Wall clock time and date at job start Mon Mar 30 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47226 * 270.00167 * 3 2 1 5 5 H 1.48497 * 109.47269 * 30.00501 * 3 2 1 6 6 H 1.48499 * 109.46968 * 150.00506 * 3 2 1 7 7 C 1.37876 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47140 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99826 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.40976 * 33.94668 * 12 11 10 14 14 C 1.52942 * 109.40841 * 274.17491 * 12 11 10 15 15 C 1.52927 * 108.84412 * 297.81473 * 14 12 11 16 16 C 1.52837 * 108.87190 * 301.41214 * 15 14 12 17 17 N 1.47146 * 110.11589 * 59.74279 * 16 15 14 18 18 C 1.47148 * 109.27513 * 175.64108 * 17 16 15 19 19 C 1.52840 * 110.12183 * 184.32947 * 18 17 16 20 20 C 1.53216 * 108.82797 * 300.18606 * 19 18 17 21 21 C 1.52944 * 108.80666 * 58.64732 * 20 19 18 22 22 C 1.46706 * 111.52115 * 299.40448 * 17 16 15 23 23 H 1.09008 * 109.50787 * 298.85303 * 22 17 16 24 24 H 0.97002 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46949 * 59.99665 * 9 7 2 26 26 H 1.09002 * 109.47366 * 299.99770 * 9 7 2 27 27 H 1.08997 * 109.46853 * 60.00153 * 10 9 7 28 28 H 1.09003 * 109.47419 * 299.99850 * 10 9 7 29 29 H 1.00893 * 111.00255 * 303.95069 * 11 10 9 30 30 H 1.09001 * 109.59840 * 57.72840 * 14 12 11 31 31 H 1.09006 * 109.59851 * 178.20066 * 14 12 11 32 32 H 1.09000 * 109.61372 * 181.55152 * 15 14 12 33 33 H 1.09004 * 109.49250 * 61.19453 * 15 14 12 34 34 H 1.08996 * 109.36135 * 299.53960 * 16 15 14 35 35 H 1.09008 * 109.25351 * 179.87785 * 16 15 14 36 36 H 1.09006 * 109.36648 * 304.53114 * 18 17 16 37 37 H 1.09001 * 109.36222 * 64.26598 * 18 17 16 38 38 H 1.08997 * 109.57193 * 59.99091 * 19 18 17 39 39 H 1.09000 * 109.57964 * 180.24755 * 19 18 17 40 40 H 1.09000 * 109.59733 * 178.48691 * 20 19 18 41 41 H 1.09002 * 109.59961 * 298.80109 * 20 19 18 42 42 H 1.08994 * 109.53559 * 181.94547 * 21 20 19 43 43 H 1.09004 * 109.29145 * 62.17525 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5108 -4.9342 -0.0012 12 6 2.4353 -6.0759 -0.0018 13 1 3.3265 -5.8206 0.5716 14 6 2.8357 -6.4049 -1.4407 15 6 1.5845 -6.8093 -2.2215 16 6 0.9423 -8.0150 -1.5360 17 7 0.5741 -7.6740 -0.1528 18 6 -0.1353 -8.8108 0.4553 19 6 -0.6212 -8.4389 1.8559 20 6 0.5904 -8.0681 2.7174 21 6 1.3254 -6.9002 2.0579 22 6 1.7485 -7.2875 0.6370 23 1 2.4486 -8.1219 0.6804 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8753 -4.9845 0.7808 30 1 3.2892 -5.5283 -1.9036 31 1 3.5466 -7.2312 -1.4426 32 1 1.8597 -7.0732 -3.2426 33 1 0.8794 -5.9781 -2.2345 34 1 1.6490 -8.8448 -1.5279 35 1 0.0480 -8.3073 -2.0866 36 1 -0.9910 -9.0767 -0.1653 37 1 0.5403 -9.6635 0.5239 38 1 -1.2991 -7.5877 1.7932 39 1 -1.1411 -9.2880 2.2996 40 1 0.2555 -7.7746 3.7123 41 1 1.2599 -8.9248 2.7949 42 1 2.2098 -6.6489 2.6433 43 1 0.6629 -6.0356 2.0155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926132521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:21 Heat of formation + Delta-G solvation = -35.378264 kcal Electronic energy + Delta-G solvation = -19644.090898 eV Core-core repulsion = 16914.942477 eV Total energy + Delta-G solvation = -2729.148421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06539 -37.48207 -36.01312 -35.00114 -33.07736 -31.74459 -30.45514 -28.67848 -26.00663 -24.43234 -24.10780 -23.21535 -22.33213 -20.62200 -19.96856 -18.42876 -17.08078 -16.76662 -16.44911 -16.33500 -15.44654 -15.40949 -15.14485 -14.76348 -14.67711 -14.37472 -14.21878 -13.83609 -13.51736 -13.14666 -12.99790 -12.87340 -12.64498 -12.46193 -12.40388 -12.13697 -12.05504 -11.71960 -11.59883 -11.52019 -11.33200 -11.23693 -11.02778 -10.75039 -10.55369 -9.18740 -8.99408 -8.19046 -6.30830 1.40028 1.42054 1.52927 2.41108 2.94633 3.14041 3.47534 3.69137 3.75758 3.96026 4.11101 4.22585 4.26720 4.29192 4.36202 4.46616 4.54587 4.61134 4.66279 4.69626 4.73022 4.81117 4.88505 4.92091 4.97035 5.03505 5.08699 5.10449 5.16499 5.22264 5.25033 5.41292 5.45747 5.47074 5.62775 5.70757 5.82321 6.17633 6.26321 6.29676 6.45854 6.68873 6.87103 7.38412 8.93182 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.004827 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.250385 B = 5799.135336 C = 6200.122872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.086 3.914 11 N -0.674 5.674 12 C 0.089 3.911 13 H 0.038 0.962 14 C -0.108 4.108 15 C -0.107 4.107 16 C 0.064 3.936 17 N -0.534 5.534 18 C 0.054 3.946 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.122 4.122 22 C 0.098 3.902 23 H 0.050 0.950 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.338 0.662 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -20.533 1.745 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.043 4.043 11 N -0.308 5.308 12 C -0.022 4.022 13 H 0.055 0.945 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.064 4.064 17 N -0.260 5.260 18 C -0.073 4.073 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.011 4.011 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.006 0.994 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.480 -20.031 1.066 20.212 hybrid contribution 0.997 0.654 0.844 1.461 sum 3.477 -19.377 1.910 19.779 Atomic orbital electron populations 1.70119 1.07862 1.27760 1.51456 1.25976 0.95744 1.03352 0.94600 0.85420 0.78614 0.78304 0.78522 1.19737 1.20618 1.18734 1.21612 0.93434 0.92325 1.50892 0.92314 1.18864 0.94194 0.92328 0.94715 1.21789 0.95433 0.89021 0.98015 1.60464 1.19309 1.00535 1.50472 1.21659 0.93368 0.90607 0.96523 0.94460 1.21513 0.97728 1.00452 0.94885 1.21350 0.96989 0.98118 0.98037 1.22040 0.99487 0.96065 0.88805 1.62108 1.24521 1.37283 1.02107 1.22158 0.98115 0.90964 0.96100 1.21585 0.97636 1.01855 0.94353 1.21519 0.97201 0.97510 0.98871 1.21741 1.00513 0.99230 0.94558 1.21632 0.91083 0.95542 0.92876 0.93194 0.92761 0.99013 0.99444 0.97070 0.92873 0.84088 0.93269 0.90846 0.90899 0.92566 0.94431 0.90381 0.90287 0.94480 0.92546 0.89646 0.91120 0.91240 0.91459 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.03 5.23 29.85 0.16 2.19 16 10 C 0.09 3.84 5.42 86.30 0.47 4.30 16 11 N -0.67 -25.32 5.50 -491.25 -2.70 -28.02 16 12 C 0.09 2.65 2.27 44.97 0.10 2.75 16 13 H 0.04 1.13 7.78 -2.38 -0.02 1.12 16 14 C -0.11 -2.94 5.61 30.55 0.17 -2.77 16 15 C -0.11 -2.84 5.94 30.52 0.18 -2.66 16 16 C 0.06 1.44 5.33 86.20 0.46 1.90 16 17 N -0.53 -13.27 4.61 -869.87 -4.01 -17.28 16 18 C 0.05 1.06 5.33 86.20 0.46 1.52 16 19 C -0.12 -2.19 6.11 30.61 0.19 -2.00 16 20 C -0.11 -2.15 6.01 30.65 0.18 -1.96 16 21 C -0.12 -2.95 5.06 30.65 0.16 -2.79 16 22 C 0.10 2.43 1.97 45.11 0.09 2.52 16 23 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 25 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 26 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 28 H 0.05 2.36 7.46 -2.39 -0.02 2.35 16 29 H 0.34 12.96 5.90 -89.70 -0.53 12.43 16 30 H 0.05 1.50 7.46 -2.39 -0.02 1.48 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.90 7.65 -2.38 -0.02 1.88 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 1.64 8.03 -2.38 -0.02 1.62 16 36 H 0.08 1.44 8.03 -2.38 -0.02 1.42 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.05 1.59 5.94 -2.38 -0.01 1.58 16 Total: -1.00 -65.31 323.18 -0.67 -65.98 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.42 Total: 18.44 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 3.31 Total: -28.30 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.42 Total: -103.33 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.31 -0.67 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.597 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds