Wall clock time and date at job start Mon Mar 30 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46897 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.31857 * 34.30198 * 13 12 11 15 15 C 1.54742 * 110.35423 * 272.09257 * 13 12 11 16 16 C 1.55174 * 102.85444 * 219.30324 * 15 13 12 17 17 N 1.48672 * 103.37895 * 36.96106 * 16 15 13 18 18 C 1.47293 * 105.67484 * 321.43089 * 17 16 15 19 19 C 1.53701 * 110.42016 * 145.45016 * 18 17 16 20 20 C 1.55024 * 104.05636 * 97.30270 * 19 18 17 21 21 C 1.54943 * 102.81764 * 37.46198 * 20 19 18 22 22 C 1.53317 * 110.61510 * 263.93384 * 18 17 16 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 1.00896 * 111.00031 * 56.04700 * 12 11 10 31 31 H 1.08999 * 110.72487 * 337.59684 * 15 13 12 32 32 H 1.08998 * 110.72094 * 100.87641 * 15 13 12 33 33 H 1.08996 * 110.56996 * 278.50330 * 16 15 13 34 34 H 1.09001 * 110.81363 * 155.53180 * 16 15 13 35 35 H 1.00900 * 110.99948 * 81.85327 * 17 16 15 36 36 H 1.08996 * 110.51382 * 215.94567 * 19 18 17 37 37 H 1.09000 * 110.51028 * 338.66001 * 19 18 17 38 38 H 1.08996 * 110.74486 * 279.13030 * 20 19 18 39 39 H 1.09002 * 110.74399 * 155.79107 * 20 19 18 40 40 H 1.09011 * 110.48069 * 203.69546 * 21 20 19 41 41 H 1.08996 * 110.48846 * 81.06217 * 21 20 19 42 42 H 1.09001 * 110.07646 * 358.65256 * 22 18 17 43 43 H 1.09009 * 110.07396 * 120.13479 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 7 2.4351 -6.1036 -0.0005 13 6 1.7348 -7.3949 -0.0005 14 1 0.8118 -7.3250 -0.5762 15 6 1.4322 -7.8431 1.4493 16 6 1.6962 -9.3715 1.4004 17 7 2.8627 -9.4900 0.4863 18 6 2.6399 -8.4928 -0.5746 19 6 3.9778 -7.8950 -1.0381 20 6 4.3337 -8.7087 -2.3088 21 6 2.9534 -8.9172 -2.9812 22 6 1.9863 -9.1441 -1.7990 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 3.0705 -6.0365 0.7804 31 1 2.1089 -7.3576 2.1524 32 1 0.3934 -7.6376 1.7077 33 1 0.8327 -9.8964 0.9919 34 1 1.9435 -9.7537 2.3908 35 1 3.7260 -9.3097 0.9765 36 1 3.8605 -6.8390 -1.2813 37 1 4.7418 -8.0291 -0.2724 38 1 4.7814 -9.6658 -2.0415 39 1 4.9976 -8.1387 -2.9589 40 1 2.9738 -9.7925 -3.6306 41 1 2.6655 -8.0297 -3.5446 42 1 1.8498 -10.2118 -1.6267 43 1 1.0251 -8.6729 -2.0050 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925609922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:36 Heat of formation + Delta-G solvation = -35.243747 kcal Electronic energy + Delta-G solvation = -19086.571057 eV Core-core repulsion = 16357.428470 eV Total energy + Delta-G solvation = -2729.142588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16441 -37.38358 -36.22779 -35.13689 -32.95728 -30.23087 -29.49708 -29.36029 -27.23501 -24.55974 -23.82919 -22.37980 -21.94843 -21.33617 -19.74103 -18.50690 -17.13239 -16.73860 -16.57430 -16.30586 -16.14529 -15.51935 -14.97774 -14.97404 -14.35867 -14.20261 -13.82324 -13.64842 -13.59609 -13.17965 -12.85949 -12.68229 -12.45968 -12.28639 -12.08287 -11.96198 -11.89868 -11.77627 -11.59010 -11.47534 -11.45999 -11.36348 -11.29552 -11.05392 -10.57231 -9.60250 -9.20980 -8.21482 -6.32621 1.39375 1.39727 1.53318 2.40103 3.09684 3.11867 3.26213 3.63323 3.79075 3.96513 4.09011 4.14006 4.22917 4.25970 4.39741 4.46219 4.55016 4.68986 4.70485 4.73399 4.85960 4.89749 4.96348 4.97221 5.03152 5.04091 5.10647 5.16342 5.20883 5.23246 5.29597 5.33582 5.48172 5.51681 5.69847 5.73613 5.84501 5.97940 6.05640 6.25653 6.42424 6.54647 6.84666 7.36970 8.90749 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031950 B = 0.003943 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.168306 B = 7099.236551 C = 7505.781790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.090 4.090 11 C 0.074 3.926 12 N -0.668 5.668 13 C 0.065 3.935 14 H 0.072 0.928 15 C -0.185 4.185 16 C 0.049 3.951 17 N -0.662 5.662 18 C 0.108 3.892 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.102 4.102 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.342 0.658 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.341 0.659 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -20.653 0.045 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.055 4.055 12 N -0.298 5.298 13 C -0.047 4.047 14 H 0.090 0.910 15 C -0.226 4.226 16 C -0.081 4.081 17 N -0.290 5.290 18 C 0.016 3.984 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.126 -21.144 -1.011 22.037 hybrid contribution -0.405 2.002 1.429 2.493 sum 5.721 -19.141 0.419 19.983 Atomic orbital electron populations 1.70107 1.07844 1.27717 1.51848 1.25997 0.95770 1.03429 0.94701 0.85386 0.79095 0.78680 0.77816 1.18541 1.20331 1.20313 1.21726 0.93546 0.92377 1.50332 0.92207 1.18973 0.94444 0.93252 0.94615 1.21354 0.97933 0.92832 1.00706 1.21828 0.94038 0.90396 0.99248 1.60663 1.18909 1.00782 1.49452 1.22949 0.96577 0.89744 0.95435 0.90994 1.23859 1.02343 0.99193 0.97158 1.23074 0.94736 0.93100 0.97149 1.62847 1.05024 1.49076 1.12075 1.21795 0.95427 0.88598 0.92551 1.22618 0.94162 1.01628 0.97521 1.22464 0.96649 0.99835 0.96625 1.22345 0.95211 1.01168 0.97144 1.22106 0.97685 1.00897 0.93315 0.92776 0.99175 0.99250 0.92802 0.93152 0.96224 0.92442 0.83859 0.91329 0.91338 0.90389 0.89376 0.84158 0.89029 0.91818 0.91389 0.91840 0.91075 0.92591 0.90873 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.74 5.41 30.60 0.17 -3.57 16 11 C 0.07 2.53 5.53 86.30 0.48 3.01 16 12 N -0.67 -18.03 3.82 -487.75 -1.86 -19.89 16 13 C 0.07 1.53 2.93 45.65 0.13 1.66 16 14 H 0.07 1.89 6.81 -2.39 -0.02 1.87 16 15 C -0.18 -3.74 6.73 31.93 0.21 -3.52 16 16 C 0.05 0.83 7.56 86.71 0.66 1.49 16 17 N -0.66 -12.00 6.94 -458.87 -3.19 -15.19 16 18 C 0.11 2.24 1.03 3.94 0.00 2.24 16 19 C -0.12 -2.54 5.59 31.52 0.18 -2.36 16 20 C -0.12 -2.26 6.91 31.95 0.22 -2.04 16 21 C -0.12 -2.38 6.84 31.74 0.22 -2.16 16 22 C -0.10 -2.11 6.28 31.18 0.20 -1.91 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 24 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 30 H 0.34 8.66 8.12 -89.70 -0.73 7.93 16 31 H 0.07 1.39 7.59 -2.39 -0.02 1.37 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.34 5.60 8.00 -89.69 -0.72 4.88 16 36 H 0.09 2.32 6.23 -2.39 -0.01 2.31 16 37 H 0.06 1.21 7.42 -2.39 -0.02 1.20 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.49 7.93 -2.39 -0.02 1.47 16 43 H 0.05 1.17 7.10 -2.38 -0.02 1.15 16 Total: -1.00 -62.34 330.30 0.09 -62.24 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.47 Total: 19.88 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.31 Total: -36.43 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -4.77 Total: -92.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.34 0.09 -62.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925609922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.000 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds