Wall clock time and date at job start Mon Mar 30 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 N 1.28601 * 124.61891 * 269.69881 * 3 2 1 5 5 C 1.31373 * 108.71622 * 179.82871 * 4 3 2 6 6 C 1.50700 * 127.04890 * 180.12899 * 5 4 3 7 7 C 1.39674 * 105.90234 * 0.41146 * 5 4 3 8 8 C 1.50705 * 127.05026 * 179.74671 * 7 5 4 9 9 H 1.08997 * 109.46761 * 15.02945 * 8 7 5 10 10 C 1.53000 * 109.47377 * 255.02607 * 8 7 5 11 11 N 1.46903 * 109.46955 * 135.02656 * 8 7 5 12 12 C 1.46902 * 110.99849 * 205.00082 * 11 8 7 13 13 C 1.52997 * 109.46894 * 180.02562 * 12 11 8 14 14 C 1.50702 * 109.46901 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00209 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99755 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00100 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46903 * 119.99986 * 18 16 14 21 21 H 1.48498 * 109.47039 * 240.00196 * 18 16 14 22 22 N 1.28607 * 124.61795 * 89.99466 * 3 2 1 23 23 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 27 27 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 28 28 H 1.09000 * 109.47366 * 270.34530 * 6 5 4 29 29 H 1.09000 * 109.47458 * 30.34268 * 6 5 4 30 30 H 1.09000 * 109.47944 * 150.34447 * 6 5 4 31 31 H 1.09000 * 109.46903 * 300.00429 * 10 8 7 32 32 H 1.09006 * 109.46797 * 59.99576 * 10 8 7 33 33 H 1.08995 * 109.47289 * 180.02562 * 10 8 7 34 34 H 1.00897 * 110.99919 * 81.04752 * 11 8 7 35 35 H 1.09000 * 109.46840 * 300.00177 * 12 11 8 36 36 H 1.08993 * 109.46967 * 60.00180 * 12 11 8 37 37 H 1.09000 * 109.47364 * 299.99663 * 13 12 11 38 38 H 1.08998 * 109.47314 * 59.99735 * 13 12 11 39 39 H 0.97004 * 120.00125 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2672 2.0682 -1.0583 5 6 2.6831 3.2613 -0.6984 6 6 3.0846 4.3950 -1.6063 7 6 2.6830 3.2613 0.6984 8 6 3.0839 4.3953 1.6064 9 1 3.1287 5.3213 1.0331 10 6 4.4585 4.1029 2.2112 11 7 2.0944 4.5335 2.6833 12 6 2.0822 5.9031 3.2145 13 6 1.0423 6.0075 4.3318 14 6 1.0303 7.4124 4.8771 15 1 1.6973 8.1564 4.4673 16 6 0.1669 7.7481 5.8984 17 7 -0.6456 6.8422 6.3970 18 14 0.1514 9.4896 6.5738 19 1 1.1525 10.3112 5.8471 20 1 -1.1990 10.0795 6.3909 21 1 0.4882 9.4627 8.0199 22 7 2.2618 2.0701 1.0584 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 4.1501 4.3253 -1.8253 29 1 2.5181 4.3345 -2.5356 30 1 2.8762 5.3454 -1.1150 31 1 4.4137 3.1769 2.7844 32 1 5.1927 4.0003 1.4120 33 1 4.7483 4.9229 2.8683 34 1 2.2631 3.8624 3.4176 35 1 3.0675 6.1476 3.6115 36 1 1.8292 6.6002 2.4158 37 1 0.0570 5.7629 3.9352 38 1 1.2958 5.3104 5.1304 39 1 -1.2528 7.0783 7.1157 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:38 Heat of formation + Delta-G solvation = 87.739649 kcal Electronic energy + Delta-G solvation = -18367.875070 eV Core-core repulsion = 15540.525099 eV Total energy + Delta-G solvation = -2827.349971 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.37049 -37.02096 -34.96601 -33.30829 -32.56807 -31.61600 -30.12096 -27.83710 -27.71641 -24.80893 -23.80046 -22.48674 -21.09877 -20.43065 -19.94011 -17.18996 -16.46068 -16.26411 -15.15246 -14.63893 -14.44573 -14.25041 -14.13992 -13.83692 -13.43033 -12.97871 -12.75759 -12.50118 -12.43641 -12.29164 -12.17119 -11.84558 -11.59492 -11.17498 -10.98008 -10.95340 -10.89873 -10.52410 -10.48245 -10.00701 -9.87743 -9.37082 -9.10627 -8.78044 -8.32519 -7.74200 -5.96521 -3.98958 1.98911 2.39777 2.58968 3.33322 3.40587 3.44530 4.13817 4.45304 4.63015 4.68677 4.75256 4.90969 5.06165 5.10653 5.27741 5.36840 5.39586 5.44211 5.49030 5.58428 5.67341 5.75695 5.85781 5.98383 5.99037 6.19567 6.35597 6.39338 6.44146 6.52178 6.89656 7.02215 7.53752 7.78191 7.87246 8.01416 8.13702 8.47196 8.56463 9.08828 9.64685 11.14997 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.004158 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.503135 B = 6732.716087 C = 7256.055644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 N -0.164 5.164 4 N -0.297 5.297 5 C -0.001 4.001 6 C -0.062 4.062 7 C 0.031 3.969 8 C 0.170 3.830 9 H 0.094 0.906 10 C -0.175 4.175 11 N -0.681 5.681 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.271 5.271 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.014 0.986 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -11.626 -14.536 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 N -0.065 5.065 4 N -0.140 5.140 5 C -0.164 4.164 6 C -0.121 4.121 7 C -0.134 4.134 8 C 0.057 3.943 9 H 0.112 0.888 10 C -0.234 4.234 11 N -0.311 5.311 12 C -0.061 4.061 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 N -0.112 5.112 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.555 -12.888 -14.830 20.712 hybrid contribution 0.909 1.638 0.980 2.114 sum 7.465 -11.250 -13.850 19.342 Atomic orbital electron populations 1.22180 0.93306 1.03504 1.03956 1.21847 0.95969 0.74872 1.05147 1.47941 1.45860 1.13203 0.99456 1.73870 1.18421 1.05414 1.16251 1.22988 1.05242 0.94307 0.93851 1.20036 1.01372 0.93281 0.97415 1.23046 1.03456 0.93816 0.93051 1.19733 0.89796 0.92715 0.92026 0.88820 1.22462 0.97388 1.02370 1.01230 1.60548 1.49139 1.07506 1.13955 1.22203 0.98910 0.86655 0.98375 1.19065 0.93973 0.96568 0.91649 1.21220 1.20558 0.96047 1.18035 0.92658 1.25005 0.95504 0.97157 0.96723 1.69987 1.23174 1.33381 1.26726 0.86543 0.77833 0.84901 0.78754 1.19738 1.21025 1.21069 1.74003 1.16609 1.05425 1.15127 0.89934 0.91609 0.91028 0.87708 0.87963 0.90808 0.90923 0.90114 0.92265 0.92502 0.91583 0.83940 0.96382 0.92295 0.95726 0.96786 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.14 1.33 7.26 -4.04 -0.03 1.30 16 3 N -0.16 -2.34 3.95 -10.62 -0.04 -2.38 16 4 N -0.30 -4.42 12.05 33.71 0.41 -4.01 16 5 C 0.00 -0.01 7.35 -82.25 -0.60 -0.61 16 6 C -0.06 -0.66 10.29 36.01 0.37 -0.28 16 7 C 0.03 0.49 6.19 -82.25 -0.51 -0.02 16 8 C 0.17 2.62 3.03 -68.86 -0.21 2.41 16 9 H 0.09 1.35 6.85 -51.93 -0.36 0.99 16 10 C -0.17 -2.34 9.14 37.16 0.34 -2.00 16 11 N -0.68 -12.78 6.23 -107.95 -0.67 -13.45 16 12 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 13 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 14 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 N -0.27 -4.42 12.05 33.71 0.41 -4.02 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.79 7.32 -51.93 -0.38 0.41 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.88 7.45 -51.93 -0.39 0.50 16 34 H 0.34 6.46 8.47 -39.29 -0.33 6.13 16 35 H 0.02 0.37 7.43 -51.93 -0.39 -0.02 16 36 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 37 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 328.34 15.07 4.95 4.95 Total: -1.00 -33.44 328.34 -6.53 -39.97 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.45 Total: 0.75 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.84 Total: -12.04 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.83 Total: -50.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.44 -6.53 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.710 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds