Wall clock time and date at job start Mon Mar 30 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.50707 * 119.99627 * 2 1 4 4 C 1.53008 * 109.46934 * 94.99864 * 3 2 1 5 5 N 1.46900 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.46898 * 110.99912 * 66.04533 * 5 4 3 7 7 C 1.46893 * 110.99901 * 190.00196 * 5 4 3 8 8 C 1.47096 * 120.00519 * 179.97438 * 2 1 3 9 9 O 1.21617 * 119.99624 * 0.02562 * 8 2 1 10 10 N 1.34777 * 120.00417 * 179.97438 * 8 2 1 11 11 C 1.47067 * 136.05361 * 359.63291 * 10 8 2 12 12 C 1.53751 * 87.88637 * 152.95898 * 11 10 8 13 13 C 1.50707 * 114.26903 * 139.79216 * 12 11 10 14 14 H 1.08001 * 119.99914 * 266.48116 * 13 12 11 15 15 C 1.37873 * 119.99888 * 86.47357 * 13 12 11 16 16 N 1.31513 * 120.00357 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99797 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47343 * 90.00085 * 17 15 13 19 19 H 1.48501 * 109.47166 * 210.00162 * 17 15 13 20 20 H 1.48496 * 109.47006 * 330.00105 * 17 15 13 21 21 C 1.47065 * 136.05926 * 179.97438 * 10 8 2 22 22 H 1.08002 * 120.00602 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99630 * 179.72200 * 1 2 3 24 24 H 1.08994 * 109.47306 * 214.99538 * 3 2 1 25 25 H 1.08995 * 109.47023 * 335.00135 * 3 2 1 26 26 H 1.08994 * 109.46858 * 299.99949 * 4 3 2 27 27 H 1.09003 * 109.46664 * 59.99752 * 4 3 2 28 28 H 1.09003 * 109.46976 * 59.99827 * 6 5 4 29 29 H 1.08994 * 109.47363 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47566 * 300.00436 * 6 5 4 31 31 H 1.09002 * 109.47349 * 59.99852 * 7 5 4 32 32 H 1.08998 * 109.47143 * 180.02562 * 7 5 4 33 33 H 1.09004 * 109.47376 * 299.99677 * 7 5 4 34 34 H 1.08991 * 113.46811 * 267.69014 * 11 10 8 35 35 H 1.09000 * 113.46640 * 38.13353 * 11 10 8 36 36 H 1.08999 * 114.39752 * 272.67251 * 12 11 10 37 37 H 0.96996 * 120.00360 * 180.02562 * 16 15 13 38 38 H 1.08997 * 113.47105 * 321.86981 * 21 10 8 39 39 H 1.09001 * 113.46467 * 92.25396 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0834 1.3052 0.0000 4 6 2.4472 1.6840 1.4371 5 7 3.1821 2.9560 1.4371 6 6 2.3225 4.0607 0.9914 7 6 3.7527 3.2343 2.7618 8 6 2.0655 -1.2738 0.0006 9 8 1.4574 -2.3271 0.0006 10 7 3.4133 -1.2738 0.0000 11 6 4.4721 -0.2532 -0.0076 12 6 5.3813 -1.2729 0.6978 13 6 6.8060 -1.2766 0.2063 14 1 7.1066 -1.9613 -0.5730 15 6 7.7255 -0.4058 0.7514 16 7 7.3596 0.4276 1.7006 17 14 9.4913 -0.4100 0.1417 18 1 9.6274 0.5450 -0.9873 19 1 10.3972 -0.0034 1.2459 20 1 9.8529 -1.7749 -0.3181 21 6 4.4723 -2.2943 0.0008 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0045 24 1 2.9941 1.1990 -0.5893 25 1 1.4584 2.0855 -0.4343 26 1 1.5365 1.7902 2.0264 27 1 3.0721 0.9036 1.8714 28 1 1.4687 4.1503 1.6630 29 1 2.8915 4.9902 1.0004 30 1 1.9694 3.8610 -0.0203 31 1 4.4394 2.4338 3.0371 32 1 4.2909 4.1817 2.7338 33 1 2.9507 3.2941 3.4976 34 1 4.8122 0.0120 -1.0086 35 1 4.2391 0.6186 0.6038 36 1 5.3007 -1.2717 1.7848 37 1 8.0065 1.0405 2.0839 38 1 4.2394 -3.1611 0.6192 39 1 4.8117 -2.5683 -0.9981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912398713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:52 Heat of formation + Delta-G solvation = 30.321021 kcal Electronic energy + Delta-G solvation = -19303.005968 eV Core-core repulsion = 16440.873388 eV Total energy + Delta-G solvation = -2862.132580 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74692 -37.50521 -37.13945 -34.21658 -32.62691 -29.28122 -29.13640 -27.44030 -25.45485 -24.93290 -24.15254 -22.11632 -20.94755 -19.50565 -17.81426 -16.72912 -16.17099 -15.74052 -15.14013 -14.92756 -14.63699 -14.54359 -14.22670 -13.50185 -13.16735 -13.00077 -12.43805 -12.27900 -12.21216 -11.80234 -11.71862 -11.56459 -11.38334 -11.27794 -11.08602 -10.92661 -10.69382 -10.57937 -10.25314 -9.57015 -9.21456 -9.11420 -8.92730 -8.49984 -8.14912 -7.79778 -6.13252 -4.18004 1.69117 3.26751 3.34268 3.36985 3.64827 3.76459 4.14991 4.37454 4.93990 5.13993 5.16510 5.20437 5.29161 5.43720 5.47125 5.66114 5.73367 5.78343 5.80149 5.94546 6.02653 6.11380 6.21901 6.24088 6.28193 6.30446 6.46870 6.52762 6.64977 6.65975 6.86970 6.94975 7.21034 7.24331 7.58928 7.83659 8.23099 8.55778 8.80696 8.84559 9.47988 10.96114 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.007812 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.470217 B = 3583.347259 C = 4936.925356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.154 4.154 3 C -0.090 4.090 4 C 0.059 3.941 5 N -0.539 5.539 6 C 0.022 3.978 7 C 0.027 3.973 8 C 0.564 3.436 9 O -0.571 6.571 10 N -0.634 5.634 11 C 0.084 3.916 12 C 0.036 3.964 13 C -0.518 4.518 14 H 0.062 0.938 15 C 0.071 3.929 16 N -0.880 5.880 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.098 3.902 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.056 0.944 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 6.838 -0.533 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.157 4.157 3 C -0.128 4.128 4 C -0.069 4.069 5 N -0.262 5.262 6 C -0.126 4.126 7 C -0.121 4.121 8 C 0.355 3.645 9 O -0.453 6.453 10 N -0.366 5.366 11 C -0.038 4.038 12 C 0.017 3.983 13 C -0.557 4.557 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.516 5.516 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.025 4.025 22 H 0.126 0.874 23 H 0.131 0.869 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.106 0.894 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.829 6.409 -0.727 10.934 hybrid contribution 0.232 0.293 0.184 0.416 sum -8.597 6.702 -0.543 10.914 Atomic orbital electron populations 1.24452 0.94540 1.02613 0.94373 1.21677 0.95358 0.94418 1.04246 1.20897 1.01202 0.92956 0.97734 1.22194 0.96491 0.92171 0.96020 1.61883 1.34828 1.02146 1.27379 1.22435 0.95325 0.94541 1.00331 1.22380 0.98749 1.02938 0.88026 1.17967 0.80626 0.88831 0.77071 1.90711 1.67770 1.33330 1.53533 1.49934 1.02911 1.14365 1.69424 1.24021 0.83706 0.94914 1.01154 1.20368 0.92542 0.89038 0.96347 1.20879 0.92988 1.20563 1.21226 0.91994 1.24983 0.98713 0.95147 0.94437 1.69940 1.34931 1.21255 1.25497 0.86582 0.84426 0.78461 0.78469 1.20550 1.21199 1.19813 1.23376 0.84757 0.93723 1.00594 0.87374 0.86947 0.88701 0.91254 0.95246 0.89423 0.96209 0.91613 0.91395 0.90035 0.91598 0.96430 0.91056 0.89589 0.91541 0.92739 0.92564 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 13.90 28.91 0.40 -1.25 16 2 C -0.15 -2.50 5.25 -102.85 -0.54 -3.04 16 3 C -0.09 -1.34 4.53 -27.88 -0.13 -1.47 16 4 C 0.06 0.89 3.91 -3.82 -0.01 0.88 16 5 N -0.54 -7.96 5.02 -251.26 -1.26 -9.22 16 6 C 0.02 0.26 9.32 60.06 0.56 0.82 16 7 C 0.03 0.38 9.57 60.06 0.57 0.96 16 8 C 0.56 11.57 8.00 -12.67 -0.10 11.47 16 9 O -0.57 -13.29 17.00 5.26 0.09 -13.20 16 10 N -0.63 -13.24 3.68 -186.48 -0.69 -13.93 16 11 C 0.08 1.77 5.60 -8.37 -0.05 1.72 16 12 C 0.04 0.85 3.79 -91.13 -0.35 0.50 16 13 C -0.52 -13.18 8.83 -34.44 -0.30 -13.49 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.88 -23.43 13.26 55.43 0.74 -22.70 16 17 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.10 2.09 8.17 -8.51 -0.07 2.02 16 22 H 0.11 1.12 8.02 -52.49 -0.42 0.70 16 23 H 0.11 1.60 7.49 -52.48 -0.39 1.21 16 24 H 0.09 1.58 5.34 -51.93 -0.28 1.30 16 25 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 26 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.09 1.57 6.55 -51.93 -0.34 1.23 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 31 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 32 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 35 H 0.09 1.79 4.07 -51.93 -0.21 1.58 16 36 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -28.52 317.85 -7.54 -36.06 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.07 Total: 2.30 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.11 Total: 0.86 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -1.21 Total: -45.85 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.52 -7.54 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912398713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.383 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds