Wall clock time and date at job start Mon Mar 30 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47296 * 2 1 4 4 C 1.35350 * 126.91473 * 270.02280 * 3 2 1 5 5 C 1.50696 * 126.74937 * 359.96406 * 4 3 2 6 6 C 1.52993 * 109.47429 * 89.99868 * 5 4 3 7 7 N 1.46906 * 109.47378 * 179.97438 * 6 5 4 8 8 N 1.33773 * 106.49783 * 180.22662 * 4 3 2 9 9 N 1.28628 * 108.88457 * 359.56160 * 8 4 3 10 10 N 1.28714 * 110.18267 * 0.44854 * 9 8 4 11 11 C 1.46499 * 125.87008 * 179.69988 * 10 9 8 12 12 C 1.53003 * 109.47125 * 270.02636 * 11 10 9 13 13 C 1.52998 * 109.47391 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47362 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00386 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99862 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99815 * 18 16 14 21 21 H 1.48504 * 109.47081 * 239.99774 * 18 16 14 22 22 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47559 * 300.00581 * 1 2 3 24 24 H 1.09010 * 109.46838 * 60.00371 * 1 2 3 25 25 H 1.08996 * 109.47126 * 239.99582 * 2 1 3 26 26 H 1.09005 * 109.46401 * 119.99460 * 2 1 3 27 27 H 1.09004 * 109.47043 * 330.00046 * 5 4 3 28 28 H 1.09004 * 109.47476 * 210.00120 * 5 4 3 29 29 H 1.09004 * 109.46862 * 60.00067 * 6 5 4 30 30 H 1.09000 * 109.47250 * 300.00090 * 6 5 4 31 31 H 1.00904 * 110.99860 * 56.05050 * 7 6 5 32 32 H 1.00902 * 110.99567 * 179.97438 * 7 6 5 33 33 H 1.08991 * 109.47667 * 30.02667 * 11 10 9 34 34 H 1.09002 * 109.46765 * 150.03604 * 11 10 9 35 35 H 1.09001 * 109.47315 * 300.00190 * 12 11 10 36 36 H 1.08996 * 109.47080 * 60.00136 * 12 11 10 37 37 H 1.09001 * 109.46707 * 300.00147 * 13 12 11 38 38 H 1.08996 * 109.47237 * 59.99817 * 13 12 11 39 39 H 0.96996 * 120.00519 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3029 2.1873 -1.0822 5 6 2.1618 1.7877 -2.5283 6 6 0.7539 2.1325 -3.0177 7 7 0.6165 1.7435 -4.4276 8 7 2.7258 3.3676 -0.6155 9 7 2.7088 3.3371 0.6703 10 7 2.3028 2.1872 1.0820 11 6 2.1588 1.7781 2.4813 12 6 3.4691 1.1559 2.9681 13 6 3.3186 0.7281 4.4294 14 6 4.6093 0.1158 4.9090 15 1 5.4525 0.0390 4.2386 16 6 4.7137 -0.3464 6.2038 17 7 3.6871 -0.2525 7.0204 18 14 6.3135 -1.1061 6.7983 19 1 7.3070 -1.0948 5.6946 20 1 6.8379 -0.3218 7.9450 21 1 6.0671 -2.5062 7.2275 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.3280 0.7149 -2.6266 28 1 2.8966 2.3256 -3.1274 29 1 0.5877 3.2053 -2.9194 30 1 0.0191 1.5946 -2.4187 31 1 0.8293 0.7654 -4.5552 32 1 -0.3058 1.9608 -4.7744 33 1 1.9214 2.6491 3.0919 34 1 1.3558 1.0458 2.5649 35 1 3.7066 0.2847 2.3575 36 1 4.2722 1.8880 2.8844 37 1 3.0809 1.5990 5.0402 38 1 2.5156 -0.0042 4.5127 39 1 3.7607 -0.5773 7.9314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:11 Heat of formation + Delta-G solvation = 60.696081 kcal Electronic energy + Delta-G solvation = -18436.479516 eV Core-core repulsion = 15607.956848 eV Total energy + Delta-G solvation = -2828.522668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.11005 -36.30143 -35.69858 -34.18818 -33.28484 -31.52608 -30.43941 -27.99773 -27.21362 -24.31665 -23.60357 -22.95104 -21.02134 -20.50377 -20.20145 -17.01031 -16.30629 -16.14154 -15.99925 -15.20018 -14.92246 -14.58415 -14.46188 -14.16227 -13.85426 -12.96622 -12.81626 -12.67486 -12.27070 -12.14155 -12.04938 -11.83840 -11.64228 -11.17621 -11.16777 -11.07307 -10.97951 -10.69114 -10.48421 -10.00936 -9.95457 -9.49533 -9.20576 -8.96715 -8.78515 -8.48742 -6.13433 -4.16606 1.80265 2.63530 2.68393 3.24054 3.32183 3.36494 4.19530 4.36028 4.45749 4.69251 4.77085 4.83757 4.99232 5.05829 5.13442 5.23387 5.28813 5.35677 5.39189 5.43642 5.59790 5.66651 5.70926 5.86893 5.99510 6.06095 6.09270 6.26518 6.38296 6.42675 6.73669 6.82549 6.90549 7.13960 7.45194 7.54816 7.83815 8.24326 8.77204 8.89237 9.48715 10.97814 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.003948 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.759053 B = 7091.044324 C = 7242.265598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.012 4.012 4 C -0.029 4.029 5 C -0.026 4.026 6 C 0.066 3.934 7 N -0.851 5.851 8 N -0.275 5.275 9 N -0.086 5.086 10 N -0.274 5.274 11 C 0.107 3.893 12 C -0.122 4.122 13 C 0.026 3.974 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.339 0.661 32 H 0.342 0.658 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -0.784 -16.822 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.169 4.169 5 C -0.065 4.065 6 C -0.065 4.065 7 N -0.381 5.381 8 N -0.140 5.140 9 N -0.064 5.064 10 N -0.067 5.067 11 C -0.013 4.013 12 C -0.161 4.161 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.812 1.157 -16.300 18.112 hybrid contribution -0.239 -2.088 0.804 2.250 sum -8.051 -0.931 -15.496 17.488 Atomic orbital electron populations 1.21804 0.94226 1.02271 1.02257 1.20095 0.96220 0.88591 1.04409 1.21902 1.08060 0.97616 0.86927 1.21503 1.07140 0.91995 0.96251 1.19717 0.97684 1.01122 0.88020 1.21796 0.95747 1.01262 0.87670 1.58693 1.34965 1.25379 1.19024 1.75005 1.17464 1.20482 1.01052 1.78291 1.17735 1.03997 1.06423 1.47608 1.40758 1.09177 1.09115 1.22583 1.02334 1.02006 0.74385 1.22079 0.93285 0.99666 1.01063 1.19050 0.97850 0.96772 0.87466 1.21176 0.98277 1.39750 0.96947 0.92525 1.25005 0.96615 0.95874 0.96791 1.69951 1.30075 1.46880 1.06363 0.86505 0.83585 0.78928 0.78843 1.19681 1.20865 1.20903 0.91548 0.92580 0.92407 0.89290 0.89716 0.90675 0.89458 0.90724 0.95239 0.84854 0.84581 0.87787 0.88280 0.92427 0.91905 0.95994 0.96144 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.96 16 2 C -0.05 -0.57 5.82 -27.89 -0.16 -0.73 16 3 C -0.01 -0.17 6.25 -82.09 -0.51 -0.68 16 4 C -0.03 -0.42 6.50 -82.78 -0.54 -0.96 16 5 C -0.03 -0.28 5.86 -27.89 -0.16 -0.44 16 6 C 0.07 0.63 6.77 -3.82 -0.03 0.60 16 7 N -0.85 -6.55 9.62 -10.37 -0.10 -6.65 16 8 N -0.27 -4.89 12.41 33.29 0.41 -4.48 16 9 N -0.09 -1.60 13.16 60.35 0.79 -0.81 16 10 N -0.27 -4.47 3.34 -57.05 -0.19 -4.66 16 11 C 0.11 1.69 6.03 -4.04 -0.02 1.67 16 12 C -0.12 -2.36 5.48 -26.73 -0.15 -2.50 16 13 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 14 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.49 6.30 -51.92 -0.33 0.16 16 25 H 0.09 0.78 7.31 -51.93 -0.38 0.40 16 26 H 0.08 0.96 7.81 -51.93 -0.41 0.55 16 27 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.26 6.30 -51.93 -0.33 -0.07 16 31 H 0.34 2.07 8.99 -39.29 -0.35 1.71 16 32 H 0.34 2.08 9.08 -39.29 -0.36 1.72 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.10 1.36 7.72 -51.93 -0.40 0.96 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -31.32 324.97 -6.50 -37.82 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.28 Total: -0.62 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.76 Total: -16.54 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 1.65 Total: -41.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.32 -6.50 -37.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.519 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds