Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47480 * 2 1 4 4 C 1.35349 * 126.91519 * 270.02378 * 3 2 1 5 5 C 1.50697 * 126.74833 * 0.02562 * 4 3 2 6 6 N 1.46901 * 109.46943 * 269.70742 * 5 4 3 7 7 C 1.46905 * 110.99870 * 180.02562 * 6 5 4 8 8 N 1.33774 * 106.49578 * 179.73867 * 4 3 2 9 9 N 1.28639 * 108.88645 * 0.26405 * 8 4 3 10 10 N 1.28717 * 110.17747 * 0.02562 * 9 8 4 11 11 C 1.46501 * 125.86583 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47120 * 89.97368 * 11 10 9 13 13 C 1.53007 * 109.46589 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46746 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00060 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99977 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99692 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00308 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47046 * 90.00136 * 18 16 14 20 20 H 1.48497 * 109.47514 * 210.00153 * 18 16 14 21 21 H 1.48502 * 109.47249 * 330.00472 * 18 16 14 22 22 H 1.09000 * 109.46813 * 59.99400 * 1 2 3 23 23 H 1.08998 * 109.47737 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46976 * 300.00379 * 1 2 3 25 25 H 1.09004 * 109.46795 * 240.00066 * 2 1 3 26 26 H 1.09000 * 109.46813 * 120.00600 * 2 1 3 27 27 H 1.09004 * 109.46763 * 149.71184 * 5 4 3 28 28 H 1.08995 * 109.47483 * 29.70840 * 5 4 3 29 29 H 1.00901 * 111.00067 * 303.95401 * 6 5 4 30 30 H 1.09001 * 109.46798 * 300.00327 * 7 6 5 31 31 H 1.08998 * 109.46961 * 60.00043 * 7 6 5 32 32 H 1.08996 * 109.46906 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46498 * 209.97243 * 11 10 9 34 34 H 1.09000 * 109.46945 * 329.96479 * 11 10 9 35 35 H 1.08995 * 109.46998 * 299.99502 * 12 11 10 36 36 H 1.09001 * 109.47440 * 59.99879 * 12 11 10 37 37 H 1.08995 * 109.47073 * 299.99492 * 13 12 11 38 38 H 1.09001 * 109.47299 * 59.99829 * 13 12 11 39 39 H 0.97003 * 120.00109 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3030 2.1874 -1.0822 5 6 2.1606 1.7881 -2.5283 6 7 3.4222 1.2026 -3.0011 7 6 3.3207 0.8012 -4.4106 8 7 2.7157 3.3712 -0.6154 9 7 2.7068 3.3379 0.6705 10 7 2.3075 2.1854 1.0820 11 6 2.1673 1.7750 2.4813 12 6 0.7560 2.1056 2.9709 13 6 0.6096 1.6763 4.4322 14 6 -0.7804 2.0026 4.9146 15 1 -1.4885 2.4690 4.2458 16 6 -1.1483 1.7046 6.2095 17 7 -0.2860 1.1361 7.0238 18 14 -2.8709 2.1096 6.8078 19 1 -3.7685 0.9549 6.5507 20 1 -2.8348 2.3936 8.2650 21 1 -3.3789 3.3023 6.0835 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.9217 2.6677 -3.1262 28 1 1.3606 1.0544 -2.6256 29 1 4.1916 1.8404 -2.8616 30 1 2.5285 0.0607 -4.5213 31 1 3.0900 1.6741 -5.0212 32 1 4.2680 0.3705 -4.7348 33 1 2.3384 0.7016 2.5639 34 1 2.8976 2.3072 3.0909 35 1 0.5850 3.1789 2.8883 36 1 0.0259 1.5733 2.3613 37 1 0.7805 0.6030 4.5144 38 1 1.3397 2.2083 5.0421 39 1 -0.5447 0.9268 7.9350 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = 70.453416 kcal Electronic energy + Delta-G solvation = -18497.413245 eV Core-core repulsion = 15669.313687 eV Total energy + Delta-G solvation = -2828.099558 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.06977 -36.56284 -35.71386 -34.12643 -33.23438 -31.35026 -30.02772 -27.48763 -26.91414 -24.14969 -23.95221 -23.44681 -21.08178 -20.75896 -19.96881 -17.02500 -16.37148 -16.19566 -15.81004 -14.86443 -14.79043 -14.58143 -14.47361 -14.01965 -13.80037 -12.86169 -12.61566 -12.55520 -12.43423 -12.22745 -11.96843 -11.89571 -11.74347 -11.25431 -11.13095 -11.01289 -10.89312 -10.70267 -10.49258 -9.97198 -9.93653 -9.48072 -9.20008 -8.86966 -8.60637 -8.46433 -6.11496 -4.14680 1.84994 2.62541 2.68771 3.25962 3.32888 3.36532 4.17173 4.37338 4.49429 4.66989 4.81615 4.94874 5.05517 5.20283 5.24102 5.25385 5.28052 5.40530 5.40904 5.54132 5.63377 5.63776 5.69294 5.87679 5.98486 6.06857 6.16105 6.28387 6.43136 6.47883 6.73082 6.79689 6.93962 7.12231 7.47645 7.57591 7.85640 8.26215 8.78208 8.90860 9.50415 10.99718 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039295 B = 0.004069 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.380826 B = 6880.369487 C = 7125.957140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.050 4.050 3 C 0.009 3.991 4 C -0.036 4.036 5 C 0.151 3.849 6 N -0.691 5.691 7 C 0.028 3.972 8 N -0.277 5.277 9 N -0.087 5.087 10 N -0.275 5.275 11 C 0.107 3.893 12 C -0.124 4.124 13 C 0.027 3.973 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.346 0.654 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -3.956 -17.838 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.175 4.175 5 C 0.020 3.980 6 N -0.322 5.322 7 C -0.122 4.122 8 N -0.143 5.143 9 N -0.065 5.065 10 N -0.068 5.068 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.426 -3.213 -16.958 18.092 hybrid contribution -1.246 0.057 -0.053 1.249 sum 4.179 -3.155 -17.010 17.798 Atomic orbital electron populations 1.21853 0.93874 1.02467 1.02860 1.20095 0.96503 0.88283 1.04095 1.21920 1.06410 0.97500 0.86636 1.21391 1.08296 0.91726 0.96123 1.20018 0.92537 0.97777 0.87627 1.60436 1.05727 1.46983 1.19087 1.22197 1.02539 0.99676 0.87776 1.74962 1.17700 1.20344 1.01322 1.78276 1.18389 1.03665 1.06220 1.47615 1.40824 1.09171 1.09183 1.22582 1.02578 1.01793 0.74340 1.22139 0.91138 1.01875 1.01096 1.19046 0.97700 0.96888 0.87471 1.21134 0.97688 1.40377 0.96944 0.92608 1.25000 0.97431 0.95029 0.96803 1.69949 1.34677 1.42147 1.06483 0.86565 0.84488 0.78818 0.78002 1.20569 1.21112 1.19822 0.92540 0.91580 0.91613 0.88807 0.90405 0.93555 0.89483 0.83654 0.91577 0.95946 0.91359 0.88206 0.87820 0.92010 0.92113 0.96109 0.96028 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 37.16 0.37 -1.36 16 2 C -0.05 -0.58 5.90 -27.88 -0.16 -0.74 16 3 C 0.01 0.14 6.25 -82.09 -0.51 -0.38 16 4 C -0.04 -0.53 6.76 -82.78 -0.56 -1.09 16 5 C 0.15 1.69 5.95 -4.98 -0.03 1.66 16 6 N -0.69 -7.03 6.85 -122.42 -0.84 -7.87 16 7 C 0.03 0.21 10.70 60.07 0.64 0.85 16 8 N -0.28 -4.89 12.41 33.29 0.41 -4.48 16 9 N -0.09 -1.62 13.17 60.35 0.79 -0.82 16 10 N -0.28 -4.56 3.34 -57.05 -0.19 -4.75 16 11 C 0.11 1.71 6.18 -4.04 -0.02 1.69 16 12 C -0.12 -2.39 5.48 -26.73 -0.15 -2.54 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.89 6.08 -51.93 -0.32 0.57 16 25 H 0.09 0.94 7.99 -51.93 -0.41 0.52 16 26 H 0.08 0.86 7.16 -51.93 -0.37 0.49 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.85 7.98 -51.93 -0.41 0.44 16 29 H 0.35 3.63 8.81 -39.29 -0.35 3.29 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.10 1.40 7.13 -51.93 -0.37 1.03 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.14 6.09 -51.93 -0.32 0.83 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -30.70 325.26 -6.50 -37.19 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.32 Total: -0.78 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.98 Total: -14.39 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.92 Total: -43.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.70 -6.50 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.648 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds