Wall clock time and date at job start Mon Mar 30 2020 04:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48504 * 109.46938 * 269.99753 * 3 2 1 5 5 H 1.48499 * 109.47182 * 29.99371 * 3 2 1 6 6 H 1.48495 * 109.47296 * 149.99837 * 3 2 1 7 7 C 1.37880 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99977 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47265 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47601 * 180.02562 * 10 9 7 12 12 C 1.46893 * 111.00406 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.34520 * 324.81208 * 12 11 10 14 14 C 1.52941 * 109.40894 * 84.61645 * 12 11 10 15 15 C 1.53218 * 108.69352 * 178.19546 * 14 12 11 16 16 C 1.52836 * 108.82530 * 301.27971 * 15 14 12 17 17 N 1.47149 * 110.11564 * 59.82135 * 16 15 14 18 18 C 1.47149 * 109.27787 * 175.64260 * 17 16 15 19 19 C 1.52839 * 110.11754 * 184.34508 * 18 17 16 20 20 C 1.53222 * 108.82388 * 300.17844 * 19 18 17 21 21 C 1.52937 * 108.68781 * 58.72931 * 20 19 18 22 22 C 1.46709 * 111.52327 * 299.40921 * 17 16 15 23 23 H 1.09001 * 109.50356 * 298.69262 * 22 17 16 24 24 H 0.96993 * 120.00128 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46948 * 60.00443 * 9 7 2 26 26 H 1.08996 * 109.47106 * 300.00376 * 9 7 2 27 27 H 1.09003 * 109.47419 * 59.99679 * 10 9 7 28 28 H 1.09002 * 109.47129 * 300.00576 * 10 9 7 29 29 H 1.00897 * 110.99681 * 56.04524 * 11 10 9 30 30 H 1.08994 * 109.60366 * 58.42908 * 14 12 11 31 31 H 1.09000 * 109.73254 * 298.03309 * 14 12 11 32 32 H 1.09004 * 109.57260 * 181.48055 * 15 14 12 33 33 H 1.08998 * 109.68811 * 61.15574 * 15 14 12 34 34 H 1.08996 * 109.36625 * 299.61976 * 16 15 14 35 35 H 1.09003 * 109.25741 * 179.97438 * 16 15 14 36 36 H 1.08993 * 109.36474 * 64.14307 * 18 17 16 37 37 H 1.09007 * 109.25329 * 304.47573 * 18 17 16 38 38 H 1.09000 * 109.57585 * 180.37583 * 19 18 17 39 39 H 1.09007 * 109.57623 * 59.98396 * 19 18 17 40 40 H 1.09001 * 109.60084 * 298.96615 * 20 19 18 41 41 H 1.08996 * 109.59488 * 178.48433 * 20 19 18 42 42 H 1.09005 * 109.40472 * 181.80333 * 21 20 19 43 43 H 1.08992 * 109.41298 * 62.03118 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4906 -2.6366 0.0001 12 6 6.0170 -4.0079 0.0009 13 1 5.3617 -4.6460 0.5938 14 6 6.0729 -4.5317 -1.4350 15 6 6.6658 -5.9444 -1.4197 16 6 8.0603 -5.8872 -0.7969 17 7 7.9795 -5.3704 0.5785 18 6 9.3143 -5.4211 1.1958 19 6 9.2332 -4.9898 2.6598 20 6 8.6906 -3.5583 2.7241 21 6 7.3132 -3.5260 2.0602 22 6 7.4222 -4.0136 0.6117 23 1 8.0690 -3.3407 0.0487 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 3.6579 -3.1506 -0.8896 28 1 3.6585 -3.1502 0.8903 29 1 5.8521 -2.1104 0.7814 30 1 6.7020 -3.8776 -2.0386 31 1 5.0676 -4.5617 -1.8552 32 1 6.7366 -6.3217 -2.4399 33 1 6.0290 -6.6036 -0.8299 34 1 8.6957 -5.2318 -1.3925 35 1 8.4888 -6.8894 -0.7821 36 1 9.9865 -4.7521 0.6586 37 1 9.6977 -6.4400 1.1399 38 1 10.2269 -5.0242 3.1063 39 1 8.5641 -5.6587 3.2011 40 1 9.3672 -2.8867 2.1955 41 1 8.6022 -3.2473 3.7650 42 1 6.9299 -2.5056 2.0710 43 1 6.6308 -4.1739 2.6101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:28 Heat of formation + Delta-G solvation = -17.897467 kcal Electronic energy + Delta-G solvation = -19421.845810 eV Core-core repulsion = 16693.455414 eV Total energy + Delta-G solvation = -2728.390396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.08877 -36.40856 -35.11197 -33.18957 -31.72675 -30.88589 -29.41184 -27.46523 -24.25488 -23.66100 -23.00812 -21.70523 -20.42043 -19.76453 -19.53651 -16.75077 -16.29652 -15.52364 -14.96006 -14.76881 -14.49729 -14.16490 -13.96657 -13.92975 -13.58699 -13.19068 -12.99455 -12.70099 -12.51714 -11.99599 -11.79648 -11.65389 -11.23762 -11.20863 -11.07409 -10.96072 -10.76028 -10.69137 -10.45647 -10.05082 -9.90687 -9.75289 -9.61912 -9.19628 -8.51519 -8.41741 -7.89509 -6.02285 -4.00384 3.34231 3.40895 3.45755 3.68955 4.48092 4.56745 4.61529 4.64082 4.76247 4.96420 5.04126 5.09217 5.15307 5.25842 5.32374 5.36816 5.42069 5.48911 5.58331 5.67445 5.73341 5.80733 5.83915 5.86411 5.94534 5.97582 6.05127 6.07837 6.23605 6.26581 6.31413 6.32355 6.52382 6.82609 6.96087 7.02935 7.20581 7.41636 7.65377 7.79755 7.95114 8.55858 9.02159 9.60273 11.11161 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.004758 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.664733 B = 5884.025038 C = 6483.554141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.076 3.924 11 N -0.692 5.692 12 C 0.095 3.905 13 H 0.048 0.952 14 C -0.110 4.110 15 C -0.118 4.118 16 C 0.055 3.945 17 N -0.528 5.528 18 C 0.054 3.946 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.120 4.120 22 C 0.088 3.912 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.334 0.666 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.261 -11.142 2.178 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.053 4.053 11 N -0.325 5.325 12 C -0.016 4.016 13 H 0.066 0.934 14 C -0.148 4.148 15 C -0.156 4.156 16 C -0.073 4.073 17 N -0.253 5.253 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.020 4.020 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.822 -11.246 1.774 22.859 hybrid contribution 0.644 1.183 0.402 1.406 sum 20.466 -10.062 2.177 22.910 Atomic orbital electron populations 1.69914 1.06319 1.26885 1.51234 1.25004 0.94713 0.99176 0.94509 0.86737 0.80270 0.83463 0.78550 1.20263 1.21519 1.19022 1.21077 0.89402 0.94502 1.50882 0.91118 1.19545 0.96653 0.91935 0.96624 1.21977 0.83947 0.99862 0.99471 1.60699 1.10019 1.12005 1.49823 1.21490 0.93618 0.90702 0.95768 0.93360 1.21587 1.01599 0.94970 0.96671 1.21590 0.95888 0.97917 1.00195 1.22110 0.97460 0.99467 0.88288 1.62222 1.22605 1.22748 1.17746 1.22094 0.89422 1.00689 0.95144 1.21587 1.00998 0.97001 0.95913 1.21566 0.96785 0.96711 1.00735 1.21742 0.97586 1.01412 0.95094 1.21704 0.95832 0.88577 0.95909 0.93507 0.92752 0.96957 0.96159 0.91765 0.95986 0.84576 0.91731 0.91415 0.91438 0.91190 0.95021 0.91026 0.95131 0.90927 0.91684 0.91047 0.92230 0.91669 0.91058 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.08 1.56 5.42 -3.83 -0.02 1.54 16 11 N -0.69 -11.93 6.31 -106.64 -0.67 -12.60 16 12 C 0.09 1.40 2.04 -67.63 -0.14 1.26 16 13 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 14 C -0.11 -1.51 5.50 -26.65 -0.15 -1.66 16 15 C -0.12 -1.31 6.10 -26.70 -0.16 -1.48 16 16 C 0.05 0.57 5.33 -3.77 -0.02 0.55 16 17 N -0.53 -6.09 4.71 -226.30 -1.07 -7.15 16 18 C 0.05 0.52 5.33 -3.77 -0.02 0.50 16 19 C -0.12 -1.05 6.10 -26.70 -0.16 -1.22 16 20 C -0.12 -1.18 6.02 -26.65 -0.16 -1.34 16 21 C -0.12 -1.43 5.02 -26.65 -0.13 -1.57 16 22 C 0.09 1.13 1.90 -67.58 -0.13 1.00 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.06 1.36 7.45 -51.93 -0.39 0.97 16 28 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.33 5.49 6.18 -39.29 -0.24 5.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.01 7.49 -51.93 -0.39 0.62 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.88 6.22 -51.93 -0.32 0.55 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -30.42 321.25 -10.44 -40.85 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.00 Total: 0.36 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -1.64 Total: -16.31 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.97 Total: -47.22 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.42 -10.44 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.956 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds