Wall clock time and date at job start Mon Mar 30 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46897 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.31857 * 34.30198 * 13 12 11 15 15 C 1.54742 * 110.35423 * 272.09257 * 13 12 11 16 16 C 1.55174 * 102.85444 * 219.30324 * 15 13 12 17 17 N 1.48672 * 103.37895 * 36.96106 * 16 15 13 18 18 C 1.47293 * 105.67484 * 321.43089 * 17 16 15 19 19 C 1.53701 * 110.42016 * 145.45016 * 18 17 16 20 20 C 1.55024 * 104.05636 * 97.30270 * 19 18 17 21 21 C 1.54943 * 102.81764 * 37.46198 * 20 19 18 22 22 C 1.53317 * 110.61510 * 263.93384 * 18 17 16 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 1.00896 * 111.00031 * 56.04700 * 12 11 10 31 31 H 1.08999 * 110.72487 * 337.59684 * 15 13 12 32 32 H 1.08998 * 110.72094 * 100.87641 * 15 13 12 33 33 H 1.08996 * 110.56996 * 278.50330 * 16 15 13 34 34 H 1.09001 * 110.81363 * 155.53180 * 16 15 13 35 35 H 1.00900 * 110.99948 * 81.85327 * 17 16 15 36 36 H 1.08996 * 110.51382 * 215.94567 * 19 18 17 37 37 H 1.09000 * 110.51028 * 338.66001 * 19 18 17 38 38 H 1.08996 * 110.74486 * 279.13030 * 20 19 18 39 39 H 1.09002 * 110.74399 * 155.79107 * 20 19 18 40 40 H 1.09011 * 110.48069 * 203.69546 * 21 20 19 41 41 H 1.08996 * 110.48846 * 81.06217 * 21 20 19 42 42 H 1.09001 * 110.07646 * 358.65256 * 22 18 17 43 43 H 1.09009 * 110.07396 * 120.13479 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 7 2.4351 -6.1036 -0.0005 13 6 1.7348 -7.3949 -0.0005 14 1 0.8118 -7.3250 -0.5762 15 6 1.4322 -7.8431 1.4493 16 6 1.6962 -9.3715 1.4004 17 7 2.8627 -9.4900 0.4863 18 6 2.6399 -8.4928 -0.5746 19 6 3.9778 -7.8950 -1.0381 20 6 4.3337 -8.7087 -2.3088 21 6 2.9534 -8.9172 -2.9812 22 6 1.9863 -9.1441 -1.7990 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 3.0705 -6.0365 0.7804 31 1 2.1089 -7.3576 2.1524 32 1 0.3934 -7.6376 1.7077 33 1 0.8327 -9.8964 0.9919 34 1 1.9435 -9.7537 2.3908 35 1 3.7260 -9.3097 0.9765 36 1 3.8605 -6.8390 -1.2813 37 1 4.7418 -8.0291 -0.2724 38 1 4.7814 -9.6658 -2.0415 39 1 4.9976 -8.1387 -2.9589 40 1 2.9738 -9.7925 -3.6306 41 1 2.6655 -8.0297 -3.5446 42 1 1.8498 -10.2118 -1.6267 43 1 1.0251 -8.6729 -2.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925609922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:36 Heat of formation + Delta-G solvation = -17.312717 kcal Electronic energy + Delta-G solvation = -19085.793510 eV Core-core repulsion = 16357.428470 eV Total energy + Delta-G solvation = -2728.365040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24685 -36.12402 -35.12758 -33.28380 -31.20391 -29.32340 -28.63117 -28.00856 -25.59265 -23.32665 -22.41224 -21.44149 -20.49238 -20.19060 -18.78453 -16.38865 -16.18873 -15.68311 -15.37556 -14.86538 -14.62116 -14.41791 -13.95123 -13.61771 -13.22246 -12.88386 -12.68303 -12.33867 -11.92840 -11.73693 -11.40945 -11.20650 -11.08118 -11.03690 -10.93884 -10.86893 -10.64320 -10.58496 -10.55533 -10.43464 -10.39105 -9.71253 -9.35241 -9.06205 -8.71434 -8.34781 -8.08423 -5.99728 -4.01812 3.31148 3.38557 3.43008 4.08138 4.21513 4.47061 4.51659 4.72888 4.84172 4.96014 5.07201 5.09508 5.33520 5.36257 5.40379 5.53481 5.59688 5.70357 5.72039 5.78875 5.80453 5.86164 5.92338 5.94579 6.01476 6.06646 6.13935 6.17403 6.30604 6.35725 6.59896 6.71066 6.75885 6.84054 7.12643 7.26042 7.35612 7.58528 7.68568 7.83109 8.00707 8.43926 9.05675 9.62346 11.11797 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031950 B = 0.003943 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.168306 B = 7099.236551 C = 7505.781790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.058 3.942 12 N -0.675 5.675 13 C 0.068 3.932 14 H 0.084 0.916 15 C -0.188 4.188 16 C 0.044 3.956 17 N -0.663 5.663 18 C 0.103 3.897 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.101 4.101 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.336 0.664 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.335 0.665 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.941 -19.913 -0.314 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.304 5.304 13 C -0.045 4.045 14 H 0.103 0.897 15 C -0.229 4.229 16 C -0.086 4.086 17 N -0.291 5.291 18 C 0.011 3.989 19 C -0.160 4.160 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.140 4.140 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.662 -20.380 -1.374 20.951 hybrid contribution 0.080 1.808 1.545 2.380 sum 4.742 -18.572 0.171 19.169 Atomic orbital electron populations 1.69978 1.06072 1.26449 1.51129 1.25032 0.94841 0.99278 0.95379 0.86545 0.80146 0.83808 0.77561 1.19718 1.20991 1.21062 1.21293 0.93078 0.91049 1.50211 0.92636 1.19066 0.94018 0.91427 0.97071 1.21618 0.99158 0.93029 1.00625 1.22168 0.94195 0.90826 0.99833 1.60729 1.19616 1.01023 1.49032 1.22905 0.96876 0.90360 0.94352 0.89735 1.23911 1.02543 0.98083 0.98380 1.23067 0.94936 0.94257 0.96369 1.62858 1.04484 1.49744 1.12032 1.21874 0.95840 0.88895 0.92245 1.22687 0.93838 1.02719 0.96785 1.22479 0.96707 0.99652 0.97069 1.22341 0.95285 1.01031 0.97207 1.22108 0.97828 1.00931 0.93114 0.93097 0.96592 0.96898 0.92554 0.93786 0.95837 0.91528 0.84544 0.91435 0.90966 0.90431 0.91122 0.84833 0.87091 0.92679 0.92106 0.92069 0.92277 0.91669 0.91074 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 11 C 0.06 0.99 5.53 -3.82 -0.02 0.97 16 12 N -0.67 -9.31 3.82 -105.52 -0.40 -9.72 16 13 C 0.07 0.82 2.93 -66.57 -0.20 0.62 16 14 H 0.08 1.12 6.81 -51.93 -0.35 0.76 16 15 C -0.19 -2.03 6.73 -24.66 -0.17 -2.20 16 16 C 0.04 0.42 7.56 -1.69 -0.01 0.40 16 17 N -0.66 -6.74 6.94 -96.39 -0.67 -7.41 16 18 C 0.10 1.14 1.03 -130.63 -0.13 1.00 16 19 C -0.12 -1.37 5.59 -25.30 -0.14 -1.51 16 20 C -0.12 -1.26 6.91 -24.64 -0.17 -1.44 16 21 C -0.12 -1.26 6.84 -24.96 -0.17 -1.44 16 22 C -0.10 -1.11 6.28 -25.82 -0.16 -1.27 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.34 4.46 8.12 -39.29 -0.32 4.14 16 31 H 0.07 0.74 7.59 -51.93 -0.39 0.35 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.33 3.18 8.00 -39.29 -0.31 2.87 16 36 H 0.11 1.46 6.23 -51.93 -0.32 1.14 16 37 H 0.05 0.58 7.42 -51.93 -0.39 0.19 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 43 H 0.06 0.67 7.10 -51.92 -0.37 0.30 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -29.23 330.30 -10.15 -39.38 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.90 Total: 2.83 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.87 Total: -20.39 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.34 Total: -43.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.23 -10.15 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925609922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.070 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds