Wall clock time and date at job start Mon Mar 30 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47296 * 2 1 4 4 C 1.35350 * 126.91473 * 270.02280 * 3 2 1 5 5 C 1.50696 * 126.74937 * 359.96406 * 4 3 2 6 6 C 1.52993 * 109.47429 * 89.99868 * 5 4 3 7 7 N 1.46906 * 109.47378 * 179.97438 * 6 5 4 8 8 N 1.33773 * 106.49783 * 180.22662 * 4 3 2 9 9 N 1.28628 * 108.88457 * 359.56160 * 8 4 3 10 10 N 1.28714 * 110.18267 * 0.44854 * 9 8 4 11 11 C 1.46499 * 125.87008 * 179.69988 * 10 9 8 12 12 C 1.53003 * 109.47125 * 270.02636 * 11 10 9 13 13 C 1.52998 * 109.47391 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47362 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00001 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99824 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00386 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99862 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99815 * 18 16 14 21 21 H 1.48504 * 109.47081 * 239.99774 * 18 16 14 22 22 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47559 * 300.00581 * 1 2 3 24 24 H 1.09010 * 109.46838 * 60.00371 * 1 2 3 25 25 H 1.08996 * 109.47126 * 239.99582 * 2 1 3 26 26 H 1.09005 * 109.46401 * 119.99460 * 2 1 3 27 27 H 1.09004 * 109.47043 * 330.00046 * 5 4 3 28 28 H 1.09004 * 109.47476 * 210.00120 * 5 4 3 29 29 H 1.09004 * 109.46862 * 60.00067 * 6 5 4 30 30 H 1.09000 * 109.47250 * 300.00090 * 6 5 4 31 31 H 1.00904 * 110.99860 * 56.05050 * 7 6 5 32 32 H 1.00902 * 110.99567 * 179.97438 * 7 6 5 33 33 H 1.08991 * 109.47667 * 30.02667 * 11 10 9 34 34 H 1.09002 * 109.46765 * 150.03604 * 11 10 9 35 35 H 1.09001 * 109.47315 * 300.00190 * 12 11 10 36 36 H 1.08996 * 109.47080 * 60.00136 * 12 11 10 37 37 H 1.09001 * 109.46707 * 300.00147 * 13 12 11 38 38 H 1.08996 * 109.47237 * 59.99817 * 13 12 11 39 39 H 0.96996 * 120.00519 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3029 2.1873 -1.0822 5 6 2.1618 1.7877 -2.5283 6 6 0.7539 2.1325 -3.0177 7 7 0.6165 1.7435 -4.4276 8 7 2.7258 3.3676 -0.6155 9 7 2.7088 3.3371 0.6703 10 7 2.3028 2.1872 1.0820 11 6 2.1588 1.7781 2.4813 12 6 3.4691 1.1559 2.9681 13 6 3.3186 0.7281 4.4294 14 6 4.6093 0.1158 4.9090 15 1 5.4525 0.0390 4.2386 16 6 4.7137 -0.3464 6.2038 17 7 3.6871 -0.2525 7.0204 18 14 6.3135 -1.1061 6.7983 19 1 7.3070 -1.0948 5.6946 20 1 6.8379 -0.3218 7.9450 21 1 6.0671 -2.5062 7.2275 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.3280 0.7149 -2.6266 28 1 2.8966 2.3256 -3.1274 29 1 0.5877 3.2053 -2.9194 30 1 0.0191 1.5946 -2.4187 31 1 0.8293 0.7654 -4.5552 32 1 -0.3058 1.9608 -4.7744 33 1 1.9214 2.6491 3.0919 34 1 1.3558 1.0458 2.5649 35 1 3.7066 0.2847 2.3575 36 1 4.2722 1.8880 2.8844 37 1 3.0809 1.5990 5.0402 38 1 2.5156 -0.0042 4.5127 39 1 3.7607 -0.5773 7.9314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:11 Heat of formation + Delta-G solvation = 39.160537 kcal Electronic energy + Delta-G solvation = -18437.413367 eV Core-core repulsion = 15607.956848 eV Total energy + Delta-G solvation = -2829.456519 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.32644 -37.44893 -36.82177 -35.45160 -34.72415 -33.12915 -31.46674 -29.18636 -28.65895 -25.90254 -24.69800 -23.86580 -22.61172 -21.74965 -21.34871 -18.69013 -17.75058 -17.33025 -16.94380 -16.50227 -16.20932 -15.92544 -15.54169 -15.18558 -14.71591 -14.42234 -14.15843 -13.80911 -13.62224 -13.42074 -13.16891 -12.87518 -12.82551 -12.78322 -12.63833 -12.45603 -12.20146 -11.91409 -11.81827 -11.67261 -11.53925 -11.38151 -10.82910 -10.59397 -9.93697 -9.55856 -8.24642 -6.34792 0.60964 1.37943 1.39327 1.42798 1.48754 1.51988 2.38496 3.09825 3.26987 3.54067 3.63916 3.80585 3.92352 4.03182 4.09197 4.23681 4.24474 4.35686 4.43354 4.51738 4.54038 4.62653 4.77257 4.84799 4.97232 5.02546 5.07126 5.17207 5.19970 5.27021 5.40091 5.44036 5.61023 5.66289 5.77496 6.18225 6.24859 6.67110 6.79936 7.34633 7.52826 8.86876 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.037587 B = 0.003948 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.759053 B = 7091.044324 C = 7242.265598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.005 4.005 4 C -0.032 4.032 5 C -0.022 4.022 6 C 0.075 3.925 7 N -0.855 5.855 8 N -0.302 5.302 9 N -0.128 5.128 10 N -0.280 5.280 11 C 0.116 3.884 12 C -0.104 4.104 13 C 0.032 3.968 14 C -0.545 4.545 15 H 0.054 0.946 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.275 1.275 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.351 0.649 32 H 0.352 0.648 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.001 0.999 38 H 0.013 0.987 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 -2.525 -18.150 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.173 4.173 5 C -0.062 4.062 6 C -0.056 4.056 7 N -0.387 5.387 8 N -0.166 5.166 9 N -0.106 5.106 10 N -0.073 5.073 11 C -0.004 4.004 12 C -0.143 4.143 13 C -0.006 4.006 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.784 3.216 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.200 1.200 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.133 0.867 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.163 -0.572 -17.645 19.450 hybrid contribution -0.153 -1.560 1.150 1.945 sum -8.316 -2.133 -16.495 18.595 Atomic orbital electron populations 1.21795 0.92700 1.03612 1.02076 1.20315 0.97416 0.86168 1.05438 1.22574 1.06521 0.98766 0.85964 1.22104 1.06158 0.90963 0.98034 1.19831 0.98317 1.02493 0.85549 1.21601 0.94996 1.00131 0.88888 1.58618 1.35919 1.26410 1.17754 1.74954 1.18265 1.22354 1.01069 1.78264 1.19946 1.05393 1.06969 1.47591 1.40983 1.09217 1.09467 1.22394 1.00941 1.02447 0.74586 1.21738 0.94697 0.99448 0.98392 1.18894 0.96335 0.95451 0.89925 1.21602 0.99430 1.39923 0.97357 0.92790 1.25846 0.99952 0.96364 0.97030 1.70051 1.32029 1.47814 1.06783 0.85481 0.79534 0.78265 0.78281 1.19109 1.20540 1.19994 0.89437 0.93711 0.91702 0.86725 0.90200 0.88033 0.90502 0.92867 0.94190 0.83518 0.83412 0.87792 0.85711 0.91905 0.93741 0.98094 0.96859 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.05 -0.99 5.82 29.85 0.17 -0.82 16 3 C 0.00 -0.12 6.25 41.35 0.26 0.13 16 4 C -0.03 -0.90 6.50 41.59 0.27 -0.63 16 5 C -0.02 -0.44 5.86 29.84 0.17 -0.27 16 6 C 0.08 1.28 6.77 86.30 0.58 1.86 16 7 N -0.86 -11.09 9.62 -186.71 -1.80 -12.89 16 8 N -0.30 -10.81 12.41 -48.60 -0.60 -11.41 16 9 N -0.13 -4.83 13.16 37.02 0.49 -4.34 16 10 N -0.28 -9.02 3.34 -334.40 -1.12 -10.13 16 11 C 0.12 3.63 6.03 86.38 0.52 4.15 16 12 C -0.10 -4.02 5.48 30.59 0.17 -3.85 16 13 C 0.03 1.53 4.97 29.85 0.15 1.68 16 14 C -0.55 -29.84 9.11 25.60 0.23 -29.60 16 15 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -53.84 13.29 21.45 0.28 -53.55 16 18 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.87 6.30 -2.38 -0.02 0.86 16 25 H 0.11 1.53 7.31 -2.39 -0.02 1.51 16 26 H 0.08 1.59 7.81 -2.38 -0.02 1.57 16 27 H 0.10 1.46 7.31 -2.38 -0.02 1.44 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.04 0.60 6.30 -2.39 -0.02 0.58 16 31 H 0.35 3.19 8.99 -89.69 -0.81 2.39 16 32 H 0.35 3.46 9.08 -89.69 -0.81 2.65 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.12 3.24 7.72 -2.39 -0.02 3.23 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -67.97 324.97 2.42 -65.56 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.57 Total: 9.51 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 3.71 Total: -27.92 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.74 Total: -92.33 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.97 2.42 -65.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.717 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds