0.81931 0.77262 0.82198 1.20657 1.21283 1.19986 1.75172 1.08557 1.14406 1.12792 1.78312 0.96577 1.17276 1.14709 0.92310 0.91624 0.92125 0.91000 0.89858 0.88471 0.87895 0.79576 0.91675 0.93316 0.91810 0.83701 0.96814 0.92208 0.95499 0.96808 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.88 6.06 -26.73 -0.16 -1.04 16 3 C 0.12 0.73 6.46 -4.04 -0.03 0.70 16 4 N -0.30 -3.30 3.44 -61.26 -0.21 -3.51 16 5 C -0.05 -0.61 11.50 -17.05 -0.20 -0.81 16 6 C -0.01 -0.18 5.93 -82.78 -0.49 -0.67 16 7 C 0.17 2.62 3.10 -68.86 -0.21 2.41 16 8 H 0.05 0.77 7.80 -51.93 -0.40 0.37 16 9 C -0.13 -1.88 9.40 37.16 0.35 -1.53 16 10 N -0.68 -13.30 6.23 -107.95 -0.67 -13.97 16 11 C 0.07 1.44 5.42 -3.82 -0.02 1.42 16 12 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 N -0.24 -4.25 11.96 33.29 0.40 -3.85 16 22 N -0.09 -1.36 12.91 60.35 0.78 -0.58 16 23 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.67 8.12 -51.93 -0.42 0.24 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.35 8.07 -51.93 -0.42 -0.06 16 30 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.06 0.94 7.45 -51.93 -0.39 0.55 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.34 7.05 8.09 -39.29 -0.32 6.73 16 35 H 0.01 0.29 8.06 -51.93 -0.42 -0.13 16 36 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -34.29 328.68 -6.51 -40.80 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.52 Total: -0.86 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.95 Total: -13.10 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 1.03 Total: -48.87 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.29 -6.51 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902951817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.142 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds